Wall clock time and date at job start Mon Mar 30 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47019 * 2 1 4 4 C 1.52995 * 109.47000 * 119.99495 * 2 1 3 5 5 C 1.53004 * 109.46989 * 172.83878 * 4 2 1 6 6 H 1.08998 * 109.47315 * 54.05103 * 5 4 2 7 7 C 1.52998 * 109.47055 * 174.05229 * 5 4 2 8 8 C 1.50698 * 109.47288 * 294.05176 * 5 4 2 9 9 O 1.20833 * 119.99753 * 358.73247 * 8 5 4 10 10 O 1.34228 * 120.00288 * 178.73736 * 8 5 4 11 11 C 1.45204 * 117.00112 * 174.83703 * 10 8 5 12 12 C 1.52996 * 109.47033 * 185.00098 * 11 10 8 13 13 C 1.50706 * 115.54980 * 305.51793 * 12 11 10 14 14 H 1.07996 * 119.99802 * 144.21411 * 13 12 11 15 15 C 1.37880 * 119.99968 * 324.21071 * 13 12 11 16 16 N 1.31521 * 119.99832 * 3.30953 * 15 13 12 17 17 Si 1.86800 * 119.99959 * 183.30997 * 15 13 12 18 18 H 1.48497 * 109.47235 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46801 * 120.00072 * 17 15 13 20 20 H 1.48499 * 109.47067 * 239.99779 * 17 15 13 21 21 C 1.52992 * 117.49835 * 159.84893 * 12 11 10 22 22 C 1.53001 * 117.49889 * 91.18609 * 12 11 10 23 23 H 1.09004 * 109.47047 * 300.00609 * 1 2 3 24 24 H 1.09002 * 109.47132 * 59.99865 * 1 2 3 25 25 H 1.08991 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46916 * 240.00162 * 2 1 3 27 27 H 1.09000 * 109.47817 * 65.63319 * 3 2 1 28 28 H 1.08998 * 109.47312 * 185.63748 * 3 2 1 29 29 H 1.09006 * 109.47409 * 305.63641 * 3 2 1 30 30 H 1.08998 * 109.46853 * 52.84109 * 4 2 1 31 31 H 1.09001 * 109.47529 * 292.84017 * 4 2 1 32 32 H 1.08996 * 109.47368 * 55.14728 * 7 5 4 33 33 H 1.08998 * 109.47164 * 295.14422 * 7 5 4 34 34 H 1.09001 * 109.47242 * 175.14642 * 7 5 4 35 35 H 1.09001 * 109.46952 * 305.00321 * 11 10 8 36 36 H 1.09003 * 109.46949 * 64.99969 * 11 10 8 37 37 H 0.96994 * 119.99658 * 185.00828 * 16 15 13 38 38 H 1.09000 * 117.50080 * 359.97438 * 21 12 11 39 39 H 1.09005 * 117.50194 * 145.02298 * 21 12 11 40 40 H 1.08997 * 117.49954 * 214.98008 * 22 12 11 41 41 H 1.08996 * 117.49958 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5594 -0.8787 1.1626 6 1 4.0165 0.0956 0.9902 7 6 4.0869 -1.4647 2.4738 8 6 3.9044 -1.8039 0.0242 9 8 3.0243 -2.3057 -0.6344 10 8 5.1892 -2.0707 -0.2582 11 6 5.4458 -3.0581 -1.2914 12 6 6.9506 -3.3183 -1.3856 13 6 7.8093 -2.0980 -1.5964 14 1 8.7821 -2.0354 -1.1314 15 6 7.3532 -1.0614 -2.3829 16 7 6.1431 -1.1086 -2.8960 17 14 8.4538 0.4098 -2.7196 18 1 9.7568 0.2207 -2.0330 19 1 8.6791 0.5349 -4.1821 20 1 7.8006 1.6431 -2.2122 21 6 7.4019 -4.6224 -2.0463 22 6 7.5269 -4.4486 -0.5305 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.7614 1.9265 0.9361 28 1 3.1253 1.4442 -0.1009 29 1 1.5966 1.9847 -0.8352 30 1 1.5758 -1.7051 1.3157 31 1 1.7850 -0.1386 2.1346 32 1 3.5669 -2.3979 2.6900 33 1 3.9140 -0.7563 3.2839 34 1 5.1558 -1.6574 2.3816 35 1 4.9314 -3.9863 -1.0428 36 1 5.0809 -2.6856 -2.2486 37 1 5.8483 -0.4158 -3.5074 38 1 6.6268 -5.2951 -2.4134 39 1 8.3202 -4.5979 -2.6330 40 1 8.5273 -4.3098 -0.1207 41 1 6.8342 -5.0065 0.0995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765610367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:23 Heat of formation + Delta-G solvation = -101.346153 kcal Electronic energy + Delta-G solvation = -19954.064857 eV Core-core repulsion = 17026.618530 eV Total energy + Delta-G solvation = -2927.446327 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38940 -38.84553 -37.63847 -36.50007 -34.20121 -33.99432 -28.49797 -28.03659 -27.50701 -27.41230 -24.61781 -23.01975 -21.39121 -21.08887 -20.57726 -18.53273 -18.38577 -17.25555 -16.88079 -16.44302 -16.02797 -15.61258 -15.29932 -14.76240 -14.48724 -14.12451 -13.76552 -13.61355 -13.48423 -13.05282 -13.01303 -12.96743 -12.80066 -12.71092 -12.59541 -12.34896 -12.29270 -12.14846 -11.73755 -11.56870 -11.41999 -11.34182 -11.23589 -10.93956 -10.81883 -10.67509 -10.15964 -8.00679 -6.19894 1.40206 1.42972 1.48317 1.54068 2.10175 2.41923 3.04258 3.54795 3.68758 3.86843 3.94359 4.13241 4.22787 4.31207 4.34986 4.40999 4.45432 4.60702 4.76415 4.78188 4.81207 4.86184 4.88995 4.91165 4.94934 5.00895 5.03180 5.07212 5.13848 5.19945 5.29544 5.38066 5.44466 5.49112 5.50861 5.56322 5.85013 6.00389 6.32350 6.78935 7.11873 7.44177 8.92885 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.007182 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.963858 B = 3897.945852 C = 4616.661881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.145 4.145 4 C -0.088 4.088 5 C -0.084 4.084 6 H 0.106 0.894 7 C -0.137 4.137 8 C 0.448 3.552 9 O -0.551 6.551 10 O -0.336 6.336 11 C 0.131 3.869 12 C 0.003 3.997 13 C -0.493 4.493 14 H 0.056 0.944 15 C 0.028 3.972 16 N -0.906 5.906 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.188 4.188 22 C -0.187 4.187 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 2.935 9.583 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.202 4.202 4 C -0.125 4.125 5 C -0.103 4.103 6 H 0.124 0.876 7 C -0.194 4.194 8 C 0.293 3.707 9 O -0.444 6.444 10 O -0.251 6.251 11 C 0.057 3.943 12 C 0.003 3.997 13 C -0.530 4.530 14 H 0.075 0.925 15 C -0.172 4.172 16 N -0.544 5.544 17 Si 0.781 3.219 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.226 4.226 22 C -0.224 4.224 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.671 2.916 9.298 12.402 hybrid contribution 0.581 0.326 -1.004 1.205 sum -7.090 3.242 8.294 11.383 Atomic orbital electron populations 1.21718 0.93699 1.01482 1.02319 1.21251 0.97153 0.96349 0.98348 1.21875 1.00034 0.95570 1.02717 1.21558 0.90639 1.01356 0.98940 1.21279 0.99329 0.97800 0.91914 0.87612 1.21753 1.01272 1.01988 0.94413 1.24527 0.80792 0.80541 0.84793 1.90515 1.49790 1.52446 1.51619 1.86468 1.27627 1.56907 1.54084 1.22518 0.95369 0.85884 0.90524 1.19115 0.91003 0.89211 1.00366 1.20720 1.01536 1.00572 1.30169 0.92538 1.25656 0.95785 1.00139 0.95609 1.69990 1.17651 1.35326 1.31481 0.85545 0.79215 0.79333 0.77795 1.18980 1.20658 1.20834 1.22996 1.02449 1.02076 0.95062 1.22955 1.01940 1.04732 0.92742 0.90695 0.92938 0.93433 0.93952 0.90203 0.94442 0.92851 0.92101 0.87449 0.92053 0.87993 0.92538 0.96162 0.89849 0.93314 0.90194 0.89666 0.89545 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.19 71.98 0.66 -2.47 16 2 C -0.11 -3.23 2.70 -10.80 -0.03 -3.26 16 3 C -0.14 -3.68 8.86 71.98 0.64 -3.04 16 4 C -0.09 -2.29 3.78 30.59 0.12 -2.17 16 5 C -0.08 -2.62 2.73 -11.54 -0.03 -2.66 16 6 H 0.11 3.27 6.52 -2.39 -0.02 3.25 16 7 C -0.14 -3.43 9.16 71.98 0.66 -2.77 16 8 C 0.45 19.43 6.87 71.24 0.49 19.92 16 9 O -0.55 -26.30 13.85 21.94 0.30 -26.00 16 10 O -0.34 -16.68 9.67 -51.40 -0.50 -17.18 16 11 C 0.13 6.75 4.38 71.98 0.32 7.07 16 12 C 0.00 0.17 2.19 -52.93 -0.12 0.06 16 13 C -0.49 -26.93 8.79 25.60 0.23 -26.70 16 14 H 0.06 3.06 7.82 -2.91 -0.02 3.03 16 15 C 0.03 1.51 5.36 84.65 0.45 1.96 16 16 N -0.91 -51.70 10.25 21.45 0.22 -51.48 16 17 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.19 -8.29 9.96 30.62 0.30 -7.98 16 22 C -0.19 -7.91 9.93 30.62 0.30 -7.61 16 23 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 1.62 6.00 -2.39 -0.01 1.61 16 27 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 28 H 0.04 1.08 6.78 -2.39 -0.02 1.06 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 1.70 7.90 -2.39 -0.02 1.68 16 31 H 0.11 1.99 8.13 -2.39 -0.02 1.97 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.61 8.03 -2.39 -0.02 1.59 16 35 H 0.02 1.00 8.04 -2.39 -0.02 0.98 16 36 H 0.08 4.86 5.91 -2.39 -0.01 4.85 16 37 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.08 3.69 8.14 -2.38 -0.02 3.67 16 40 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -63.87 331.52 7.02 -56.85 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.98 Total: 22.12 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.99 Total: -29.65 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.22 Total: -51.48 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.19 Total: -43.17 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -63.87 7.02 -56.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765610367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.499 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds