Wall clock time and date at job start Mon Mar 30 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.09002 * 109.47097 * 55.00131 * 3 2 1 5 5 C 1.52999 * 109.47628 * 295.00334 * 3 2 1 6 6 C 1.52997 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 11 11 O 1.45196 * 109.47152 * 60.00163 * 9 8 7 12 12 C 1.34233 * 117.00234 * 89.99838 * 11 9 8 13 13 O 1.20826 * 119.99883 * 0.02562 * 12 11 9 14 14 C 1.50695 * 120.00293 * 179.97438 * 12 11 9 15 15 C 1.52994 * 109.47245 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47222 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00211 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99793 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47472 * 60.00314 * 20 18 16 22 22 H 1.48510 * 109.47198 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47407 * 299.99783 * 20 18 16 24 24 H 1.09000 * 109.47396 * 299.99642 * 1 2 3 25 25 H 1.08998 * 109.47230 * 59.99893 * 1 2 3 26 26 H 1.09000 * 109.47081 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47396 * 240.00358 * 2 1 3 28 28 H 1.08998 * 109.47230 * 120.00107 * 2 1 3 29 29 H 1.08996 * 109.46929 * 59.99225 * 5 3 2 30 30 H 1.09002 * 109.46716 * 300.00030 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 37 37 H 1.09005 * 109.47102 * 300.00310 * 14 12 11 38 38 H 1.09001 * 109.47109 * 60.00090 * 14 12 11 39 39 H 1.09005 * 109.47292 * 300.00156 * 15 14 12 40 40 H 1.09001 * 109.47024 * 60.00000 * 15 14 12 41 41 H 0.97004 * 119.99621 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1267 -1.3073 6 6 2.1457 3.5690 -1.3075 7 6 3.6705 3.5702 -1.1821 8 6 4.0754 2.8862 0.1253 9 6 3.5648 1.4439 0.1255 10 1 3.8528 0.9566 1.0570 11 8 4.1433 0.7256 -0.9960 12 6 5.3098 0.0972 -0.7808 13 8 5.8300 0.1455 0.3086 14 6 5.9700 -0.6693 -1.8977 15 6 7.2757 -1.2853 -1.3913 16 6 7.9362 -2.0514 -2.5084 17 1 7.4715 -2.0943 -3.4823 18 6 9.1344 -2.6967 -2.2875 19 7 9.7012 -2.6432 -1.1019 20 14 9.9535 -3.6456 -3.6724 21 1 10.2452 -2.7237 -4.7994 22 1 11.2208 -4.2437 -3.1808 23 1 9.0455 -4.7246 -4.1378 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1253 -1.3968 30 1 2.0698 1.5877 -2.1491 31 1 1.7114 4.1083 -0.4656 32 1 1.8576 4.0562 -2.2390 33 1 4.1048 3.0310 -2.0239 34 1 4.0342 4.5978 -1.1818 35 1 5.1616 2.8874 0.2149 36 1 3.6410 3.4254 0.9671 37 1 5.3031 -1.4614 -2.2385 38 1 6.1839 0.0068 -2.7255 39 1 7.9427 -0.4935 -1.0502 40 1 7.0614 -1.9615 -0.5637 41 1 10.5440 -3.0976 -0.9463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812823494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:34 Heat of formation + Delta-G solvation = -151.261193 kcal Electronic energy + Delta-G solvation = -19448.104472 eV Core-core repulsion = 16518.493666 eV Total energy + Delta-G solvation = -2929.610806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78752 -39.56238 -36.83520 -35.65345 -34.87261 -33.17828 -31.26136 -29.87695 -28.00525 -24.80928 -24.61562 -23.20208 -21.93206 -21.45338 -20.27359 -18.99233 -17.96636 -17.40254 -17.18138 -16.48082 -16.16004 -15.71897 -15.28730 -14.95745 -14.49841 -14.30812 -14.22902 -14.21406 -13.58431 -13.31217 -13.28722 -12.89713 -12.80519 -12.56719 -12.49163 -12.33122 -12.10081 -12.01594 -11.84170 -11.75221 -11.65573 -11.42806 -11.39481 -11.24558 -10.88887 -10.76835 -10.57877 -8.20677 -6.34986 1.28004 1.42517 1.46996 1.54634 1.79901 2.42937 3.12913 3.55935 3.67877 3.77940 3.89546 4.11526 4.18996 4.29299 4.37101 4.42564 4.45405 4.48940 4.49846 4.56938 4.70917 4.77701 4.85396 4.91111 5.00334 5.01160 5.16767 5.21696 5.24993 5.27211 5.32102 5.39821 5.43824 5.51592 5.53169 5.55259 5.61692 5.79122 6.12204 6.80513 6.89969 7.35432 8.91898 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.004313 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.097772 B = 6489.999381 C = 6753.307490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.073 4.073 4 H 0.105 0.895 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.135 4.135 9 C 0.082 3.918 10 H 0.058 0.942 11 O -0.341 6.341 12 C 0.462 3.538 13 O -0.547 6.547 14 C -0.095 4.095 15 C 0.041 3.959 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.112 0.888 39 H -0.012 1.012 40 H -0.012 1.012 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.044 11.414 -0.996 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.091 4.091 4 H 0.123 0.877 5 C -0.149 4.149 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.172 4.172 9 C 0.027 3.973 10 H 0.077 0.923 11 O -0.258 6.258 12 C 0.307 3.693 13 O -0.438 6.438 14 C -0.132 4.132 15 C 0.003 3.997 16 C -0.583 4.583 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.212 1.212 23 H -0.187 1.187 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.784 11.402 -0.562 22.842 hybrid contribution 1.218 -0.676 0.140 1.400 sum -18.566 10.726 -0.422 21.446 Atomic orbital electron populations 1.21763 0.93697 1.02055 1.02703 1.21567 0.97570 0.95791 1.01343 1.21352 0.89725 0.97293 1.00774 0.87674 1.21596 1.01515 0.95558 0.96207 1.21525 0.93985 0.96589 1.02910 1.21485 0.97557 1.00229 0.96175 1.21951 1.00121 0.94448 1.00699 1.22989 0.94763 0.91852 0.87672 0.92344 1.86568 1.35465 1.61405 1.42338 1.24450 0.78979 0.76022 0.89806 1.90604 1.64441 1.60555 1.28162 1.21484 0.97352 0.99456 0.94908 1.18767 0.90913 0.94376 0.95609 1.21607 1.06606 1.32195 0.97938 0.90514 1.26105 0.97968 0.97558 0.98459 1.70162 1.18763 1.44484 1.24186 0.85357 0.77421 0.78818 0.78563 1.18694 1.21222 1.18694 0.91809 0.91411 0.92727 0.92753 0.93473 0.89640 0.92564 0.90584 0.90712 0.93122 0.90896 0.94119 0.88345 0.86931 0.86969 0.99400 0.99366 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 71.98 0.70 -1.49 16 2 C -0.13 -2.61 5.19 30.59 0.16 -2.45 16 3 C -0.07 -1.45 2.02 -10.79 -0.02 -1.47 16 4 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 5 C -0.11 -1.91 4.82 30.59 0.15 -1.76 16 6 C -0.11 -1.75 5.92 30.59 0.18 -1.57 16 7 C -0.12 -2.41 5.78 30.60 0.18 -2.24 16 8 C -0.13 -3.30 5.65 30.59 0.17 -3.12 16 9 C 0.08 2.26 2.17 30.60 0.07 2.32 16 10 H 0.06 1.88 7.16 -2.39 -0.02 1.86 16 11 O -0.34 -11.23 7.96 -51.45 -0.41 -11.64 16 12 C 0.46 18.98 7.93 71.23 0.56 19.54 16 13 O -0.55 -26.64 15.20 21.96 0.33 -26.31 16 14 C -0.09 -3.97 5.75 29.84 0.17 -3.80 16 15 C 0.04 2.26 4.26 29.85 0.13 2.39 16 16 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 19 N -0.94 -58.97 13.29 21.45 0.28 -58.68 16 20 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.88 6.56 -2.39 -0.02 0.87 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 1.31 7.83 -2.39 -0.02 1.29 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.12 6.56 -2.39 -0.02 1.11 16 30 H 0.06 1.18 7.68 -2.39 -0.02 1.16 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.24 7.68 -2.39 -0.02 1.22 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.11 4.22 8.14 -2.38 -0.02 4.20 16 38 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 39 H -0.01 -0.77 8.10 -2.38 -0.02 -0.79 16 40 H -0.01 -0.75 8.10 -2.39 -0.02 -0.77 16 41 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -70.43 326.33 6.34 -64.09 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.97 Total: 10.57 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 3.14 Total: -24.16 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.28 Total: -58.68 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.08 Total: -37.94 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.43 6.34 -64.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812823494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.172 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds