Wall clock time and date at job start Mon Mar 30 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46934 * 2 1 4 4 O 1.45198 * 109.47153 * 240.00333 * 2 1 3 5 5 C 1.34232 * 117.00381 * 90.00066 * 4 2 1 6 6 O 1.20830 * 119.99602 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00195 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.46936 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46691 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46691 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46936 * 180.02562 * 10 9 8 12 12 H 1.07992 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99966 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00092 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00276 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47539 * 89.99317 * 15 13 11 17 17 H 1.48498 * 109.47274 * 210.00239 * 15 13 11 18 18 H 1.48511 * 109.46585 * 329.99506 * 15 13 11 19 19 C 1.52997 * 109.46977 * 120.00300 * 2 1 3 20 20 C 1.53784 * 113.61270 * 277.49622 * 19 2 1 21 21 C 1.53779 * 87.08045 * 220.02125 * 20 19 2 22 22 C 1.53779 * 87.08402 * 25.43458 * 21 20 19 23 23 H 1.08997 * 109.47547 * 299.99687 * 1 2 3 24 24 H 1.09007 * 109.47411 * 59.99879 * 1 2 3 25 25 H 1.09007 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47248 * 299.99872 * 7 5 4 27 27 H 1.09004 * 109.46836 * 60.00109 * 7 5 4 28 28 H 1.09002 * 109.47054 * 300.00000 * 8 7 5 29 29 H 1.08998 * 109.47186 * 60.00073 * 8 7 5 30 30 H 1.08992 * 109.47509 * 300.00113 * 9 8 7 31 31 H 1.09000 * 109.46989 * 60.00966 * 9 8 7 32 32 H 1.09005 * 109.47531 * 300.00268 * 10 9 8 33 33 H 1.08998 * 109.47186 * 60.00242 * 10 9 8 34 34 H 0.97000 * 120.00323 * 180.02562 * 14 13 11 35 35 H 1.08994 * 112.91116 * 48.74992 * 19 2 1 36 36 H 1.09002 * 113.61478 * 334.57090 * 20 19 2 37 37 H 1.09004 * 113.61162 * 105.47268 * 20 19 2 38 38 H 1.09006 * 113.61307 * 270.88660 * 21 20 19 39 39 H 1.08999 * 113.69146 * 139.99146 * 21 20 19 40 40 H 1.08997 * 113.61646 * 220.02209 * 22 21 20 41 41 H 1.09000 * 113.61527 * 89.11480 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2172 0.0641 -2.2812 6 8 1.9974 1.2518 -2.2506 7 6 2.7183 -0.5771 -3.5496 8 6 2.8624 0.4890 -4.6375 9 6 3.3718 -0.1619 -5.9250 10 6 3.5153 0.9041 -7.0131 11 6 4.0164 0.2629 -8.2815 12 1 4.2124 -0.7987 -8.3089 13 6 4.2246 1.0317 -9.4069 14 7 3.9853 2.3245 -9.3737 15 14 4.8450 0.2369 -10.9794 16 1 3.6892 -0.2068 -11.7993 17 1 5.6485 1.2212 -11.7480 18 1 5.6909 -0.9359 -10.6408 19 6 2.0399 -0.7213 1.2492 20 6 2.0719 0.1675 2.5038 21 6 3.4106 -0.5053 2.8502 22 6 3.5738 -0.7768 1.3454 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.6871 -1.0407 -3.3641 27 1 2.0087 -1.3368 -3.8775 28 1 1.8933 0.9523 -4.8228 29 1 3.5717 1.2490 -4.3097 30 1 4.3408 -0.6249 -5.7394 31 1 2.6627 -0.9220 -6.2530 32 1 2.5459 1.3668 -7.1987 33 1 4.2240 1.6646 -6.6854 34 1 4.1314 2.8653 -10.1656 35 1 1.5573 -1.6853 1.4093 36 1 2.1620 1.2311 2.2832 37 1 1.2757 -0.0524 3.2150 38 1 3.3026 -1.4104 3.4480 39 1 4.1548 0.1818 3.2531 40 1 3.9900 -1.7590 1.1215 41 1 4.0744 0.0287 0.8082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805891397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:13 Heat of formation + Delta-G solvation = -106.099867 kcal Electronic energy + Delta-G solvation = -18380.447428 eV Core-core repulsion = 15452.794964 eV Total energy + Delta-G solvation = -2927.652464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65867 -39.02599 -36.47635 -34.94093 -32.71412 -31.93130 -29.79824 -26.42536 -25.78124 -25.72257 -23.16920 -21.67612 -20.40415 -20.01378 -19.72960 -17.54237 -16.63370 -16.23290 -16.14144 -15.68556 -14.89666 -14.65044 -14.41801 -13.62870 -13.45926 -12.94251 -12.76921 -12.63415 -12.46907 -12.26620 -12.18014 -11.74554 -11.64813 -11.52073 -11.00665 -10.98963 -10.84595 -10.69705 -10.58323 -10.53625 -10.44731 -10.34578 -10.10749 -9.63662 -9.27233 -9.01028 -8.30993 -5.95794 -3.98353 2.35755 2.68192 3.34240 3.40271 3.43562 4.22542 4.28847 4.34505 4.48945 4.53729 4.81171 4.87349 4.89118 5.07313 5.25463 5.30931 5.37681 5.39743 5.40070 5.42806 5.52334 5.59220 5.62387 5.70405 5.80019 5.85331 5.92542 6.07945 6.15006 6.22915 6.47045 6.55579 6.78535 6.96769 7.17573 7.73076 7.88106 7.90275 8.05219 8.46975 9.09304 9.65445 11.15586 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.050755 B = 0.002903 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.537644 B = 9641.295636 C = 9808.856462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.458 3.542 6 O -0.507 6.507 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.108 4.108 20 C -0.131 4.131 21 C -0.143 4.143 22 C -0.133 4.133 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 -7.182 24.107 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.038 3.962 3 H 0.102 0.898 4 O -0.272 6.272 5 C 0.302 3.698 6 O -0.394 6.394 7 C -0.150 4.150 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.127 4.127 20 C -0.169 4.169 21 C -0.180 4.180 22 C -0.170 4.170 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.553 -6.655 24.043 25.359 hybrid contribution 0.218 -0.220 -0.897 0.949 sum -4.335 -6.874 23.145 24.531 Atomic orbital electron populations 1.22177 0.94486 1.02893 1.03009 1.22724 0.94352 0.96937 0.82223 0.89795 1.86579 1.77153 1.42907 1.20566 1.24200 0.74045 0.86167 0.85399 1.90652 1.47826 1.16890 1.84080 1.21600 1.03265 1.00884 0.89230 1.21569 1.02624 0.96545 0.93830 1.21648 0.99382 0.99776 0.93947 1.19098 0.97176 0.93499 0.91944 1.21278 1.43966 0.94542 0.96096 0.92691 1.25042 0.95744 0.94839 0.98954 1.69973 1.49228 1.05019 1.29295 0.86602 0.78853 0.79096 0.83486 1.20696 1.21254 1.19893 1.22704 0.97281 0.99952 0.92747 1.22938 0.98144 0.99375 0.96423 1.22827 0.97522 1.00886 0.96806 1.22853 0.95402 1.02607 0.96151 0.90876 0.91876 0.91637 0.87981 0.87985 0.91596 0.91599 0.93214 0.93228 0.96566 0.96550 0.93030 0.88315 0.89820 0.91055 0.90063 0.91255 0.91008 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.54 37.16 0.35 -1.25 16 2 C 0.09 1.00 2.33 -26.73 -0.06 0.93 16 3 H 0.08 1.02 6.96 -51.93 -0.36 0.65 16 4 O -0.35 -4.54 9.68 -39.26 -0.38 -4.92 16 5 C 0.46 6.75 7.93 36.01 0.29 7.04 16 6 O -0.51 -8.95 15.20 -18.75 -0.29 -9.24 16 7 C -0.11 -1.55 5.81 -27.88 -0.16 -1.71 16 8 C -0.11 -1.91 4.50 -26.73 -0.12 -2.03 16 9 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 10 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.11 -0.91 3.36 -89.80 -0.30 -1.21 16 20 C -0.13 -0.91 7.63 -25.92 -0.20 -1.11 16 21 C -0.14 -0.97 8.08 -25.92 -0.21 -1.18 16 22 C -0.13 -1.12 7.45 -25.92 -0.19 -1.31 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.60 7.96 -51.93 -0.41 0.18 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -32.04 339.61 -8.62 -40.67 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -7.50 Total: -4.13 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.29 Total: -17.61 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.74 Total: -26.79 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.67 Total: -14.16 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.04 -8.62 -40.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805891397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.434 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds