Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47340 * 2 1 4 4 C 1.52995 * 109.47530 * 120.00310 * 2 1 3 5 5 C 1.50700 * 109.47226 * 294.99957 * 4 2 1 6 6 O 1.20830 * 120.00010 * 359.97438 * 5 4 2 7 7 O 1.34231 * 120.00083 * 179.97438 * 5 4 2 8 8 C 1.45200 * 116.99557 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46828 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46996 * 299.99870 * 9 8 7 11 11 C 1.52995 * 109.46997 * 59.99867 * 9 8 7 12 12 C 1.50699 * 109.47095 * 180.02562 * 9 8 7 13 13 H 1.08002 * 120.00426 * 1.35296 * 12 9 8 14 14 C 1.37877 * 119.99859 * 181.36206 * 12 9 8 15 15 N 1.31517 * 119.99722 * 193.95657 * 14 12 9 16 16 Si 1.86801 * 120.00063 * 13.95841 * 14 12 9 17 17 H 1.48502 * 109.47101 * 84.55623 * 16 14 12 18 18 H 1.48497 * 109.47001 * 204.55607 * 16 14 12 19 19 H 1.48496 * 109.47058 * 324.55850 * 16 14 12 20 20 C 1.53000 * 109.46904 * 240.00141 * 2 1 3 21 21 C 1.53000 * 117.49921 * 128.61987 * 20 2 1 22 22 C 1.53003 * 60.00139 * 252.51335 * 21 20 2 23 23 H 1.08999 * 109.47902 * 59.99689 * 1 2 3 24 24 H 1.09005 * 109.47011 * 299.99500 * 1 2 3 25 25 H 1.08998 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47122 * 54.99734 * 4 2 1 27 27 H 1.09000 * 109.47315 * 174.99511 * 4 2 1 28 28 H 1.09001 * 109.47488 * 299.99878 * 8 7 5 29 29 H 1.09002 * 109.47403 * 60.00452 * 8 7 5 30 30 H 1.09009 * 109.46907 * 69.31578 * 10 9 8 31 31 H 1.08994 * 109.47095 * 189.31522 * 10 9 8 32 32 H 1.09000 * 109.47258 * 309.31882 * 10 9 8 33 33 H 1.09001 * 109.47177 * 60.00434 * 11 9 8 34 34 H 1.09004 * 109.46849 * 180.02562 * 11 9 8 35 35 H 1.08999 * 109.47614 * 299.99724 * 11 9 8 36 36 H 0.97002 * 119.99441 * 179.97438 * 15 14 12 37 37 H 1.08994 * 115.55172 * 274.32790 * 20 2 1 38 38 H 1.09002 * 117.49724 * 359.97438 * 21 20 2 39 39 H 1.08996 * 117.50106 * 145.01999 * 21 20 2 40 40 H 1.09000 * 117.49472 * 252.51209 * 22 21 20 41 41 H 1.09001 * 117.49771 * 107.49260 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4766 6 8 1.0141 1.0835 2.3638 7 8 1.9833 -0.3903 3.6951 8 6 1.5662 0.4108 4.8321 9 6 2.0437 -0.2524 6.1257 10 6 1.4343 -1.6514 6.2366 11 6 3.5697 -0.3605 6.1102 12 6 1.6103 0.5786 7.3058 13 1 1.0316 1.4772 7.1502 14 6 1.9528 0.1920 8.5842 15 7 1.3587 0.7441 9.6195 16 14 3.2605 -1.1161 8.8456 17 1 4.6044 -0.4846 8.8194 18 1 3.0477 -1.7729 10.1602 19 1 3.1691 -2.1303 7.7648 20 6 2.0399 -0.7212 -1.2493 21 6 3.0740 0.0052 -2.1118 22 6 1.6355 -0.1494 -2.6096 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.6054 -1.7198 1.2950 27 1 3.1264 -0.7995 1.2054 28 1 2.0006 1.4074 4.7534 29 1 0.4790 0.4881 4.8429 30 1 1.8748 -2.3006 5.4797 31 1 1.6372 -2.0586 7.2270 32 1 0.3570 -1.5919 6.0818 33 1 4.0038 0.6363 6.0313 34 1 3.9098 -0.8333 7.0316 35 1 3.8828 -0.9618 5.2567 36 1 1.5994 0.4718 10.5189 37 1 2.1266 -1.8044 -1.1643 38 1 3.3907 0.9971 -1.7894 39 1 3.8414 -0.6000 -2.5943 40 1 1.4566 -0.8565 -3.4197 41 1 1.0063 0.7406 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764838604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -85.434384 kcal Electronic energy + Delta-G solvation = -19256.515100 eV Core-core repulsion = 16329.758759 eV Total energy + Delta-G solvation = -2926.756341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55835 -39.20874 -38.28867 -36.69536 -34.20324 -33.83998 -29.53200 -28.03078 -27.62574 -26.98754 -24.81368 -23.06807 -21.95862 -20.95094 -20.62556 -18.66019 -17.97112 -17.58374 -17.33093 -16.99934 -16.37692 -15.51365 -15.33417 -14.88340 -14.73297 -14.50493 -14.21225 -13.95751 -13.76208 -13.66465 -13.41655 -12.96925 -12.43564 -12.42017 -12.30850 -12.20895 -12.10006 -11.98283 -11.86047 -11.76852 -11.44775 -11.28909 -11.09921 -10.99276 -10.78411 -10.63684 -10.41365 -8.34680 -6.37528 1.28938 1.36376 1.37799 1.50342 1.82568 2.32519 2.95569 3.01514 3.65014 3.69044 4.02078 4.03980 4.08205 4.13604 4.22583 4.35385 4.40286 4.48933 4.58857 4.64462 4.72093 4.80226 4.83396 4.85144 4.87619 4.94430 4.98428 5.10078 5.10219 5.16227 5.22920 5.33055 5.38997 5.43927 5.47058 5.63833 5.70368 5.74654 6.24216 6.65561 6.84513 7.27992 8.82155 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.048308 B = 0.004136 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.474847 B = 6768.985653 C = 7013.804388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 H 0.061 0.939 4 C -0.100 4.100 5 C 0.449 3.551 6 O -0.544 6.544 7 O -0.353 6.353 8 C 0.106 3.894 9 C 0.037 3.963 10 C -0.136 4.136 11 C -0.144 4.144 12 C -0.525 4.525 13 H 0.030 0.970 14 C 0.022 3.978 15 N -0.942 5.942 16 Si 0.943 3.057 17 H -0.278 1.278 18 H -0.310 1.310 19 H -0.209 1.209 20 C -0.148 4.148 21 C -0.182 4.182 22 C -0.178 4.178 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.267 0.733 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -7.913 -22.835 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 H 0.079 0.921 4 C -0.137 4.137 5 C 0.294 3.706 6 O -0.435 6.435 7 O -0.269 6.269 8 C 0.032 3.968 9 C 0.036 3.964 10 C -0.193 4.193 11 C -0.200 4.200 12 C -0.563 4.563 13 H 0.048 0.952 14 C -0.176 4.176 15 N -0.581 5.581 16 Si 0.772 3.228 17 H -0.206 1.206 18 H -0.239 1.239 19 H -0.133 1.133 20 C -0.166 4.166 21 C -0.219 4.219 22 C -0.215 4.215 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.150 -7.583 -22.653 24.246 hybrid contribution 0.029 0.529 1.032 1.160 sum 4.179 -7.054 -21.620 23.123 Atomic orbital electron populations 1.21915 0.94940 1.02216 1.01789 1.20481 0.96023 0.98450 0.91489 0.92096 1.21592 1.05322 1.00205 0.86545 1.24674 0.75649 0.84340 0.85917 1.90615 1.38907 1.26374 1.87601 1.86471 1.72092 1.52915 1.15409 1.22895 0.98222 0.93049 0.82641 1.18532 0.93707 0.94111 0.90012 1.22148 0.99796 0.96586 1.00819 1.22228 0.96517 1.01015 1.00264 1.20957 1.34814 1.09787 0.90756 0.95166 1.25792 0.97909 0.98681 0.95203 1.70094 1.42439 1.46265 0.99321 0.86331 0.78877 0.81090 0.76513 1.20555 1.23908 1.13266 1.22251 1.04125 0.99807 0.90378 1.23107 0.92855 1.01992 1.03909 1.22997 0.98023 1.03397 0.97098 0.92023 0.93867 0.91660 0.85404 0.85490 0.93206 0.93381 0.91781 0.93555 0.94187 0.93529 0.94613 0.90870 0.92400 0.85894 0.89472 0.87500 0.87532 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.77 71.98 0.63 -2.54 16 2 C -0.05 -0.87 2.19 -10.80 -0.02 -0.89 16 3 H 0.06 1.39 7.71 -2.39 -0.02 1.37 16 4 C -0.10 -1.92 5.27 29.85 0.16 -1.76 16 5 C 0.45 13.79 7.67 71.24 0.55 14.34 16 6 O -0.54 -20.31 13.72 21.95 0.30 -20.01 16 7 O -0.35 -12.20 9.06 -51.43 -0.47 -12.67 16 8 C 0.11 4.45 4.25 71.98 0.31 4.76 16 9 C 0.04 1.68 0.58 -52.93 -0.03 1.65 16 10 C -0.14 -5.62 7.58 71.98 0.55 -5.07 16 11 C -0.14 -5.83 7.55 71.98 0.54 -5.29 16 12 C -0.53 -29.73 8.62 25.60 0.22 -29.51 16 13 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 14 C 0.02 1.28 5.32 84.65 0.45 1.73 16 15 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 16 Si 0.94 43.61 22.79 68.60 1.56 45.18 16 17 H -0.28 -12.54 7.10 99.48 0.71 -11.83 16 18 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 19 H -0.21 -8.41 4.65 99.48 0.46 -7.95 16 20 C -0.15 -2.02 5.15 -10.79 -0.06 -2.08 16 21 C -0.18 -2.36 10.18 30.60 0.31 -2.05 16 22 C -0.18 -2.31 9.73 30.60 0.30 -2.01 16 23 H 0.06 1.17 7.29 -2.39 -0.02 1.15 16 24 H 0.04 1.19 5.96 -2.38 -0.01 1.17 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 29 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 30 H 0.06 2.23 7.94 -2.38 -0.02 2.21 16 31 H 0.05 1.97 4.30 -2.39 -0.01 1.96 16 32 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.48 2.25 -2.38 -0.01 1.47 16 35 H 0.07 2.50 7.68 -2.39 -0.02 2.48 16 36 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.12 1.32 8.11 -2.39 -0.02 1.30 16 38 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.25 7.61 -2.39 -0.02 1.24 16 Total: -1.00 -67.50 317.68 6.35 -61.15 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.75 Total: 13.56 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 3.90 Total: -28.73 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.16 Total: -32.68 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.56 Total: 45.18 kcal Total: -67.50 6.35 -61.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.280 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds