Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47340 * 2 1 4 4 C 1.52995 * 109.47530 * 120.00310 * 2 1 3 5 5 C 1.50700 * 109.47226 * 294.99957 * 4 2 1 6 6 O 1.20830 * 120.00010 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00083 * 179.97438 * 5 4 2 8 8 C 1.45200 * 116.99557 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46828 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46996 * 299.99870 * 9 8 7 11 11 C 1.52995 * 109.46997 * 59.99867 * 9 8 7 12 12 C 1.50699 * 109.47095 * 180.02562 * 9 8 7 13 13 H 1.08002 * 120.00426 * 1.35296 * 12 9 8 14 14 C 1.37877 * 119.99859 * 181.36206 * 12 9 8 15 15 N 1.31517 * 119.99722 * 193.95657 * 14 12 9 16 16 Si 1.86801 * 120.00063 * 13.95841 * 14 12 9 17 17 H 1.48502 * 109.47101 * 84.55623 * 16 14 12 18 18 H 1.48497 * 109.47001 * 204.55607 * 16 14 12 19 19 H 1.48496 * 109.47058 * 324.55850 * 16 14 12 20 20 C 1.53000 * 109.46904 * 240.00141 * 2 1 3 21 21 C 1.53000 * 117.49921 * 128.61987 * 20 2 1 22 22 C 1.53003 * 60.00139 * 252.51335 * 21 20 2 23 23 H 1.08999 * 109.47902 * 59.99689 * 1 2 3 24 24 H 1.09005 * 109.47011 * 299.99500 * 1 2 3 25 25 H 1.08998 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47122 * 54.99734 * 4 2 1 27 27 H 1.09000 * 109.47315 * 174.99511 * 4 2 1 28 28 H 1.09001 * 109.47488 * 299.99878 * 8 7 5 29 29 H 1.09002 * 109.47403 * 60.00452 * 8 7 5 30 30 H 1.09009 * 109.46907 * 69.31578 * 10 9 8 31 31 H 1.08994 * 109.47095 * 189.31522 * 10 9 8 32 32 H 1.09000 * 109.47258 * 309.31882 * 10 9 8 33 33 H 1.09001 * 109.47177 * 60.00434 * 11 9 8 34 34 H 1.09004 * 109.46849 * 180.02562 * 11 9 8 35 35 H 1.08999 * 109.47614 * 299.99724 * 11 9 8 36 36 H 0.97002 * 119.99441 * 179.97438 * 15 14 12 37 37 H 1.08994 * 115.55172 * 274.32790 * 20 2 1 38 38 H 1.09002 * 117.49724 * 359.97438 * 21 20 2 39 39 H 1.08996 * 117.50106 * 145.01999 * 21 20 2 40 40 H 1.09000 * 117.49472 * 252.51209 * 22 21 20 41 41 H 1.09001 * 117.49771 * 107.49260 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4766 6 8 1.0141 1.0835 2.3638 7 8 1.9833 -0.3903 3.6951 8 6 1.5662 0.4108 4.8321 9 6 2.0437 -0.2524 6.1257 10 6 1.4343 -1.6514 6.2366 11 6 3.5697 -0.3605 6.1102 12 6 1.6103 0.5786 7.3058 13 1 1.0316 1.4772 7.1502 14 6 1.9528 0.1920 8.5842 15 7 1.3587 0.7441 9.6195 16 14 3.2605 -1.1161 8.8456 17 1 4.6044 -0.4846 8.8194 18 1 3.0477 -1.7729 10.1602 19 1 3.1691 -2.1303 7.7648 20 6 2.0399 -0.7212 -1.2493 21 6 3.0740 0.0052 -2.1118 22 6 1.6355 -0.1494 -2.6096 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.6054 -1.7198 1.2950 27 1 3.1264 -0.7995 1.2054 28 1 2.0006 1.4074 4.7534 29 1 0.4790 0.4881 4.8429 30 1 1.8748 -2.3006 5.4797 31 1 1.6372 -2.0586 7.2270 32 1 0.3570 -1.5919 6.0818 33 1 4.0038 0.6363 6.0313 34 1 3.9098 -0.8333 7.0316 35 1 3.8828 -0.9618 5.2567 36 1 1.5994 0.4718 10.5189 37 1 2.1266 -1.8044 -1.1643 38 1 3.3907 0.9971 -1.7894 39 1 3.8414 -0.6000 -2.5943 40 1 1.4566 -0.8565 -3.4197 41 1 1.0063 0.7406 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764838604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -68.531855 kcal Electronic energy + Delta-G solvation = -19255.782151 eV Core-core repulsion = 16329.758759 eV Total energy + Delta-G solvation = -2926.023392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21692 -38.28727 -36.81803 -35.06229 -33.31940 -31.73277 -28.44066 -26.32625 -26.07343 -24.92155 -23.87202 -22.48765 -20.72867 -19.80453 -19.12725 -17.28197 -16.27334 -16.00064 -15.94109 -15.55107 -15.24078 -14.42801 -14.16989 -13.36857 -13.25105 -13.10079 -12.85807 -12.42090 -12.26067 -11.99828 -11.88524 -11.81866 -11.66633 -11.43436 -11.24154 -10.92248 -10.52694 -10.46205 -10.34233 -10.24309 -10.11745 -10.06688 -9.86568 -9.71393 -9.10124 -8.64930 -8.46954 -6.16304 -4.14521 2.57089 3.14034 3.27083 3.35624 3.40418 3.58390 4.36483 4.44546 4.58292 4.70213 4.83320 5.04582 5.15516 5.20521 5.29320 5.40099 5.46197 5.55642 5.67249 5.69844 5.77976 5.80001 5.89567 5.91646 6.01186 6.14922 6.22769 6.26654 6.36051 6.53547 6.58685 6.71116 6.78315 6.89194 7.09980 7.22665 7.44610 7.70704 8.20289 8.41843 8.86277 9.47313 10.96495 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.048308 B = 0.004136 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.474847 B = 6768.985653 C = 7013.804388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.049 4.049 3 H 0.079 0.921 4 C -0.109 4.109 5 C 0.454 3.546 6 O -0.515 6.515 7 O -0.356 6.356 8 C 0.093 3.907 9 C 0.042 3.958 10 C -0.139 4.139 11 C -0.146 4.146 12 C -0.519 4.519 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.891 5.891 16 Si 0.885 3.115 17 H -0.285 1.285 18 H -0.304 1.304 19 H -0.246 1.246 20 C -0.148 4.148 21 C -0.182 4.182 22 C -0.178 4.178 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -5.134 -20.436 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 H 0.098 0.902 4 C -0.147 4.147 5 C 0.297 3.703 6 O -0.404 6.404 7 O -0.272 6.272 8 C 0.021 3.979 9 C 0.042 3.958 10 C -0.196 4.196 11 C -0.202 4.202 12 C -0.557 4.557 13 H 0.093 0.907 14 C -0.125 4.125 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.212 1.212 18 H -0.233 1.233 19 H -0.172 1.172 20 C -0.166 4.166 21 C -0.219 4.219 22 C -0.215 4.215 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.358 -4.800 -20.210 20.905 hybrid contribution 0.694 -0.467 0.378 0.918 sum 3.052 -5.267 -19.832 20.745 Atomic orbital electron populations 1.21952 0.94248 1.01754 1.03045 1.20532 0.96605 0.99074 0.90501 0.90215 1.21412 1.03731 1.00057 0.89487 1.23574 0.76658 0.84347 0.85698 1.90607 1.37591 1.24747 1.87470 1.86485 1.71908 1.53527 1.15277 1.23378 0.99402 0.93422 0.81730 1.18584 0.92173 0.93983 0.91105 1.22219 0.99742 0.97331 1.00345 1.22285 0.98358 1.00429 0.99162 1.20677 1.35762 1.10676 0.88551 0.90652 1.24919 0.95864 0.96002 0.95700 1.69949 1.40312 1.43767 0.98679 0.87281 0.82059 0.83012 0.75896 1.21238 1.23320 1.17193 1.22318 1.03662 0.99201 0.91406 1.23045 0.92484 1.02159 1.04183 1.22926 0.98122 1.03367 0.97071 0.92732 0.90642 0.93033 0.87958 0.87918 0.91899 0.91780 0.94945 0.92741 0.93836 0.93225 0.94208 0.94091 0.92462 0.87622 0.88729 0.88920 0.88941 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.77 37.16 0.33 -1.37 16 2 C -0.05 -0.51 2.19 -90.62 -0.20 -0.71 16 3 H 0.08 0.94 7.71 -51.93 -0.40 0.54 16 4 C -0.11 -1.23 5.27 -27.89 -0.15 -1.38 16 5 C 0.45 7.32 7.67 36.01 0.28 7.59 16 6 O -0.51 -9.54 13.72 -18.75 -0.26 -9.80 16 7 O -0.36 -6.53 9.06 -39.26 -0.36 -6.88 16 8 C 0.09 1.97 4.25 37.16 0.16 2.13 16 9 C 0.04 0.98 0.58 -155.66 -0.09 0.89 16 10 C -0.14 -3.04 7.58 37.16 0.28 -2.76 16 11 C -0.15 -3.17 7.55 37.16 0.28 -2.89 16 12 C -0.52 -14.30 8.62 -34.44 -0.30 -14.60 16 13 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.08 2.21 5.32 -17.82 -0.09 2.11 16 15 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 16 Si 0.89 21.55 22.79 -169.99 -3.87 17.68 16 17 H -0.28 -6.88 7.10 56.52 0.40 -6.47 16 18 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.25 -5.55 4.65 56.52 0.26 -5.28 16 20 C -0.15 -1.25 5.15 -90.62 -0.47 -1.72 16 21 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 22 C -0.18 -1.38 9.73 -26.73 -0.26 -1.64 16 23 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 24 H 0.07 1.04 5.96 -51.93 -0.31 0.73 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.35 8.13 -51.93 -0.42 0.92 16 29 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 30 H 0.03 0.63 7.94 -51.92 -0.41 0.22 16 31 H 0.05 1.24 4.30 -51.93 -0.22 1.01 16 32 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 35 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 38 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.75 7.61 -51.93 -0.40 0.36 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -30.20 317.68 -6.40 -36.60 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.97 Total: -0.24 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -0.50 Total: -16.05 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.10 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.61 Total: -16.68 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -3.87 Total: 17.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.20 -6.40 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.931 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds