Wall clock time and date at job start Mon Mar 30 2020 06:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.08993 * 109.47194 * 54.99781 * 3 2 1 5 5 C 1.53006 * 109.47127 * 294.99938 * 3 2 1 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46817 * 60.00361 * 6 5 3 8 8 C 1.52996 * 109.46972 * 299.99733 * 7 6 5 9 9 H 1.09001 * 109.46993 * 180.02562 * 8 7 6 10 10 O 1.45202 * 109.47244 * 299.99830 * 8 7 6 11 11 C 1.34225 * 117.00150 * 270.00062 * 10 8 7 12 12 O 1.20816 * 120.00589 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99628 * 180.02562 * 11 10 8 14 14 C 1.53007 * 109.46907 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46907 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99827 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99630 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00172 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99545 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47424 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47369 * 119.99945 * 19 17 15 22 22 H 1.48503 * 109.46835 * 239.99567 * 19 17 15 23 23 C 1.52997 * 109.47131 * 60.00459 * 8 7 6 24 24 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46849 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47227 * 59.99725 * 1 2 3 27 27 H 1.09006 * 109.46717 * 239.99823 * 2 1 3 28 28 H 1.09000 * 109.47227 * 120.00275 * 2 1 3 29 29 H 1.09001 * 109.46801 * 300.00272 * 5 3 2 30 30 H 1.09001 * 109.46998 * 59.99868 * 5 3 2 31 31 H 1.09002 * 109.47153 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46952 * 300.00302 * 6 5 3 33 33 H 1.08996 * 109.47407 * 60.00219 * 7 6 5 34 34 H 1.09000 * 109.46986 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47318 * 300.00016 * 13 11 10 36 36 H 1.09000 * 109.47589 * 60.00375 * 13 11 10 37 37 H 1.08998 * 109.46577 * 299.99633 * 14 13 11 38 38 H 1.09002 * 109.47368 * 60.00021 * 14 13 11 39 39 H 0.97004 * 120.00007 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47153 * 179.97438 * 23 8 7 41 41 H 1.08993 * 109.47194 * 60.00154 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.1457 3.5688 -1.3077 7 6 3.6706 3.5700 -1.1823 8 6 4.0754 2.8860 0.1250 9 1 5.1617 2.8873 0.2145 10 8 3.4970 3.6045 1.2464 11 6 4.2286 4.5969 1.7769 12 8 5.3160 4.8571 1.3192 13 6 3.6935 5.3867 2.9436 14 6 4.7158 6.4496 3.3516 15 6 4.1810 7.2390 4.5187 16 1 3.2091 7.0061 4.9281 17 6 4.9325 8.2584 5.0637 18 7 6.1162 8.5415 4.5655 19 14 4.2700 9.2363 6.5107 20 1 2.9262 8.7238 6.8809 21 1 5.1904 9.0941 7.6674 22 1 4.1663 10.6690 6.1339 23 6 3.5648 1.4437 0.1253 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.8570 4.0563 -2.2389 32 1 1.7115 4.1081 -0.4658 33 1 4.1048 3.0308 -2.0242 34 1 4.0344 4.5975 -1.1830 35 1 2.7605 5.8717 2.6567 36 1 3.5113 4.7162 3.7834 37 1 5.6490 5.9649 3.6384 38 1 4.8977 7.1202 2.5118 39 1 6.6451 9.2584 4.9492 40 1 3.8536 0.9562 1.0565 41 1 3.9991 0.9044 -0.7165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813069912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:16 Heat of formation + Delta-G solvation = -136.134979 kcal Electronic energy + Delta-G solvation = -19188.877441 eV Core-core repulsion = 16259.922558 eV Total energy + Delta-G solvation = -2928.954884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32632 -38.44058 -35.77126 -33.61385 -33.50527 -31.19588 -30.47901 -28.94474 -26.03469 -24.03718 -22.76258 -22.24912 -20.72188 -20.19562 -19.03663 -17.20868 -16.18573 -16.03453 -15.65879 -15.18625 -14.87120 -14.46048 -14.08800 -13.70017 -13.55239 -13.01161 -12.98223 -12.53333 -12.41266 -12.14796 -11.89532 -11.77488 -11.49321 -11.23596 -11.17736 -11.00092 -10.95226 -10.64323 -10.60788 -10.45882 -10.04754 -10.00355 -9.91307 -9.77244 -9.49994 -9.14549 -8.37117 -6.00657 -4.05356 2.90093 3.21075 3.31286 3.38818 3.42688 4.45056 4.51942 4.56682 4.69105 4.94888 5.01210 5.09450 5.19873 5.31028 5.33089 5.34827 5.45951 5.49814 5.53698 5.58260 5.71477 5.77928 5.85278 5.90923 5.93488 6.03381 6.10724 6.15025 6.18356 6.21873 6.24755 6.30318 6.45749 6.72941 7.03980 7.68212 7.75442 7.99436 8.29483 8.48258 9.02133 9.58692 11.10403 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.003952 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.685803 B = 7083.661057 C = 7448.935412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.082 0.918 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.135 4.135 8 C 0.086 3.914 9 H 0.081 0.919 10 O -0.356 6.356 11 C 0.454 3.546 12 O -0.508 6.508 13 C -0.104 4.104 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.108 4.108 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -16.014 -11.511 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.100 0.900 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.172 4.172 8 C 0.031 3.969 9 H 0.099 0.901 10 O -0.274 6.274 11 C 0.298 3.702 12 O -0.394 6.394 13 C -0.141 4.141 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.148 -15.839 -11.657 21.690 hybrid contribution -0.058 0.606 0.661 0.898 sum -9.206 -15.233 -10.996 20.922 Atomic orbital electron populations 1.21816 0.95978 1.01241 1.02051 1.21574 0.95910 0.96506 1.01705 1.21160 0.94875 0.95687 0.98855 0.89985 1.21623 1.00557 0.95654 0.97147 1.21476 0.95149 0.96919 1.02002 1.21923 0.97007 1.01667 0.96639 1.22570 0.98568 0.91133 0.84646 0.90116 1.86617 1.49204 1.45728 1.45878 1.24732 0.83496 0.77920 0.84037 1.90611 1.21908 1.65852 1.61077 1.21740 1.02685 0.97856 0.91847 1.19013 0.93041 0.91684 0.96684 1.21205 1.03515 1.16502 1.15329 0.92282 1.25024 0.94869 0.97220 0.97251 1.70006 1.10979 1.30524 1.41295 0.86494 0.79009 0.79885 0.82350 1.19644 1.20967 1.20972 1.21693 0.96334 0.93958 1.02587 0.93134 0.92611 0.92558 0.92303 0.92055 0.92378 0.91805 0.92177 0.91140 0.90810 0.91266 0.89134 0.89121 0.95645 0.95646 0.92926 0.91180 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -0.99 5.40 -26.73 -0.14 -1.14 16 3 C -0.09 -0.87 2.05 -90.62 -0.19 -1.05 16 4 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 5 C -0.11 -1.05 4.96 -26.73 -0.13 -1.19 16 6 C -0.12 -1.31 5.78 -26.73 -0.15 -1.46 16 7 C -0.13 -1.68 5.65 -26.73 -0.15 -1.83 16 8 C 0.09 1.19 2.75 -26.73 -0.07 1.11 16 9 H 0.08 1.23 7.15 -51.93 -0.37 0.86 16 10 O -0.36 -5.88 8.54 -39.25 -0.34 -6.22 16 11 C 0.45 9.08 7.93 36.01 0.29 9.37 16 12 O -0.51 -11.70 15.20 -18.74 -0.28 -11.99 16 13 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 14 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 15 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.11 -1.16 4.95 -26.73 -0.13 -1.29 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -31.43 327.19 -8.30 -39.73 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.31 Total: -3.06 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.02 Total: -13.47 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.62 Total: -18.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.43 -8.30 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813069912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.404 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds