Wall clock time and date at job start Mon Mar 30 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 H 1.08989 * 109.47033 * 305.00082 * 3 2 1 5 5 C 1.50695 * 109.46849 * 184.99632 * 3 2 1 6 6 H 1.08002 * 120.00113 * 240.00189 * 5 3 2 7 7 C 1.37876 * 120.00266 * 60.00460 * 5 3 2 8 8 N 1.31518 * 119.99747 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00433 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47103 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47195 * 119.99713 * 9 7 5 12 12 H 1.48500 * 109.47278 * 240.00107 * 9 7 5 13 13 O 1.45206 * 109.46775 * 64.99966 * 3 2 1 14 14 C 1.34223 * 116.99812 * 269.99829 * 13 3 2 15 15 O 1.20826 * 120.00294 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00190 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47780 * 179.97438 * 16 14 13 18 18 C 1.53003 * 110.05489 * 301.42138 * 17 16 14 19 19 C 1.53869 * 110.03587 * 179.97438 * 17 16 14 20 20 C 1.54270 * 106.63967 * 240.69205 * 19 17 16 21 21 C 1.54961 * 104.16191 * 336.44607 * 20 19 17 22 22 C 1.54268 * 110.02861 * 62.83026 * 17 16 14 23 23 H 1.08999 * 109.46884 * 60.00024 * 1 2 3 24 24 H 1.09000 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47565 * 300.00028 * 1 2 3 26 26 H 1.09002 * 109.46992 * 239.99772 * 2 1 3 27 27 H 1.09002 * 109.46769 * 120.00477 * 2 1 3 28 28 H 0.96996 * 120.00083 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47173 * 60.00013 * 16 14 13 30 30 H 1.08998 * 109.46928 * 300.00408 * 16 14 13 31 31 H 1.08997 * 109.46645 * 298.57674 * 18 17 16 32 32 H 1.09002 * 109.47322 * 58.57852 * 18 17 16 33 33 H 1.09003 * 109.47022 * 178.58091 * 18 17 16 34 34 H 1.09002 * 110.03268 * 0.02562 * 19 17 16 35 35 H 1.08995 * 110.03391 * 121.38598 * 19 17 16 36 36 H 1.08997 * 110.48585 * 95.09409 * 20 19 17 37 37 H 1.09002 * 110.48442 * 217.73292 * 20 19 17 38 38 H 1.09001 * 110.71970 * 279.57802 * 21 20 19 39 39 H 1.08991 * 110.92569 * 156.29385 * 21 20 19 40 40 H 1.08997 * 110.48788 * 261.57517 * 22 17 16 41 41 H 1.09000 * 110.48806 * 24.08817 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3366 -2.1728 9 14 6.0049 0.8811 -1.3816 10 1 6.5987 1.5472 -0.1945 11 1 6.4970 -0.5176 -1.4628 12 1 6.3991 1.6167 -2.6100 13 8 1.6558 2.0916 1.2408 14 6 0.4727 2.7253 1.2560 15 8 -0.2193 2.7369 0.2656 16 6 0.0073 3.4224 2.5084 17 6 -1.3609 4.0601 2.2589 18 6 -1.2729 5.0539 1.0989 19 6 -1.8489 4.7755 3.5308 20 6 -3.1707 4.0941 3.9413 21 6 -3.6986 3.4674 2.6260 22 6 -2.4028 2.9678 1.9409 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8294 -0.0618 -2.9494 29 1 0.7243 4.1969 2.7810 30 1 -0.0713 2.6984 3.3193 31 1 -0.5719 5.8487 1.3539 32 1 -0.9268 4.5376 0.2035 33 1 -2.2573 5.4835 0.9131 34 1 -1.1108 4.6688 4.3257 35 1 -2.0222 5.8311 3.3222 36 1 -2.9855 3.3194 4.6853 37 1 -3.8769 4.8309 4.3241 38 1 -4.1949 4.2194 2.0126 39 1 -4.3711 2.6352 2.8338 40 1 -2.5496 2.8824 0.8642 41 1 -2.0921 2.0106 2.3597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809003611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:03 Heat of formation + Delta-G solvation = -120.486111 kcal Electronic energy + Delta-G solvation = -20030.814005 eV Core-core repulsion = 17102.537707 eV Total energy + Delta-G solvation = -2928.276298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09641 -38.33123 -35.64636 -33.46372 -32.09834 -31.28521 -28.65543 -28.22858 -26.97778 -24.75211 -23.15979 -20.94994 -20.67539 -19.43809 -18.47761 -16.89368 -16.52166 -15.68099 -15.52247 -14.87912 -14.77734 -14.24293 -13.68762 -13.42663 -13.04956 -12.84986 -12.73084 -12.05187 -11.93589 -11.43928 -11.37223 -11.24079 -11.13850 -11.07692 -10.98814 -10.93140 -10.74863 -10.56269 -10.45718 -10.37303 -10.29260 -10.21899 -9.72973 -9.41462 -9.15673 -8.74319 -8.42863 -6.16929 -4.23609 3.12716 3.23967 3.30996 3.35870 3.78401 4.35012 4.63464 4.65381 4.80394 5.15053 5.25418 5.35272 5.45491 5.49762 5.61568 5.69820 5.81779 5.84919 5.90205 5.92389 5.95087 6.03387 6.19348 6.25734 6.28854 6.32134 6.36745 6.44804 6.52646 6.55153 6.72323 6.91932 7.01638 7.20392 7.34776 7.65175 7.77652 8.01908 8.20532 8.70936 8.96566 9.41946 10.89819 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.039652 B = 0.005102 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.976986 B = 5486.284494 C = 5789.375152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.360 6.360 14 C 0.451 3.549 15 O -0.510 6.510 16 C -0.108 4.108 17 C -0.049 4.049 18 C -0.153 4.153 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.109 4.109 23 H 0.053 0.947 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 6.082 9.749 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.276 6.276 14 C 0.294 3.706 15 O -0.401 6.401 16 C -0.146 4.146 17 C -0.049 4.049 18 C -0.210 4.210 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.125 0.875 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.523 5.964 9.251 15.228 hybrid contribution 0.961 -0.122 -0.205 0.990 sum -9.562 5.841 9.046 14.401 Atomic orbital electron populations 1.21848 0.98329 0.98848 1.00802 1.22007 0.92675 0.99459 1.03201 1.20618 0.94874 0.88730 0.78876 0.93568 1.21103 0.89883 1.38712 1.06127 0.91397 1.24880 0.99149 0.94817 0.95103 1.69902 1.35229 1.37982 1.09500 0.86259 0.84063 0.77865 0.78190 1.19508 1.20733 1.20780 1.86476 1.34628 1.62559 1.43966 1.23272 0.80585 0.76941 0.89752 1.90511 1.55269 1.58106 1.36179 1.21558 0.97496 1.00353 0.95150 1.20950 0.92995 0.95608 0.95348 1.22183 1.00942 0.98121 0.99736 1.22285 0.96986 0.99435 0.96712 1.22356 0.96660 0.99493 0.97606 1.22522 0.97604 0.99882 0.96368 1.22454 0.93396 0.97143 1.01690 0.92838 0.95032 0.94811 0.87474 0.94151 0.92505 0.88668 0.88691 0.93583 0.89322 0.93212 0.91700 0.91603 0.91823 0.92106 0.91789 0.91989 0.90305 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.57 37.16 0.32 -2.76 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.88 2.25 -27.89 -0.06 5.81 16 4 H 0.05 1.35 7.16 -51.94 -0.37 0.98 16 5 C -0.52 -14.62 8.90 -34.44 -0.31 -14.93 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 O -0.36 -8.51 9.81 -39.24 -0.38 -8.90 16 14 C 0.45 9.04 5.88 36.01 0.21 9.25 16 15 O -0.51 -10.98 9.31 -18.75 -0.17 -11.15 16 16 C -0.11 -1.59 4.52 -27.88 -0.13 -1.72 16 17 C -0.05 -0.64 0.63 -153.39 -0.10 -0.74 16 18 C -0.15 -2.14 7.84 37.16 0.29 -1.85 16 19 C -0.12 -1.23 6.11 -25.61 -0.16 -1.39 16 20 C -0.12 -1.20 6.84 -25.03 -0.17 -1.38 16 21 C -0.13 -1.37 6.91 -24.72 -0.17 -1.54 16 22 C -0.11 -1.49 4.73 -25.09 -0.12 -1.60 16 23 H 0.05 1.22 7.80 -51.93 -0.40 0.81 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 26 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.52 5.42 -51.93 -0.28 1.24 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 35 H 0.07 0.65 7.67 -51.93 -0.40 0.26 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.23 7.16 -51.93 -0.37 0.85 16 41 H 0.06 0.86 7.84 -51.93 -0.41 0.46 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -28.93 315.44 -7.86 -36.79 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.03 Total: 1.67 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.63 Total: -14.73 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.63 Total: -24.51 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.56 Total: -20.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.93 -7.86 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809003611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.696 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds