Wall clock time and date at job start Mon Mar 30 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.09005 * 109.47347 * 300.00098 * 15 13 12 17 17 C 1.53000 * 109.47232 * 60.00070 * 15 13 12 18 18 C 1.52998 * 109.47432 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.46844 * 299.99921 * 18 17 15 20 20 C 1.52998 * 109.47377 * 59.99977 * 19 18 17 21 21 C 1.53003 * 109.47087 * 60.00006 * 20 19 18 22 22 C 1.53001 * 109.47377 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.47295 * 180.02562 * 15 13 12 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47106 * 299.99986 * 17 15 13 29 29 H 1.08997 * 109.47207 * 59.99824 * 17 15 13 30 30 H 1.08997 * 109.47418 * 59.99524 * 18 17 15 31 31 H 1.08995 * 109.47700 * 180.02562 * 18 17 15 32 32 H 1.08996 * 109.47431 * 180.02562 * 19 18 17 33 33 H 1.09007 * 109.47262 * 299.99901 * 19 18 17 34 34 H 1.08996 * 109.46836 * 60.00353 * 21 20 19 35 35 H 1.09002 * 109.47183 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46786 * 300.00124 * 21 20 19 37 37 H 1.09005 * 109.46885 * 60.00290 * 22 20 19 38 38 H 1.09002 * 109.47308 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.47065 * 299.99972 * 22 20 19 40 40 H 1.08999 * 109.47166 * 299.99592 * 23 15 13 41 41 H 1.09002 * 109.47308 * 60.00023 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 3.6871 -1.0407 -3.3641 17 6 1.7222 -1.6433 -4.0100 18 6 2.2312 -2.2946 -5.2974 19 6 2.3764 -1.2286 -6.3853 20 6 3.3723 -0.1623 -5.9250 21 6 4.7322 -0.8133 -5.6642 22 6 3.5179 0.9033 -7.0132 23 6 2.8635 0.4894 -4.6371 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7006 1.1552 3.4844 28 1 1.6191 -2.4029 -3.2351 29 1 0.7534 -1.1796 -4.1954 30 1 3.2000 -2.7583 -5.1116 31 1 1.5215 -3.0539 -5.6257 32 1 2.7385 -1.6927 -7.3027 33 1 1.4075 -0.7649 -6.5712 34 1 5.0947 -1.2772 -6.5814 35 1 5.4416 -0.0537 -5.3358 36 1 4.6287 -1.5727 -4.8891 37 1 2.5492 1.3672 -7.1994 38 1 4.2278 1.6627 -6.6854 39 1 3.8808 0.4390 -7.9302 40 1 1.8948 0.9534 -4.8227 41 1 3.5733 1.2488 -4.3088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756564658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:58 Heat of formation + Delta-G solvation = -143.844838 kcal Electronic energy + Delta-G solvation = -19765.652962 eV Core-core repulsion = 16836.363754 eV Total energy + Delta-G solvation = -2929.289208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71193 -39.98212 -37.55855 -35.37443 -34.32518 -32.21298 -31.46779 -28.15802 -27.50663 -27.27493 -25.52937 -23.11370 -22.49355 -21.03099 -19.42722 -18.79992 -18.32051 -17.32248 -16.87581 -16.46520 -15.76950 -15.55077 -15.31519 -14.89687 -14.36959 -14.34258 -14.17459 -13.82168 -13.47731 -13.21451 -12.99505 -12.89487 -12.83533 -12.77547 -12.46821 -12.40153 -12.32258 -12.17377 -11.98538 -11.90235 -11.61340 -11.49994 -11.09929 -11.02930 -10.95888 -10.87500 -10.60779 -8.29928 -6.47555 1.32880 1.40913 1.45102 1.53226 2.02353 2.41397 3.00436 3.59761 3.69604 3.71617 4.05197 4.09611 4.25761 4.31832 4.42578 4.43487 4.50829 4.59684 4.71393 4.74592 4.80319 4.82783 4.90133 5.00044 5.08122 5.09987 5.13695 5.15862 5.18841 5.23726 5.28082 5.39825 5.44363 5.47105 5.51246 5.60634 5.66909 5.90407 6.08413 6.57841 6.96711 7.24858 8.77727 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.038581 B = 0.004657 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.573434 B = 6011.128922 C = 6109.324075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.262 1.262 12 O -0.361 6.361 13 C 0.445 3.555 14 O -0.557 6.557 15 C -0.073 4.073 16 H 0.119 0.881 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.060 4.060 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.087 4.087 24 H 0.081 0.919 25 H 0.020 0.980 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 -6.379 -18.068 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.187 1.187 12 O -0.277 6.277 13 C 0.291 3.709 14 O -0.449 6.449 15 C -0.091 4.091 16 H 0.137 0.863 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.060 4.060 21 C -0.205 4.205 22 C -0.196 4.196 23 C -0.125 4.125 24 H 0.099 0.901 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.568 -5.912 -17.879 19.378 hybrid contribution -0.098 0.481 1.295 1.385 sum 4.469 -5.431 -16.585 18.014 Atomic orbital electron populations 1.21966 0.96812 1.00359 1.00659 1.20324 0.92019 0.91947 0.79471 0.97916 1.21270 1.33477 1.14026 0.89943 0.91386 1.25863 0.94626 0.95669 1.02218 1.70016 1.36507 1.23750 1.25307 0.85211 0.78792 0.78652 0.76618 1.19288 1.20165 1.18697 1.86476 1.76039 1.43757 1.21469 1.24750 0.73634 0.85745 0.86816 1.90558 1.50290 1.18763 1.85319 1.21252 1.02038 0.98245 0.87606 0.86295 1.21519 0.97060 0.96536 0.99458 1.21571 1.02479 0.97951 0.92871 1.21643 0.98718 0.95551 0.98594 1.20550 0.96249 0.95904 0.93293 1.22018 0.95242 1.00653 1.02579 1.21835 1.01669 0.97964 0.98120 1.21480 1.01431 0.95884 0.93693 0.90060 0.96089 0.93468 0.91963 0.91221 0.92514 0.90240 0.89963 0.89570 0.92244 0.90711 0.93159 0.92110 0.92948 0.93046 0.90736 0.92679 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.49 9.32 71.98 0.67 -6.82 16 2 C 0.22 12.30 2.56 29.85 0.08 12.38 16 3 H 0.00 0.19 7.16 -2.38 -0.02 0.18 16 4 C -0.55 -31.93 8.90 25.60 0.23 -31.70 16 5 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -53.70 11.31 21.45 0.24 -53.46 16 8 Si 0.98 43.29 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 O -0.36 -18.07 9.77 -51.37 -0.50 -18.57 16 13 C 0.45 19.67 7.23 71.23 0.51 20.19 16 14 O -0.56 -28.33 15.20 21.95 0.33 -28.00 16 15 C -0.07 -2.22 2.35 -11.54 -0.03 -2.25 16 16 H 0.12 3.28 6.43 -2.38 -0.02 3.27 16 17 C -0.11 -2.79 5.14 30.59 0.16 -2.63 16 18 C -0.11 -1.96 5.65 30.59 0.17 -1.78 16 19 C -0.11 -1.75 4.73 30.59 0.14 -1.60 16 20 C -0.06 -1.13 0.77 -52.16 -0.04 -1.17 16 21 C -0.15 -2.48 7.78 71.98 0.56 -1.92 16 22 C -0.14 -2.29 8.47 71.98 0.61 -1.68 16 23 C -0.09 -2.38 3.31 30.61 0.10 -2.28 16 24 H 0.08 4.63 6.06 -2.38 -0.01 4.61 16 25 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.25 6.43 -2.39 -0.02 1.24 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.04 4.81 -2.39 -0.01 1.03 16 37 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 41 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -67.46 319.52 6.70 -60.76 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.98 Total: 13.87 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 3.62 Total: -19.92 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.24 Total: -53.46 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.17 Total: -46.56 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -67.46 6.70 -60.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756564658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.082 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds