Wall clock time and date at job start Mon Mar 30 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47350 * 2 1 4 4 H 1.09013 * 109.46775 * 55.00402 * 3 2 1 5 5 C 1.52996 * 109.47214 * 295.00452 * 3 2 1 6 6 C 1.53002 * 109.47343 * 174.99630 * 3 2 1 7 7 H 1.08995 * 109.46760 * 64.91031 * 6 3 2 8 8 C 1.53001 * 109.47298 * 304.91057 * 6 3 2 9 9 C 1.50701 * 109.46990 * 184.91090 * 6 3 2 10 10 O 1.20824 * 120.00316 * 36.83037 * 9 6 3 11 11 O 1.34234 * 119.99674 * 216.83106 * 9 6 3 12 12 C 1.45202 * 116.99780 * 184.33021 * 11 9 6 13 13 C 1.50702 * 112.84883 * 58.83470 * 12 11 9 14 14 H 1.08002 * 119.99592 * 243.71658 * 13 12 11 15 15 C 1.37877 * 120.00247 * 63.70926 * 13 12 11 16 16 N 1.31511 * 119.99977 * 186.41829 * 15 13 12 17 17 Si 1.86798 * 119.99696 * 6.42471 * 15 13 12 18 18 H 1.48497 * 109.47478 * 92.04134 * 17 15 13 19 19 H 1.48510 * 109.47001 * 212.03969 * 17 15 13 20 20 H 1.48495 * 109.47443 * 332.03627 * 17 15 13 21 21 C 1.53780 * 113.61428 * 287.63373 * 12 11 9 22 22 C 1.53952 * 87.01938 * 220.04810 * 21 12 11 23 23 C 1.53781 * 113.61066 * 190.02777 * 12 11 9 24 24 H 1.09001 * 109.46961 * 60.00022 * 1 2 3 25 25 H 1.09004 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47354 * 299.99881 * 1 2 3 27 27 H 1.09005 * 109.47613 * 240.00276 * 2 1 3 28 28 H 1.08998 * 109.47424 * 120.00195 * 2 1 3 29 29 H 1.09001 * 109.46922 * 305.45061 * 5 3 2 30 30 H 1.08998 * 109.47316 * 65.45513 * 5 3 2 31 31 H 1.09004 * 109.46627 * 185.45610 * 5 3 2 32 32 H 1.09000 * 109.47224 * 59.99884 * 8 6 3 33 33 H 1.08999 * 109.47318 * 179.97438 * 8 6 3 34 34 H 1.09004 * 109.47209 * 299.99985 * 8 6 3 35 35 H 0.96998 * 119.99437 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.61735 * 334.56943 * 21 12 11 37 37 H 1.09004 * 113.60902 * 105.47282 * 21 12 11 38 38 H 1.09001 * 113.54120 * 270.81768 * 22 21 12 39 39 H 1.09001 * 113.74039 * 139.94539 * 22 21 12 40 40 H 1.09005 * 113.61308 * 254.52975 * 23 12 11 41 41 H 1.08996 * 113.62126 * 25.35235 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8420 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 4.0028 0.9821 -0.7588 8 6 3.9749 0.6541 1.3702 9 6 4.0571 2.8635 0.2471 10 8 3.4145 3.6747 0.8707 11 8 5.2097 3.2263 -0.3376 12 6 5.6715 4.5821 -0.0992 13 6 5.8832 4.8795 1.3630 14 1 5.2826 5.6312 1.8535 15 6 6.8435 4.1921 2.0744 16 7 6.9439 4.3593 3.3750 17 14 8.0022 3.0232 1.1908 18 1 9.2341 3.7520 0.7955 19 1 8.3596 1.9018 2.0964 20 1 7.3340 2.4864 -0.0218 21 6 4.8455 5.6521 -0.8323 22 6 6.1774 6.3693 -1.1184 23 6 6.8554 4.9950 -0.9895 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.9878 1.5343 -2.1516 30 1 0.5495 2.2121 -1.3516 31 1 2.0800 3.1208 -1.3499 32 1 3.6188 -0.3723 1.2825 33 1 5.0612 0.6550 1.4595 34 1 3.5368 1.1163 2.2548 35 1 7.6197 3.8759 3.8753 36 1 4.3478 5.2816 -1.7284 37 1 4.1783 6.2130 -0.1776 38 1 6.4682 7.0743 -0.3397 39 1 6.2402 6.7950 -2.1198 40 1 7.8086 5.0262 -0.4617 41 1 6.9092 4.4435 -1.9281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:37 Heat of formation + Delta-G solvation = -103.631971 kcal Electronic energy + Delta-G solvation = -20452.838724 eV Core-core repulsion = 17525.293277 eV Total energy + Delta-G solvation = -2927.545448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51674 -39.58052 -37.68153 -36.16461 -34.54255 -32.95545 -30.27793 -28.72869 -26.65691 -25.99165 -25.32525 -24.18284 -21.80657 -20.50500 -20.31529 -19.03602 -17.63385 -17.37499 -17.08147 -16.41784 -15.83133 -15.63638 -15.20350 -14.96057 -14.83473 -14.51192 -14.02438 -13.58348 -13.54040 -13.26803 -12.98127 -12.86446 -12.82595 -12.71431 -12.56234 -12.37916 -12.15386 -12.01632 -11.82019 -11.68588 -11.60211 -11.47098 -11.35193 -11.13639 -10.94661 -10.57096 -10.49642 -8.42313 -6.53051 1.27689 1.29284 1.52819 1.66640 2.19873 2.30231 2.96708 3.64403 3.75653 3.84558 3.91148 3.96048 4.13147 4.15042 4.30994 4.34132 4.46530 4.56579 4.64121 4.71937 4.74289 4.76047 4.80827 4.84639 4.93226 5.01609 5.06670 5.11746 5.13615 5.17363 5.20056 5.24176 5.32170 5.50260 5.54212 5.56306 5.62902 5.90395 6.36462 6.56148 7.15963 7.30944 8.73022 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.007931 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.947231 B = 3529.671795 C = 4113.388545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.055 0.945 5 C -0.145 4.145 6 C -0.081 4.081 7 H 0.116 0.884 8 C -0.142 4.142 9 C 0.455 3.545 10 O -0.534 6.534 11 O -0.372 6.372 12 C 0.179 3.821 13 C -0.506 4.506 14 H 0.025 0.975 15 C 0.028 3.972 16 N -0.932 5.932 17 Si 0.921 3.079 18 H -0.262 1.262 19 H -0.292 1.292 20 H -0.214 1.214 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.128 4.128 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.269 0.731 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 -9.974 -12.368 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.073 0.927 5 C -0.202 4.202 6 C -0.100 4.100 7 H 0.134 0.866 8 C -0.199 4.199 9 C 0.299 3.701 10 O -0.423 6.423 11 O -0.290 6.290 12 C 0.144 3.856 13 C -0.543 4.543 14 H 0.043 0.957 15 C -0.172 4.172 16 N -0.571 5.571 17 Si 0.744 3.256 18 H -0.187 1.187 19 H -0.219 1.219 20 H -0.136 1.136 21 C -0.180 4.180 22 C -0.147 4.147 23 C -0.165 4.165 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.835 -9.717 -12.056 16.926 hybrid contribution 0.584 0.305 0.918 1.130 sum -6.251 -9.413 -11.138 15.866 Atomic orbital electron populations 1.21801 0.94975 1.02312 1.01787 1.21645 0.96616 0.93520 1.03404 1.21091 0.90823 0.98656 0.98940 0.92651 1.21874 1.02101 0.99291 0.96979 1.21269 0.98083 0.88296 1.02339 0.86593 1.21828 1.01080 1.01581 0.95403 1.24042 0.78926 0.91794 0.75321 1.90564 1.57586 1.54929 1.39249 1.86526 1.38309 1.36884 1.67276 1.21663 0.93925 0.76432 0.93556 1.20802 1.18475 1.21765 0.93276 0.95651 1.25875 0.98629 0.97599 0.95087 1.70081 1.35104 1.43725 1.08214 0.86172 0.79613 0.78835 0.81000 1.18673 1.21865 1.13560 1.23330 0.97327 0.98145 0.99224 1.22457 0.94626 0.95212 1.02372 1.23301 0.96554 0.97387 0.99279 0.92160 0.91210 0.93698 0.89980 0.90875 0.90592 0.90921 0.95648 0.86851 0.93641 0.93943 0.92246 0.89558 0.94134 0.91196 0.87827 0.92350 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.67 71.98 0.70 -1.89 16 2 C -0.11 -2.21 5.08 30.59 0.16 -2.05 16 3 C -0.08 -2.10 1.75 -10.79 -0.02 -2.12 16 4 H 0.05 1.85 7.69 -2.38 -0.02 1.83 16 5 C -0.15 -3.71 8.71 71.98 0.63 -3.08 16 6 C -0.08 -2.62 2.41 -11.54 -0.03 -2.65 16 7 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 8 C -0.14 -4.43 8.70 71.98 0.63 -3.80 16 9 C 0.46 20.46 5.41 71.24 0.39 20.85 16 10 O -0.53 -28.31 14.58 21.97 0.32 -27.99 16 11 O -0.37 -17.31 8.04 -51.46 -0.41 -17.72 16 12 C 0.18 8.67 0.24 -11.01 0.00 8.67 16 13 C -0.51 -30.20 7.43 25.60 0.19 -30.01 16 14 H 0.03 1.75 8.05 -2.91 -0.02 1.73 16 15 C 0.03 1.67 5.47 84.66 0.46 2.13 16 16 N -0.93 -59.64 13.96 21.45 0.30 -59.34 16 17 Si 0.92 44.21 24.62 68.60 1.69 45.90 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.21 -9.48 5.63 99.48 0.56 -8.92 16 21 C -0.14 -6.08 6.83 31.18 0.21 -5.86 16 22 C -0.11 -4.01 7.81 31.18 0.24 -3.77 16 23 C -0.13 -5.13 6.11 31.12 0.19 -4.94 16 24 H 0.06 0.97 6.69 -2.39 -0.02 0.96 16 25 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 1.35 6.06 -2.39 -0.01 1.33 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.60 6.84 -2.39 -0.02 1.59 16 31 H 0.02 0.79 7.14 -2.39 -0.02 0.77 16 32 H 0.11 2.48 6.24 -2.39 -0.01 2.47 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 36 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.04 1.91 8.09 -2.39 -0.02 1.89 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.06 2.45 5.80 -2.38 -0.01 2.44 16 41 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -74.20 317.11 6.47 -67.72 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.84 Total: 19.96 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 3.74 Total: -28.54 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.30 Total: -59.34 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.09 Total: -45.71 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.69 Total: 45.90 kcal Total: -74.20 6.47 -67.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.908 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds