Wall clock time and date at job start Mon Mar 30 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46949 * 2 1 4 4 H 1.08993 * 109.47450 * 54.99335 * 3 2 1 5 5 C 1.50704 * 109.47093 * 174.99979 * 3 2 1 6 6 H 1.07993 * 120.00179 * 119.99534 * 5 3 2 7 7 C 1.37873 * 119.99558 * 299.99448 * 5 3 2 8 8 N 1.31519 * 120.00542 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99852 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47397 * 59.99802 * 9 7 5 11 11 H 1.48497 * 109.47271 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46932 * 299.99976 * 9 7 5 13 13 O 1.45208 * 109.46728 * 294.99440 * 3 2 1 14 14 C 1.34232 * 116.99695 * 90.00324 * 13 3 2 15 15 O 1.20819 * 120.00261 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99689 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47202 * 180.02562 * 16 14 13 18 18 C 1.52998 * 110.05489 * 58.58041 * 17 16 14 19 19 C 1.53869 * 110.03485 * 180.02562 * 17 16 14 20 20 C 1.54270 * 106.63967 * 119.25869 * 19 17 16 21 21 C 1.55005 * 104.13720 * 23.62421 * 20 19 17 22 22 C 1.54268 * 110.02859 * 297.17152 * 17 16 14 23 23 H 1.08995 * 109.47270 * 300.00667 * 1 2 3 24 24 H 1.09006 * 109.46752 * 60.00858 * 1 2 3 25 25 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47270 * 239.99333 * 2 1 3 27 27 H 1.08998 * 109.46490 * 119.99328 * 2 1 3 28 28 H 0.96996 * 120.00045 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47172 * 60.00237 * 16 14 13 30 30 H 1.08997 * 109.47621 * 299.99966 * 16 14 13 31 31 H 1.08998 * 109.47417 * 181.41792 * 18 17 16 32 32 H 1.08995 * 109.47912 * 301.42187 * 18 17 16 33 33 H 1.09003 * 109.46563 * 61.42261 * 18 17 16 34 34 H 1.09002 * 110.03268 * 238.56956 * 19 17 16 35 35 H 1.08995 * 110.03391 * 359.95262 * 19 17 16 36 36 H 1.08998 * 110.48170 * 142.31277 * 20 19 17 37 37 H 1.08998 * 110.48753 * 264.95665 * 20 19 17 38 38 H 1.09001 * 110.74691 * 203.73447 * 21 20 19 39 39 H 1.09005 * 110.92280 * 80.43999 * 21 20 19 40 40 H 1.09003 * 110.49208 * 335.77788 * 22 17 16 41 41 H 1.08998 * 110.48781 * 98.29484 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3368 2.1730 9 14 6.0049 0.8814 1.3820 10 1 6.4994 2.2816 1.3822 11 1 6.3977 0.2170 2.6506 12 1 6.5975 0.1473 0.2351 13 8 1.6559 2.0916 -1.2409 14 6 0.4727 2.7253 -1.2562 15 8 -0.2189 2.7377 -0.2656 16 6 0.0075 3.4223 -2.5087 17 6 -1.3608 4.0600 -2.2593 18 6 -1.2729 5.0538 -1.0994 19 6 -1.8487 4.7753 -3.5312 20 6 -3.1698 4.0930 -3.9425 21 6 -3.6984 3.4673 -2.6265 22 6 -2.4027 2.9677 -1.9413 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.8292 -0.0616 2.9496 29 1 -0.0711 2.6982 -3.3196 30 1 0.7245 4.1967 -2.7813 31 1 -2.2572 5.4835 -0.9136 32 1 -0.9268 4.5377 -0.2039 33 1 -0.5718 5.8486 -1.3544 34 1 -2.0228 5.8309 -3.3225 35 1 -1.1104 4.6689 -4.3259 36 1 -3.8760 4.8293 -4.3262 37 1 -2.9836 3.3180 -4.6859 38 1 -4.3696 2.6347 -2.8373 39 1 -4.1966 4.2169 -2.0116 40 1 -2.0931 2.0109 -2.3620 41 1 -2.5478 2.8807 -0.8645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809003612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:06 Heat of formation + Delta-G solvation = -120.379803 kcal Electronic energy + Delta-G solvation = -20030.581291 eV Core-core repulsion = 17102.309603 eV Total energy + Delta-G solvation = -2928.271688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09566 -38.32915 -35.64551 -33.46109 -32.09615 -31.28338 -28.65500 -28.22800 -26.97485 -24.74989 -23.15611 -20.94851 -20.67634 -19.43640 -18.47660 -16.89197 -16.51815 -15.67861 -15.52020 -14.87689 -14.77527 -14.25037 -13.68856 -13.42537 -13.04657 -12.84664 -12.72804 -12.05170 -11.93458 -11.43228 -11.37000 -11.23624 -11.13333 -11.08883 -10.97438 -10.92738 -10.74427 -10.57584 -10.45916 -10.37517 -10.29270 -10.22716 -9.73112 -9.41498 -9.15620 -8.75173 -8.42063 -6.16316 -4.23282 3.12782 3.27043 3.30690 3.33126 3.78377 4.35203 4.63439 4.65243 4.80655 5.15392 5.25485 5.35238 5.45637 5.49589 5.61699 5.69832 5.81813 5.84919 5.90100 5.92395 5.95132 6.03367 6.19402 6.25763 6.28943 6.32266 6.36744 6.44854 6.52694 6.55194 6.72423 6.92066 7.01698 7.20528 7.34909 7.65073 7.77797 8.02116 8.20754 8.70844 8.96396 9.42143 10.90284 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.005102 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.040509 B = 5486.233508 C = 5789.239772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.360 6.360 14 C 0.451 3.549 15 O -0.510 6.510 16 C -0.108 4.108 17 C -0.049 4.049 18 C -0.153 4.153 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.109 4.109 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.107 0.893 28 H 0.266 0.734 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 6.068 -9.721 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.276 6.276 14 C 0.295 3.705 15 O -0.401 6.401 16 C -0.146 4.146 17 C -0.049 4.049 18 C -0.210 4.210 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.522 5.944 -9.214 15.197 hybrid contribution 0.970 -0.110 0.181 0.993 sum -9.552 5.834 -9.033 14.383 Atomic orbital electron populations 1.21850 0.98334 0.98846 1.00796 1.22007 0.92668 0.99466 1.03201 1.20610 0.94835 0.88722 0.78867 0.93574 1.21024 0.89880 1.38919 1.06154 0.91504 1.24874 0.99133 0.94796 0.95089 1.69882 1.35408 1.37841 1.09487 0.86364 0.84044 0.78458 0.77445 1.20023 1.21048 1.19972 1.86478 1.34623 1.62570 1.43973 1.23270 0.80583 0.76937 0.89755 1.90508 1.55283 1.58098 1.36169 1.21559 0.97498 1.00351 0.95152 1.20950 0.92993 0.95607 0.95347 1.22181 1.00942 0.98121 0.99739 1.22286 0.96995 0.99434 0.96708 1.22364 0.96662 0.99499 0.97592 1.22531 0.97600 0.99899 0.96345 1.22456 0.93405 0.97139 1.01689 0.92830 0.94823 0.95033 0.94152 0.87474 0.92391 0.88694 0.88667 0.93212 0.89319 0.93585 0.91599 0.91704 0.92105 0.91813 0.92016 0.91762 0.92123 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.57 37.16 0.32 -2.76 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.90 2.25 -27.88 -0.06 5.83 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.66 8.90 -34.44 -0.31 -14.97 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.14 11.29 55.43 0.63 -24.52 16 9 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.36 -8.52 9.81 -39.26 -0.39 -8.90 16 14 C 0.45 9.05 5.88 36.01 0.21 9.26 16 15 O -0.51 -10.98 9.31 -18.74 -0.17 -11.15 16 16 C -0.11 -1.59 4.52 -27.88 -0.13 -1.72 16 17 C -0.05 -0.64 0.63 -153.39 -0.10 -0.74 16 18 C -0.15 -2.15 7.83 37.16 0.29 -1.85 16 19 C -0.12 -1.23 6.11 -25.61 -0.16 -1.39 16 20 C -0.12 -1.20 6.84 -25.01 -0.17 -1.38 16 21 C -0.13 -1.37 6.91 -24.69 -0.17 -1.54 16 22 C -0.11 -1.49 4.73 -25.09 -0.12 -1.61 16 23 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 24 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.53 5.42 -51.93 -0.28 1.24 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.65 7.67 -51.93 -0.40 0.26 16 35 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 41 H 0.08 1.23 7.15 -51.93 -0.37 0.86 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -28.88 315.44 -7.86 -36.74 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.03 Total: 1.73 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -0.63 Total: -14.74 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.63 Total: -24.52 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.56 Total: -20.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.88 -7.86 -36.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809003612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.641 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds