Wall clock time and date at job start Mon Mar 30 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.53001 * 109.47279 * 65.00040 * 3 2 1 6 6 C 1.52997 * 109.47577 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47181 * 299.99792 * 6 5 3 8 8 C 1.53005 * 109.46871 * 60.00177 * 7 6 5 9 9 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 10 10 H 1.09007 * 109.46964 * 60.00529 * 9 3 2 11 11 O 1.45200 * 109.47380 * 300.00371 * 9 3 2 12 12 C 1.34226 * 117.00003 * 150.00082 * 11 9 3 13 13 O 1.20828 * 120.00376 * 359.97438 * 12 11 9 14 14 C 1.50704 * 119.99945 * 179.97438 * 12 11 9 15 15 C 1.52998 * 109.47341 * 179.97438 * 14 12 11 16 16 C 1.50693 * 109.47216 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00013 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00084 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00146 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00210 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47203 * 59.99433 * 20 18 16 22 22 H 1.48498 * 109.47067 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47072 * 299.99530 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09001 * 109.46924 * 300.00271 * 5 3 2 30 30 H 1.09000 * 109.47104 * 59.99686 * 5 3 2 31 31 H 1.09003 * 109.47165 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46818 * 59.99916 * 6 5 3 33 33 H 1.09001 * 109.47615 * 300.00277 * 7 6 5 34 34 H 1.09000 * 109.47599 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47099 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.47443 * 59.99683 * 8 7 6 37 37 H 1.08997 * 109.46977 * 300.00067 * 14 12 11 38 38 H 1.09007 * 109.46951 * 59.99696 * 14 12 11 39 39 H 1.09006 * 109.46911 * 300.00343 * 15 14 12 40 40 H 1.08997 * 109.46942 * 59.99929 * 15 14 12 41 41 H 0.96998 * 120.00062 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1448 3.5691 1.3071 7 6 3.6696 3.5715 1.1812 8 6 4.0744 2.8875 -0.1262 9 6 3.5648 1.4442 -0.1257 10 1 3.8532 0.9569 -1.0571 11 8 4.1438 0.7261 0.9957 12 6 5.3105 0.0982 0.7803 13 8 5.8305 0.1466 -0.3093 14 6 5.9718 -0.6671 1.8975 15 6 7.2775 -1.2829 1.3907 16 6 7.9384 -2.0487 2.5077 17 1 7.4738 -2.0916 3.4817 18 6 9.1367 -2.6937 2.2865 19 7 9.7027 -2.6411 1.1005 20 14 9.9564 -3.6425 3.6712 21 1 9.0486 -4.7215 4.1370 22 1 11.2236 -4.2402 3.1794 23 1 10.2481 -2.7204 4.7981 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 0.5490 2.1252 1.3969 30 1 2.0699 1.5874 2.1492 31 1 1.8561 4.0566 2.2384 32 1 1.7099 4.1079 0.4654 33 1 4.1046 3.0326 2.0229 34 1 4.0326 4.5993 1.1806 35 1 5.1607 2.8896 -0.2162 36 1 3.6394 3.4263 -0.9680 37 1 6.1857 0.0097 2.7246 38 1 5.3055 -1.4593 2.2393 39 1 7.0630 -1.9598 0.5637 40 1 7.9438 -0.4910 1.0487 41 1 10.5456 -3.0952 0.9448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812823497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:37 Heat of formation + Delta-G solvation = -135.042215 kcal Electronic energy + Delta-G solvation = -19446.727868 eV Core-core repulsion = 16517.820370 eV Total energy + Delta-G solvation = -2928.907498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39660 -38.32651 -35.42463 -34.02162 -33.55497 -31.20797 -30.20884 -29.00001 -26.00943 -23.96281 -22.97828 -21.96863 -20.80769 -20.12444 -19.01765 -17.21287 -16.16260 -16.00608 -15.85865 -14.94335 -14.71893 -14.45893 -14.12234 -13.92744 -13.37850 -13.10128 -12.85203 -12.69044 -12.29332 -12.10058 -11.90985 -11.62510 -11.45424 -11.20184 -11.16588 -10.93439 -10.79967 -10.72990 -10.64653 -10.53843 -10.04047 -9.98062 -9.89047 -9.74547 -9.48118 -9.17081 -8.36118 -6.00072 -4.04994 2.90970 3.21936 3.33597 3.38314 3.40753 4.45195 4.50424 4.61461 4.69440 4.99441 5.03997 5.12900 5.24736 5.32694 5.35194 5.36339 5.41857 5.51476 5.54593 5.63582 5.75409 5.84554 5.91436 5.91460 6.03266 6.08383 6.13433 6.15489 6.17848 6.22713 6.27294 6.32755 6.45925 6.73376 7.04928 7.67878 7.75714 7.99777 8.29973 8.49104 9.02061 9.58963 11.10927 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.004313 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.095142 B = 6490.845043 C = 6754.112774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.080 4.080 4 H 0.082 0.918 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.135 4.135 9 C 0.091 3.909 10 H 0.080 0.920 11 O -0.353 6.353 12 C 0.454 3.546 13 O -0.508 6.508 14 C -0.104 4.104 15 C 0.034 3.966 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 10.629 -0.710 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.098 4.098 4 H 0.100 0.900 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.173 4.173 9 C 0.036 3.964 10 H 0.098 0.902 11 O -0.271 6.271 12 C 0.298 3.702 13 O -0.395 6.395 14 C -0.141 4.141 15 C -0.003 4.003 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.629 10.600 -1.169 20.603 hybrid contribution 0.603 -0.480 0.463 0.899 sum -17.026 10.120 -0.705 19.819 Atomic orbital electron populations 1.21806 0.95880 1.01523 1.01599 1.21561 0.95661 0.95987 1.02838 1.21297 0.92559 0.96889 0.99065 0.89984 1.21595 1.00198 0.95509 0.97801 1.21530 0.95816 0.96788 1.01372 1.21476 0.95856 1.00060 0.98122 1.21940 1.01808 0.94947 0.98597 1.22617 0.92549 0.91653 0.89613 0.90164 1.86603 1.37322 1.61912 1.41295 1.24725 0.78352 0.76299 0.90840 1.90614 1.63153 1.58959 1.26738 1.21735 0.99631 0.98391 0.94365 1.18995 0.88583 0.96032 0.96711 1.21124 1.06181 1.32329 0.97048 0.92410 1.25014 0.97145 0.96468 0.95635 1.69985 1.18188 1.43233 1.21428 0.86612 0.78728 0.80179 0.82195 1.20170 1.21254 1.20167 0.93048 0.92483 0.92844 0.90986 0.92124 0.91935 0.90820 0.92082 0.92411 0.91107 0.92230 0.91216 0.90829 0.89163 0.89161 0.95670 0.95677 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.35 5.19 -26.74 -0.14 -1.49 16 3 C -0.08 -0.86 2.02 -90.62 -0.18 -1.05 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.11 -1.13 4.82 -26.73 -0.13 -1.26 16 6 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 7 C -0.12 -1.31 5.78 -26.73 -0.15 -1.46 16 8 C -0.14 -1.69 5.65 -26.70 -0.15 -1.84 16 9 C 0.09 1.26 2.18 -26.70 -0.06 1.20 16 10 H 0.08 1.24 7.16 -51.92 -0.37 0.87 16 11 O -0.35 -5.76 7.97 -39.25 -0.31 -6.07 16 12 C 0.45 9.02 7.93 36.01 0.29 9.30 16 13 O -0.51 -11.67 15.20 -18.75 -0.29 -11.95 16 14 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 15 C 0.03 0.91 4.26 -27.89 -0.12 0.79 16 16 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.47 6.56 -51.93 -0.34 0.12 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 30 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 38 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -31.26 326.34 -8.27 -39.54 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.29 Total: -2.55 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.02 Total: -13.94 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.60 Total: -18.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.26 -8.27 -39.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812823497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.505 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds