Wall clock time and date at job start Mon Mar 30 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 C 1.52995 * 109.47000 * 119.99495 * 2 1 3 5 5 C 1.53004 * 109.46989 * 172.83878 * 4 2 1 6 6 H 1.08998 * 109.47315 * 54.05103 * 5 4 2 7 7 C 1.52998 * 109.47055 * 174.05229 * 5 4 2 8 8 C 1.50698 * 109.47288 * 294.05176 * 5 4 2 9 9 O 1.20833 * 119.99753 * 358.73247 * 8 5 4 10 10 O 1.34228 * 120.00288 * 178.73736 * 8 5 4 11 11 C 1.45204 * 117.00112 * 174.83703 * 10 8 5 12 12 C 1.52996 * 109.47033 * 185.00098 * 11 10 8 13 13 C 1.50706 * 115.54980 * 305.51793 * 12 11 10 14 14 H 1.07996 * 119.99802 * 144.21411 * 13 12 11 15 15 C 1.37880 * 119.99968 * 324.21071 * 13 12 11 16 16 N 1.31521 * 119.99832 * 3.30953 * 15 13 12 17 17 Si 1.86800 * 119.99959 * 183.30997 * 15 13 12 18 18 H 1.48497 * 109.47235 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46801 * 120.00072 * 17 15 13 20 20 H 1.48499 * 109.47067 * 239.99779 * 17 15 13 21 21 C 1.52992 * 117.49835 * 159.84893 * 12 11 10 22 22 C 1.53001 * 117.49889 * 91.18609 * 12 11 10 23 23 H 1.09004 * 109.47047 * 300.00609 * 1 2 3 24 24 H 1.09002 * 109.47132 * 59.99865 * 1 2 3 25 25 H 1.08991 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46916 * 240.00162 * 2 1 3 27 27 H 1.09000 * 109.47817 * 65.63319 * 3 2 1 28 28 H 1.08998 * 109.47312 * 185.63748 * 3 2 1 29 29 H 1.09006 * 109.47409 * 305.63641 * 3 2 1 30 30 H 1.08998 * 109.46853 * 52.84109 * 4 2 1 31 31 H 1.09001 * 109.47529 * 292.84017 * 4 2 1 32 32 H 1.08996 * 109.47368 * 55.14728 * 7 5 4 33 33 H 1.08998 * 109.47164 * 295.14422 * 7 5 4 34 34 H 1.09001 * 109.47242 * 175.14642 * 7 5 4 35 35 H 1.09001 * 109.46952 * 305.00321 * 11 10 8 36 36 H 1.09003 * 109.46949 * 64.99969 * 11 10 8 37 37 H 0.96994 * 119.99658 * 185.00828 * 16 15 13 38 38 H 1.09000 * 117.50080 * 359.97438 * 21 12 11 39 39 H 1.09005 * 117.50194 * 145.02298 * 21 12 11 40 40 H 1.08997 * 117.49954 * 214.98008 * 22 12 11 41 41 H 1.08996 * 117.49958 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5594 -0.8787 1.1626 6 1 4.0165 0.0956 0.9902 7 6 4.0869 -1.4647 2.4738 8 6 3.9044 -1.8039 0.0242 9 8 3.0243 -2.3057 -0.6344 10 8 5.1892 -2.0707 -0.2582 11 6 5.4458 -3.0581 -1.2914 12 6 6.9506 -3.3183 -1.3856 13 6 7.8093 -2.0980 -1.5964 14 1 8.7821 -2.0354 -1.1314 15 6 7.3532 -1.0614 -2.3829 16 7 6.1431 -1.1086 -2.8960 17 14 8.4538 0.4098 -2.7196 18 1 9.7568 0.2207 -2.0330 19 1 8.6791 0.5349 -4.1821 20 1 7.8006 1.6431 -2.2122 21 6 7.4019 -4.6224 -2.0463 22 6 7.5269 -4.4486 -0.5305 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.7614 1.9265 0.9361 28 1 3.1253 1.4442 -0.1009 29 1 1.5966 1.9847 -0.8352 30 1 1.5758 -1.7051 1.3157 31 1 1.7850 -0.1386 2.1346 32 1 3.5669 -2.3979 2.6900 33 1 3.9140 -0.7563 3.2839 34 1 5.1558 -1.6574 2.3816 35 1 4.9314 -3.9863 -1.0428 36 1 5.0809 -2.6856 -2.2486 37 1 5.8483 -0.4158 -3.5074 38 1 6.6268 -5.2951 -2.4134 39 1 8.3202 -4.5979 -2.6330 40 1 8.5273 -4.3098 -0.1207 41 1 6.8342 -5.0065 0.0995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765610367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:23 Heat of formation + Delta-G solvation = -87.852116 kcal Electronic energy + Delta-G solvation = -19953.479712 eV Core-core repulsion = 17026.618530 eV Total energy + Delta-G solvation = -2926.861182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72706 -37.17920 -36.14039 -34.74393 -32.80338 -32.15861 -27.01431 -26.67487 -26.35433 -25.39952 -23.15144 -21.24737 -20.14378 -19.16969 -19.09356 -16.82537 -16.56466 -15.46391 -15.15161 -14.79476 -14.61530 -14.02300 -13.85048 -13.30914 -12.99211 -12.77141 -12.40094 -12.10358 -12.00765 -11.92197 -11.55292 -11.50659 -11.27647 -11.15876 -11.04936 -10.77887 -10.50142 -10.47061 -10.34284 -10.23459 -10.19434 -9.78778 -9.35877 -9.19343 -8.94097 -8.72770 -8.21918 -5.98086 -4.10556 3.14689 3.25993 3.34737 3.38475 3.71532 4.36492 4.86679 4.97271 5.05010 5.16244 5.34477 5.45297 5.50641 5.53157 5.74603 5.76105 5.83229 5.96487 5.99102 6.01953 6.04671 6.10471 6.15144 6.21598 6.25613 6.35995 6.44515 6.50951 6.58585 6.63944 6.67424 6.73623 6.84434 7.03354 7.24409 7.51094 7.73396 7.93505 8.34071 8.79672 8.91555 9.51583 10.97725 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.007182 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.963858 B = 3897.945852 C = 4616.661881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.149 4.149 4 C -0.094 4.094 5 C -0.089 4.089 6 H 0.104 0.896 7 C -0.143 4.143 8 C 0.459 3.541 9 O -0.527 6.527 10 O -0.319 6.319 11 C 0.120 3.880 12 C 0.045 3.955 13 C -0.477 4.477 14 H 0.062 0.938 15 C 0.072 3.928 16 N -0.882 5.882 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.196 4.196 22 C -0.210 4.210 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.018 0.982 36 H 0.117 0.883 37 H 0.261 0.739 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 2.134 7.674 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.206 4.206 4 C -0.131 4.131 5 C -0.108 4.108 6 H 0.122 0.878 7 C -0.200 4.200 8 C 0.302 3.698 9 O -0.419 6.419 10 O -0.233 6.233 11 C 0.047 3.953 12 C 0.044 3.956 13 C -0.515 4.515 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.520 5.520 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.234 4.234 22 C -0.247 4.247 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.036 0.964 36 H 0.134 0.866 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.458 2.125 7.380 10.705 hybrid contribution 0.547 0.613 -0.406 0.917 sum -6.911 2.738 6.974 10.193 Atomic orbital electron populations 1.21766 0.95622 1.01422 1.00934 1.21278 0.95465 0.95975 0.99939 1.21906 1.01405 0.96226 1.01056 1.21526 0.92593 1.01193 0.97829 1.21073 0.97589 0.99182 0.92957 0.87843 1.21743 1.02527 1.00795 0.94931 1.23356 0.82036 0.80397 0.84005 1.90535 1.49525 1.51295 1.50503 1.86458 1.25660 1.56805 1.54372 1.22843 0.95151 0.85755 0.91565 1.18964 0.91177 0.88478 0.96942 1.20496 1.01490 0.99397 1.30073 0.92012 1.24956 0.94651 0.97737 0.95638 1.69809 1.16405 1.34757 1.31020 0.86457 0.80663 0.82472 0.77955 1.19707 1.20968 1.20918 1.22983 1.02269 1.03836 0.94317 1.22943 1.01552 1.07289 0.92899 0.93337 0.93082 0.92801 0.89160 0.93136 0.92490 0.92994 0.91258 0.91412 0.92540 0.91772 0.90850 0.96416 0.86564 0.92893 0.91474 0.89821 0.90356 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.11 -1.59 2.70 -90.62 -0.24 -1.84 16 3 C -0.15 -1.99 8.86 37.16 0.33 -1.67 16 4 C -0.09 -1.32 3.78 -26.73 -0.10 -1.42 16 5 C -0.09 -1.43 2.73 -91.77 -0.25 -1.68 16 6 H 0.10 1.64 6.52 -51.93 -0.34 1.30 16 7 C -0.14 -1.94 9.16 37.16 0.34 -1.60 16 8 C 0.46 9.71 6.87 36.00 0.25 9.96 16 9 O -0.53 -12.10 13.85 -18.76 -0.26 -12.36 16 10 O -0.32 -7.71 9.67 -39.25 -0.38 -8.09 16 11 C 0.12 3.01 4.38 37.16 0.16 3.17 16 12 C 0.04 1.13 2.19 -155.66 -0.34 0.78 16 13 C -0.48 -12.93 8.79 -34.44 -0.30 -13.23 16 14 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 15 C 0.07 1.95 5.36 -17.82 -0.10 1.86 16 16 N -0.88 -24.43 10.25 55.43 0.57 -23.86 16 17 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.20 -4.39 9.96 -26.70 -0.27 -4.65 16 22 C -0.21 -4.58 9.93 -26.69 -0.26 -4.84 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.66 6.00 -51.93 -0.31 1.35 16 27 H 0.05 0.58 8.13 -51.93 -0.42 0.15 16 28 H 0.06 0.84 6.78 -51.93 -0.35 0.48 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 31 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.09 8.03 -51.93 -0.42 0.68 16 35 H 0.02 0.42 8.04 -51.93 -0.42 0.01 16 36 H 0.12 3.23 5.91 -51.93 -0.31 2.92 16 37 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -28.81 331.52 -7.71 -36.53 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.17 Total: 3.42 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.45 Total: -16.55 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.57 Total: -23.86 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.64 Total: -20.44 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.81 -7.71 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765610367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.326 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds