Wall clock time and date at job start Mon Mar 30 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.02025 * 2 1 4 4 C 1.54267 * 110.02970 * 121.44028 * 2 1 3 5 5 C 1.54893 * 104.19306 * 142.89118 * 4 2 1 6 6 C 1.54887 * 102.75285 * 322.06125 * 5 4 2 7 7 H 1.09006 * 110.59444 * 279.20991 * 6 5 4 8 8 C 1.50698 * 110.48986 * 156.61992 * 6 5 4 9 9 O 1.20822 * 119.99804 * 245.22505 * 8 6 5 10 10 O 1.34231 * 120.00053 * 65.22490 * 8 6 5 11 11 C 1.45198 * 116.99983 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47233 * 299.99488 * 12 11 10 14 14 C 1.52996 * 109.47328 * 59.99957 * 12 11 10 15 15 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00420 * 19 17 15 22 22 H 1.48498 * 109.46942 * 240.00334 * 19 17 15 23 23 C 1.53878 * 110.03214 * 238.60521 * 2 1 3 24 24 H 1.08994 * 109.47177 * 181.39086 * 1 2 3 25 25 H 1.09001 * 109.47000 * 301.39442 * 1 2 3 26 26 H 1.09005 * 109.46529 * 61.39310 * 1 2 3 27 27 H 1.08996 * 110.48814 * 261.57134 * 4 2 1 28 28 H 1.09005 * 110.48758 * 24.08651 * 4 2 1 29 29 H 1.09002 * 110.75817 * 203.73877 * 5 4 2 30 30 H 1.09000 * 110.75335 * 80.37357 * 5 4 2 31 31 H 1.09002 * 109.47379 * 59.99613 * 11 10 8 32 32 H 1.09001 * 109.46782 * 299.99696 * 11 10 8 33 33 H 1.09000 * 109.46986 * 60.00203 * 13 12 11 34 34 H 1.08993 * 109.47662 * 180.02562 * 13 12 11 35 35 H 1.09002 * 109.47075 * 300.00932 * 13 12 11 36 36 H 1.08992 * 109.47554 * 59.99639 * 14 12 11 37 37 H 1.09004 * 109.47108 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.46870 * 299.99783 * 14 12 11 39 39 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.02672 * 121.43045 * 23 2 1 41 41 H 1.09004 * 110.03173 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7560 1.2366 5 6 3.3136 -1.5011 0.7185 6 6 2.8875 -1.9404 -0.7044 7 1 2.2777 -2.8429 -0.6605 8 6 4.0989 -2.1655 -1.5719 9 8 4.2976 -1.4544 -2.5283 10 8 4.9572 -3.1561 -1.2822 11 6 6.1024 -3.3141 -2.1608 12 6 6.9604 -4.4839 -1.6748 13 6 7.4451 -4.2039 -0.2509 14 6 6.1273 -5.7671 -1.6870 15 6 8.1486 -4.6483 -2.5871 16 1 8.2789 -3.9845 -3.4291 17 6 9.0699 -5.6455 -2.3463 18 7 8.9115 -6.4534 -1.3208 19 14 10.5423 -5.8497 -3.4776 20 1 10.4897 -4.8227 -4.5488 21 1 11.7940 -5.6851 -2.6955 22 1 10.5140 -7.2035 -4.0873 23 6 2.0572 -0.7531 -1.2340 24 1 -0.3633 -1.0273 0.0249 25 1 -0.3633 0.5353 0.8772 26 1 -0.3632 0.4921 -0.9023 27 1 2.3297 -0.0545 2.0255 28 1 1.3133 -1.4651 1.5974 29 1 3.5325 -2.3685 1.3413 30 1 4.1710 -0.8295 0.6748 31 1 6.6961 -2.4000 -2.1519 32 1 5.7571 -3.5131 -3.1754 33 1 6.5855 -4.0852 0.4088 34 1 8.0567 -5.0370 0.0953 35 1 8.0385 -3.2896 -0.2422 36 1 5.7821 -5.9666 -2.7013 37 1 6.7388 -6.6006 -1.3411 38 1 5.2677 -5.6484 -1.0273 39 1 9.5598 -7.1547 -1.1512 40 1 2.6867 -0.0946 -1.8324 41 1 1.2229 -1.1182 -1.8332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764824976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:13 Heat of formation + Delta-G solvation = -134.565193 kcal Electronic energy + Delta-G solvation = -19468.062812 eV Core-core repulsion = 16539.175999 eV Total energy + Delta-G solvation = -2928.886813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66438 -39.25826 -38.04470 -36.60622 -33.32881 -32.43183 -29.93081 -27.77993 -27.58494 -27.22684 -26.03995 -23.37456 -21.39584 -20.72438 -20.26520 -18.88509 -17.80824 -17.51382 -17.34065 -16.68579 -15.97564 -15.53196 -14.95632 -14.78421 -14.53676 -14.31483 -14.02343 -13.65074 -13.34533 -13.19283 -12.98593 -12.84847 -12.67387 -12.61452 -12.34530 -12.17648 -12.15025 -11.76570 -11.74256 -11.70842 -11.55952 -11.45553 -11.31199 -11.27088 -11.11120 -10.74017 -10.41873 -8.05889 -6.24138 1.21443 1.41152 1.43972 1.53954 1.83784 2.44668 3.17349 3.45828 3.56993 3.77706 4.11337 4.23923 4.26840 4.34353 4.37643 4.47817 4.51129 4.59989 4.68264 4.75092 4.84187 4.97829 5.00474 5.03431 5.13095 5.14650 5.19049 5.21854 5.28387 5.34848 5.37588 5.38086 5.58267 5.60002 5.62603 5.67756 6.06513 6.16565 6.35992 6.76048 6.83541 7.43940 8.93920 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.050141 B = 0.004241 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.287334 B = 6600.886881 C = 6835.003913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.085 4.085 7 H 0.129 0.871 8 C 0.454 3.546 9 O -0.550 6.550 10 O -0.350 6.350 11 C 0.096 3.904 12 C 0.060 3.940 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.535 4.535 16 H 0.047 0.953 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.111 4.111 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.059 0.941 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 9.087 5.979 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.150 4.150 6 C -0.104 4.104 7 H 0.146 0.854 8 C 0.300 3.700 9 O -0.441 6.441 10 O -0.266 6.266 11 C 0.022 3.978 12 C 0.060 3.940 13 C -0.174 4.174 14 C -0.175 4.175 15 C -0.573 4.573 16 H 0.065 0.935 17 C -0.172 4.172 18 N -0.537 5.537 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.149 4.149 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.897 9.116 5.776 18.395 hybrid contribution 1.305 -0.177 -1.117 1.727 sum -13.592 8.939 4.659 16.922 Atomic orbital electron populations 1.21871 0.93394 1.02424 1.02184 1.21752 0.96901 0.99212 0.93428 0.90883 1.22453 0.95914 0.99236 0.97180 1.22494 0.99049 1.01043 0.92412 1.22091 0.90616 1.02524 0.95130 0.85354 1.24554 0.84795 0.76793 0.83896 1.90583 1.75670 1.47211 1.30672 1.86525 1.35081 1.50141 1.54846 1.23227 0.83496 0.99636 0.91426 1.18275 0.91631 0.89813 0.94283 1.21600 0.98959 0.99943 0.96938 1.21608 0.97581 1.00424 0.97902 1.21233 1.08111 1.15911 1.12074 0.93457 1.25506 0.99994 0.95112 0.96543 1.69940 1.36430 1.18685 1.28618 0.85590 0.79576 0.77879 0.79070 1.19851 1.20445 1.20441 1.22273 0.98796 0.95191 0.98597 0.91984 0.91524 0.92656 0.90037 0.89471 0.89588 0.92378 0.93626 0.93567 0.94785 0.91774 0.96283 0.96244 0.91755 0.94822 0.92788 0.92256 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.85 71.98 0.64 -1.12 16 2 C -0.09 -1.53 3.50 -10.07 -0.04 -1.57 16 3 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -1.67 6.36 31.67 0.20 -1.47 16 5 C -0.11 -2.39 6.32 31.89 0.20 -2.19 16 6 C -0.08 -2.09 3.36 -10.47 -0.04 -2.13 16 7 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 8 C 0.45 16.24 7.25 71.24 0.52 16.76 16 9 O -0.55 -22.82 15.17 21.98 0.33 -22.49 16 10 O -0.35 -14.11 8.88 -51.42 -0.46 -14.56 16 11 C 0.10 4.39 4.26 71.98 0.31 4.70 16 12 C 0.06 3.01 0.58 -52.93 -0.03 2.98 16 13 C -0.12 -5.66 8.11 71.98 0.58 -5.08 16 14 C -0.12 -5.70 8.11 71.98 0.58 -5.12 16 15 C -0.54 -29.23 8.01 25.60 0.21 -29.03 16 16 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 17 C 0.03 1.53 5.15 84.66 0.44 1.97 16 18 N -0.90 -49.10 9.35 21.45 0.20 -48.90 16 19 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C -0.11 -2.43 5.84 31.32 0.18 -2.24 16 24 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.07 7.83 -2.38 -0.02 1.05 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.40 8.05 -2.39 -0.02 1.38 16 31 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 32 H 0.05 2.17 8.13 -2.39 -0.02 2.15 16 33 H 0.03 1.48 7.68 -2.39 -0.02 1.46 16 34 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 3.38 6.07 -2.38 -0.01 3.37 16 38 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 39 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 40 H 0.06 1.60 6.85 -2.39 -0.02 1.59 16 41 H 0.08 1.58 7.67 -2.38 -0.02 1.56 16 Total: -1.00 -60.74 323.43 6.83 -53.90 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.98 Total: 10.59 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 3.75 Total: -23.52 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.20 Total: -48.90 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.12 Total: -37.05 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -60.74 6.83 -53.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764824976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.661 kcal (2) G-P(sol) polarization free energy of solvation -60.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds