Wall clock time and date at job start Mon Mar 30 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.09005 * 109.47347 * 300.00098 * 15 13 12 17 17 C 1.53000 * 109.47232 * 60.00070 * 15 13 12 18 18 C 1.52998 * 109.47432 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.46844 * 299.99921 * 18 17 15 20 20 C 1.52998 * 109.47377 * 59.99977 * 19 18 17 21 21 C 1.53003 * 109.47087 * 60.00006 * 20 19 18 22 22 C 1.53001 * 109.47377 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.47295 * 180.02562 * 15 13 12 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47106 * 299.99986 * 17 15 13 29 29 H 1.08997 * 109.47207 * 59.99824 * 17 15 13 30 30 H 1.08997 * 109.47418 * 59.99524 * 18 17 15 31 31 H 1.08995 * 109.47700 * 180.02562 * 18 17 15 32 32 H 1.08996 * 109.47431 * 180.02562 * 19 18 17 33 33 H 1.09007 * 109.47262 * 299.99901 * 19 18 17 34 34 H 1.08996 * 109.46836 * 60.00353 * 21 20 19 35 35 H 1.09002 * 109.47183 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46786 * 300.00124 * 21 20 19 37 37 H 1.09005 * 109.46885 * 60.00290 * 22 20 19 38 38 H 1.09002 * 109.47308 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.47065 * 299.99972 * 22 20 19 40 40 H 1.08999 * 109.47166 * 299.99592 * 23 15 13 41 41 H 1.09002 * 109.47308 * 60.00023 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 3.6871 -1.0407 -3.3641 17 6 1.7222 -1.6433 -4.0100 18 6 2.2312 -2.2946 -5.2974 19 6 2.3764 -1.2286 -6.3853 20 6 3.3723 -0.1623 -5.9250 21 6 4.7322 -0.8133 -5.6642 22 6 3.5179 0.9033 -7.0132 23 6 2.8635 0.4894 -4.6371 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7006 1.1552 3.4844 28 1 1.6191 -2.4029 -3.2351 29 1 0.7534 -1.1796 -4.1954 30 1 3.2000 -2.7583 -5.1116 31 1 1.5215 -3.0539 -5.6257 32 1 2.7385 -1.6927 -7.3027 33 1 1.4075 -0.7649 -6.5712 34 1 5.0947 -1.2772 -6.5814 35 1 5.4416 -0.0537 -5.3358 36 1 4.6287 -1.5727 -4.8891 37 1 2.5492 1.3672 -7.1994 38 1 4.2278 1.6627 -6.6854 39 1 3.8808 0.4390 -7.9302 40 1 1.8948 0.9534 -4.8227 41 1 3.5733 1.2488 -4.3088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756564658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:58 Heat of formation + Delta-G solvation = -128.093873 kcal Electronic energy + Delta-G solvation = -19764.969949 eV Core-core repulsion = 16836.363754 eV Total energy + Delta-G solvation = -2928.606195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.21954 -38.63551 -35.63040 -33.48778 -33.07002 -31.04305 -29.45307 -27.40599 -26.37038 -25.30200 -24.10314 -21.67187 -21.11691 -19.29570 -18.42625 -16.87076 -16.51008 -15.59043 -15.26571 -14.71027 -14.65092 -14.32225 -14.27854 -13.59624 -13.19009 -12.91715 -12.60379 -12.27149 -12.05064 -11.92281 -11.77451 -11.47682 -11.41314 -11.22104 -11.04532 -10.97501 -10.96387 -10.81799 -10.44882 -10.34398 -10.26263 -10.12123 -10.00952 -9.49579 -9.36653 -8.87889 -8.46618 -6.16133 -4.23094 3.07874 3.27388 3.30699 3.33192 3.72193 4.34670 4.61337 4.65509 4.77287 5.03846 5.12240 5.16720 5.31667 5.33069 5.44175 5.48533 5.58501 5.61030 5.66471 5.77581 5.89314 5.91391 5.98219 6.01070 6.02803 6.19043 6.22127 6.26501 6.36262 6.43228 6.52634 6.67888 6.91506 6.95273 7.22804 7.62651 7.76190 7.98179 8.17823 8.69239 8.93491 9.42385 10.91250 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.004657 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.573434 B = 6011.128922 C = 6109.324075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.045 0.955 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.356 6.356 13 C 0.454 3.546 14 O -0.524 6.524 15 C -0.082 4.082 16 H 0.103 0.897 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.065 4.065 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.091 4.091 24 H 0.099 0.901 25 H 0.015 0.985 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 -4.422 -16.884 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.272 6.272 13 C 0.297 3.703 14 O -0.414 6.414 15 C -0.101 4.101 16 H 0.121 0.879 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.065 4.065 21 C -0.205 4.205 22 C -0.197 4.197 23 C -0.128 4.128 24 H 0.117 0.883 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.696 -3.951 -16.666 17.522 hybrid contribution 0.180 -0.208 0.967 1.005 sum 3.876 -4.159 -15.700 16.697 Atomic orbital electron populations 1.22148 0.97658 1.00011 1.01323 1.20596 0.91336 0.93884 0.77991 0.93722 1.20997 1.32394 1.13504 0.88972 0.91414 1.24885 0.94933 0.95108 0.99046 1.69891 1.36029 1.22623 1.24219 0.86339 0.79192 0.79558 0.81059 1.20003 1.21038 1.19945 1.86475 1.75698 1.43680 1.21352 1.23417 0.74808 0.85935 0.86162 1.90581 1.48824 1.17104 1.84871 1.21059 1.01104 0.97403 0.90577 0.87937 1.21488 0.97950 0.97531 0.97775 1.21581 1.01556 0.97674 0.94797 1.21628 0.99072 0.96096 0.97904 1.20558 0.95532 0.95365 0.95048 1.22007 0.96008 1.00853 1.01586 1.21842 1.01776 0.98299 0.97789 1.21468 1.02440 0.96514 0.92404 0.88303 0.96620 0.94499 0.92380 0.90324 0.91636 0.91416 0.91747 0.92092 0.91920 0.92853 0.92642 0.91860 0.92652 0.92589 0.92807 0.91153 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.32 37.16 0.35 -3.64 16 2 C 0.21 5.89 2.56 -27.88 -0.07 5.82 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.85 8.90 -34.44 -0.31 -15.15 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.61 11.31 55.43 0.63 -24.99 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 O -0.36 -8.64 9.77 -39.24 -0.38 -9.02 16 13 C 0.45 9.69 7.23 36.00 0.26 9.95 16 14 O -0.52 -12.66 15.20 -18.75 -0.29 -12.95 16 15 C -0.08 -1.27 2.35 -91.77 -0.22 -1.48 16 16 H 0.10 1.46 6.43 -51.93 -0.33 1.13 16 17 C -0.11 -1.47 5.14 -26.73 -0.14 -1.61 16 18 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 19 C -0.11 -1.06 4.73 -26.73 -0.13 -1.19 16 20 C -0.07 -0.68 0.77 -154.48 -0.12 -0.80 16 21 C -0.15 -1.44 7.78 37.16 0.29 -1.15 16 22 C -0.14 -1.30 8.47 37.16 0.31 -0.99 16 23 C -0.09 -1.24 3.31 -26.71 -0.09 -1.33 16 24 H 0.10 2.73 6.06 -51.93 -0.31 2.41 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 28 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 41 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -30.47 319.52 -7.41 -37.88 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.06 Total: -0.70 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -0.10 Total: -11.29 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.63 Total: -24.99 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.67 Total: -21.97 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.47 -7.41 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756564658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.218 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds