Wall clock time and date at job start Mon Mar 30 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.02025 * 2 1 4 4 C 1.54267 * 110.02970 * 121.44028 * 2 1 3 5 5 C 1.54893 * 104.19306 * 142.89118 * 4 2 1 6 6 C 1.54887 * 102.75285 * 322.06125 * 5 4 2 7 7 H 1.09006 * 110.59444 * 279.20991 * 6 5 4 8 8 C 1.50698 * 110.48986 * 156.61992 * 6 5 4 9 9 O 1.20822 * 119.99804 * 245.22505 * 8 6 5 10 10 O 1.34231 * 120.00053 * 65.22490 * 8 6 5 11 11 C 1.45198 * 116.99983 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47233 * 299.99488 * 12 11 10 14 14 C 1.52996 * 109.47328 * 59.99957 * 12 11 10 15 15 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00420 * 19 17 15 22 22 H 1.48498 * 109.46942 * 240.00334 * 19 17 15 23 23 C 1.53878 * 110.03214 * 238.60521 * 2 1 3 24 24 H 1.08994 * 109.47177 * 181.39086 * 1 2 3 25 25 H 1.09001 * 109.47000 * 301.39442 * 1 2 3 26 26 H 1.09005 * 109.46529 * 61.39310 * 1 2 3 27 27 H 1.08996 * 110.48814 * 261.57134 * 4 2 1 28 28 H 1.09005 * 110.48758 * 24.08651 * 4 2 1 29 29 H 1.09002 * 110.75817 * 203.73877 * 5 4 2 30 30 H 1.09000 * 110.75335 * 80.37357 * 5 4 2 31 31 H 1.09002 * 109.47379 * 59.99613 * 11 10 8 32 32 H 1.09001 * 109.46782 * 299.99696 * 11 10 8 33 33 H 1.09000 * 109.46986 * 60.00203 * 13 12 11 34 34 H 1.08993 * 109.47662 * 180.02562 * 13 12 11 35 35 H 1.09002 * 109.47075 * 300.00932 * 13 12 11 36 36 H 1.08992 * 109.47554 * 59.99639 * 14 12 11 37 37 H 1.09004 * 109.47108 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.46870 * 299.99783 * 14 12 11 39 39 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.02672 * 121.43045 * 23 2 1 41 41 H 1.09004 * 110.03173 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7560 1.2366 5 6 3.3136 -1.5011 0.7185 6 6 2.8875 -1.9404 -0.7044 7 1 2.2777 -2.8429 -0.6605 8 6 4.0989 -2.1655 -1.5719 9 8 4.2976 -1.4544 -2.5283 10 8 4.9572 -3.1561 -1.2822 11 6 6.1024 -3.3141 -2.1608 12 6 6.9604 -4.4839 -1.6748 13 6 7.4451 -4.2039 -0.2509 14 6 6.1273 -5.7671 -1.6870 15 6 8.1486 -4.6483 -2.5871 16 1 8.2789 -3.9845 -3.4291 17 6 9.0699 -5.6455 -2.3463 18 7 8.9115 -6.4534 -1.3208 19 14 10.5423 -5.8497 -3.4776 20 1 10.4897 -4.8227 -4.5488 21 1 11.7940 -5.6851 -2.6955 22 1 10.5140 -7.2035 -4.0873 23 6 2.0572 -0.7531 -1.2340 24 1 -0.3633 -1.0273 0.0249 25 1 -0.3633 0.5353 0.8772 26 1 -0.3632 0.4921 -0.9023 27 1 2.3297 -0.0545 2.0255 28 1 1.3133 -1.4651 1.5974 29 1 3.5325 -2.3685 1.3413 30 1 4.1710 -0.8295 0.6748 31 1 6.6961 -2.4000 -2.1519 32 1 5.7571 -3.5131 -3.1754 33 1 6.5855 -4.0852 0.4088 34 1 8.0567 -5.0370 0.0953 35 1 8.0385 -3.2896 -0.2422 36 1 5.7821 -5.9666 -2.7013 37 1 6.7388 -6.6006 -1.3411 38 1 5.2677 -5.6484 -1.0273 39 1 9.5598 -7.1547 -1.1512 40 1 2.6867 -0.0946 -1.8324 41 1 1.2229 -1.1182 -1.8332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764824976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:14 Heat of formation + Delta-G solvation = -121.529291 kcal Electronic energy + Delta-G solvation = -19467.497533 eV Core-core repulsion = 16539.175999 eV Total energy + Delta-G solvation = -2928.321534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22370 -38.13890 -36.39754 -34.79970 -31.72493 -31.14964 -29.02789 -26.24704 -25.60646 -25.33598 -24.77772 -22.16849 -20.34550 -19.26937 -18.81873 -17.49343 -16.03860 -15.91049 -15.74834 -15.00597 -14.80630 -14.37330 -13.56176 -13.45784 -13.09307 -12.96612 -12.76006 -12.27831 -12.00005 -11.60884 -11.44901 -11.27216 -11.10774 -10.96635 -10.92729 -10.87788 -10.81673 -10.66133 -10.52704 -10.40433 -10.19227 -9.91047 -9.86396 -9.38961 -9.27739 -8.73549 -8.37316 -6.01334 -4.12786 2.66704 3.27083 3.27284 3.35696 3.41481 4.38444 4.39247 4.48202 4.68085 5.11769 5.17508 5.25086 5.27898 5.36864 5.44765 5.46950 5.51507 5.66398 5.82605 5.85281 5.95228 5.98264 6.11543 6.13082 6.14059 6.26124 6.29920 6.49378 6.77175 6.99761 7.11446 7.15527 7.18756 7.42453 7.63531 7.70963 8.06253 8.17127 8.31379 8.41505 8.87445 9.52732 10.99879 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.050141 B = 0.004241 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.287334 B = 6600.886881 C = 6835.003913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.111 4.111 6 C -0.088 4.088 7 H 0.107 0.893 8 C 0.459 3.541 9 O -0.522 6.522 10 O -0.346 6.346 11 C 0.083 3.917 12 C 0.069 3.931 13 C -0.128 4.128 14 C -0.129 4.129 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.068 3.932 18 N -0.882 5.882 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.112 4.112 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.017 0.983 34 H 0.084 0.916 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.084 0.916 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.084 0.916 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 8.763 5.129 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.107 4.107 7 H 0.126 0.874 8 C 0.302 3.698 9 O -0.412 6.412 10 O -0.262 6.262 11 C 0.011 3.989 12 C 0.069 3.931 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.520 5.520 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.150 4.150 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.102 0.898 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.563 8.786 4.916 16.891 hybrid contribution 0.925 -0.106 -0.851 1.261 sum -12.638 8.680 4.065 15.862 Atomic orbital electron populations 1.21892 0.94969 1.01824 1.01484 1.21764 0.95658 0.99598 0.94612 0.90869 1.22464 0.97043 0.99002 0.97168 1.22447 0.98156 1.00814 0.93435 1.21852 0.92733 1.00950 0.95197 0.87449 1.23488 0.84370 0.78158 0.83793 1.90594 1.74940 1.46465 1.29165 1.86527 1.35387 1.48926 1.55356 1.23651 0.82796 1.00913 0.91571 1.18246 0.91647 0.88868 0.94340 1.21756 0.98799 1.01107 0.96941 1.21760 0.97534 1.01456 0.97894 1.20991 1.06730 1.15558 1.11664 0.92490 1.24858 0.97801 0.95419 0.95296 1.69839 1.35779 1.18587 1.27835 0.86492 0.82472 0.77999 0.80780 1.19779 1.20962 1.20958 1.22248 0.99159 0.96013 0.97563 0.92508 0.92795 0.92731 0.91352 0.91118 0.90003 0.90929 0.92681 0.92676 0.96433 0.89774 0.95907 0.95897 0.89760 0.96456 0.92979 0.89772 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 2 C -0.10 -0.91 3.50 -89.50 -0.31 -1.23 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -1.08 6.36 -25.07 -0.16 -1.24 16 5 C -0.11 -1.28 6.32 -24.74 -0.16 -1.44 16 6 C -0.09 -1.16 3.36 -90.12 -0.30 -1.46 16 7 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 8 C 0.46 8.27 7.25 36.00 0.26 8.54 16 9 O -0.52 -10.69 15.17 -18.75 -0.28 -10.98 16 10 O -0.35 -7.05 8.88 -39.26 -0.35 -7.39 16 11 C 0.08 1.90 4.26 37.16 0.16 2.05 16 12 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 13 C -0.13 -3.11 8.11 37.16 0.30 -2.81 16 14 C -0.13 -3.14 8.11 37.16 0.30 -2.83 16 15 C -0.51 -13.82 8.01 -34.44 -0.28 -14.10 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 18 N -0.88 -24.07 9.35 55.43 0.52 -23.56 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.11 -1.31 5.84 -25.61 -0.15 -1.46 16 24 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 31 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.05 1.27 8.13 -51.93 -0.42 0.84 16 33 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 38 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.08 1.14 6.85 -51.93 -0.36 0.79 16 41 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -28.58 323.43 -7.65 -36.23 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.20 Total: -1.69 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.19 Total: -13.41 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.52 Total: -23.56 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.63 Total: -18.37 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.58 -7.65 -36.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764824976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.304 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds