Wall clock time and date at job start Mon Mar 30 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46949 * 2 1 4 4 H 1.08993 * 109.47450 * 54.99335 * 3 2 1 5 5 C 1.50704 * 109.47093 * 174.99979 * 3 2 1 6 6 H 1.07993 * 120.00179 * 119.99534 * 5 3 2 7 7 C 1.37873 * 119.99558 * 299.99448 * 5 3 2 8 8 N 1.31519 * 120.00542 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99852 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47397 * 59.99802 * 9 7 5 11 11 H 1.48497 * 109.47271 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46932 * 299.99976 * 9 7 5 13 13 O 1.45208 * 109.46728 * 294.99440 * 3 2 1 14 14 C 1.34232 * 116.99695 * 90.00324 * 13 3 2 15 15 O 1.20819 * 120.00261 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99689 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47202 * 180.02562 * 16 14 13 18 18 C 1.52998 * 110.05489 * 58.58041 * 17 16 14 19 19 C 1.53869 * 110.03485 * 180.02562 * 17 16 14 20 20 C 1.54270 * 106.63967 * 119.25869 * 19 17 16 21 21 C 1.55005 * 104.13720 * 23.62421 * 20 19 17 22 22 C 1.54268 * 110.02859 * 297.17152 * 17 16 14 23 23 H 1.08995 * 109.47270 * 300.00667 * 1 2 3 24 24 H 1.09006 * 109.46752 * 60.00858 * 1 2 3 25 25 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47270 * 239.99333 * 2 1 3 27 27 H 1.08998 * 109.46490 * 119.99328 * 2 1 3 28 28 H 0.96996 * 120.00045 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.47172 * 60.00237 * 16 14 13 30 30 H 1.08997 * 109.47621 * 299.99966 * 16 14 13 31 31 H 1.08998 * 109.47417 * 181.41792 * 18 17 16 32 32 H 1.08995 * 109.47912 * 301.42187 * 18 17 16 33 33 H 1.09003 * 109.46563 * 61.42261 * 18 17 16 34 34 H 1.09002 * 110.03268 * 238.56956 * 19 17 16 35 35 H 1.08995 * 110.03391 * 359.95262 * 19 17 16 36 36 H 1.08998 * 110.48170 * 142.31277 * 20 19 17 37 37 H 1.08998 * 110.48753 * 264.95665 * 20 19 17 38 38 H 1.09001 * 110.74691 * 203.73447 * 21 20 19 39 39 H 1.09005 * 110.92280 * 80.43999 * 21 20 19 40 40 H 1.09003 * 110.49208 * 335.77788 * 22 17 16 41 41 H 1.08998 * 110.48781 * 98.29484 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3368 2.1730 9 14 6.0049 0.8814 1.3820 10 1 6.4994 2.2816 1.3822 11 1 6.3977 0.2170 2.6506 12 1 6.5975 0.1473 0.2351 13 8 1.6559 2.0916 -1.2409 14 6 0.4727 2.7253 -1.2562 15 8 -0.2189 2.7377 -0.2656 16 6 0.0075 3.4223 -2.5087 17 6 -1.3608 4.0600 -2.2593 18 6 -1.2729 5.0538 -1.0994 19 6 -1.8487 4.7753 -3.5312 20 6 -3.1698 4.0930 -3.9425 21 6 -3.6984 3.4673 -2.6265 22 6 -2.4027 2.9677 -1.9413 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.8292 -0.0616 2.9496 29 1 -0.0711 2.6982 -3.3196 30 1 0.7245 4.1967 -2.7813 31 1 -2.2572 5.4835 -0.9136 32 1 -0.9268 4.5377 -0.2039 33 1 -0.5718 5.8486 -1.3544 34 1 -2.0228 5.8309 -3.3225 35 1 -1.1104 4.6689 -4.3259 36 1 -3.8760 4.8293 -4.3262 37 1 -2.9836 3.3180 -4.6859 38 1 -4.3696 2.6347 -2.8373 39 1 -4.1966 4.2169 -2.0116 40 1 -2.0931 2.0109 -2.3620 41 1 -2.5478 2.8807 -0.8645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809003612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:05 Heat of formation + Delta-G solvation = -134.598620 kcal Electronic energy + Delta-G solvation = -20031.197865 eV Core-core repulsion = 17102.309603 eV Total energy + Delta-G solvation = -2928.888262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61143 -39.60324 -37.38138 -35.46439 -33.47628 -32.98560 -29.74992 -29.56081 -28.74935 -25.87631 -25.10151 -22.66784 -21.55320 -21.25667 -19.62022 -18.75849 -18.33356 -17.22986 -17.08084 -16.50798 -15.81573 -15.78358 -14.95427 -14.84236 -14.65600 -14.32443 -14.02394 -13.56968 -13.39892 -13.30287 -13.17634 -12.81908 -12.67356 -12.54463 -12.49476 -12.14376 -12.09546 -11.88694 -11.72893 -11.63660 -11.51522 -11.40426 -11.32916 -11.24930 -10.86988 -10.70708 -10.46657 -8.26741 -6.43638 1.40872 1.44361 1.51577 1.53525 2.14844 2.45911 3.02595 3.62060 3.68278 3.82347 4.13937 4.33955 4.37280 4.39703 4.41215 4.47381 4.57174 4.61805 4.65548 4.70794 4.81138 4.86100 4.88648 5.01191 5.07125 5.09972 5.18018 5.20397 5.23698 5.29312 5.34274 5.46005 5.46885 5.53131 5.55456 5.64171 5.69875 6.03097 6.25166 6.62556 7.12336 7.31102 8.79551 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.005102 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.040509 B = 5486.233508 C = 5789.239772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.063 0.937 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.265 1.265 13 O -0.372 6.372 14 C 0.441 3.559 15 O -0.528 6.528 16 C -0.100 4.100 17 C -0.049 4.049 18 C -0.150 4.150 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.113 4.113 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.270 0.730 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 6.732 -11.784 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.189 1.189 13 O -0.290 6.290 14 C 0.286 3.714 15 O -0.418 6.418 16 C -0.138 4.138 17 C -0.049 4.049 18 C -0.207 4.207 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.150 4.150 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.726 6.618 -11.289 16.919 hybrid contribution 0.953 -0.285 0.868 1.320 sum -9.772 6.333 -10.421 15.627 Atomic orbital electron populations 1.21683 0.96114 1.00350 1.00202 1.21848 0.94583 0.98245 1.02035 1.20262 0.94263 0.89190 0.78907 0.97675 1.21332 0.90841 1.39948 1.06821 0.91837 1.25784 1.04144 0.93884 0.94365 1.70010 1.37452 1.37931 1.09851 0.85296 0.77854 0.78760 0.77883 1.19414 1.20204 1.18920 1.86470 1.36803 1.63368 1.42322 1.24425 0.79213 0.76343 0.91465 1.90524 1.55392 1.58430 1.37488 1.21762 0.98649 1.00786 0.92563 1.21012 0.91910 0.95339 0.96602 1.22112 1.01755 0.98286 0.98560 1.22252 0.97719 0.99620 0.95213 1.22365 0.96425 0.99997 0.96807 1.22513 0.96232 1.00315 0.96888 1.22422 0.95436 0.97158 1.00024 0.94638 0.94129 0.92371 0.93889 0.89819 0.92100 0.86560 0.86772 0.91918 0.93196 0.92590 0.90539 0.90223 0.90230 0.91106 0.91244 0.91487 0.93026 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.57 71.98 0.62 -4.97 16 2 C -0.13 -6.60 5.49 30.60 0.17 -6.44 16 3 C 0.23 12.52 2.25 29.85 0.07 12.59 16 4 H 0.01 0.34 7.16 -2.39 -0.02 0.32 16 5 C -0.55 -31.79 8.90 25.60 0.23 -31.56 16 6 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.96 11.29 21.45 0.24 -52.71 16 9 Si 0.98 43.31 29.54 68.60 2.03 45.33 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 O -0.37 -18.02 9.81 -51.43 -0.50 -18.52 16 14 C 0.44 17.95 5.88 71.24 0.42 18.37 16 15 O -0.53 -23.71 9.31 21.98 0.20 -23.50 16 16 C -0.10 -2.82 4.52 29.85 0.13 -2.68 16 17 C -0.05 -1.20 0.63 -51.46 -0.03 -1.24 16 18 C -0.15 -4.13 7.83 71.98 0.56 -3.57 16 19 C -0.11 -1.94 6.11 31.32 0.19 -1.75 16 20 C -0.12 -1.88 6.84 31.71 0.22 -1.66 16 21 C -0.12 -2.39 6.91 31.92 0.22 -2.17 16 22 C -0.11 -2.99 4.73 31.66 0.15 -2.84 16 23 H 0.03 1.66 7.80 -2.39 -0.02 1.65 16 24 H 0.04 1.70 6.06 -2.38 -0.01 1.69 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 4.69 5.95 -2.39 -0.01 4.67 16 28 H 0.27 14.66 8.31 -92.71 -0.77 13.88 16 29 H 0.12 2.81 8.12 -2.39 -0.02 2.79 16 30 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.78 5.42 -2.39 -0.01 1.76 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.22 7.67 -2.39 -0.02 1.20 16 35 H 0.08 1.20 7.67 -2.39 -0.02 1.19 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.05 1.43 7.84 -2.39 -0.02 1.41 16 41 H 0.05 1.57 7.15 -2.39 -0.02 1.55 16 Total: -1.00 -64.58 315.44 6.34 -58.23 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.98 Total: 17.64 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 3.39 Total: -26.47 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.24 Total: -52.71 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.30 Total: -42.02 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.58 6.34 -58.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809003612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.364 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds