Wall clock time and date at job start Mon Mar 30 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.08993 * 109.47194 * 54.99781 * 3 2 1 5 5 C 1.53006 * 109.47127 * 294.99938 * 3 2 1 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46817 * 60.00361 * 6 5 3 8 8 C 1.52996 * 109.46972 * 299.99733 * 7 6 5 9 9 H 1.09001 * 109.46993 * 180.02562 * 8 7 6 10 10 O 1.45202 * 109.47244 * 299.99830 * 8 7 6 11 11 C 1.34225 * 117.00150 * 270.00062 * 10 8 7 12 12 O 1.20816 * 120.00589 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99628 * 180.02562 * 11 10 8 14 14 C 1.53007 * 109.46907 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46907 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99827 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99630 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00172 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99545 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47424 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47369 * 119.99945 * 19 17 15 22 22 H 1.48503 * 109.46835 * 239.99567 * 19 17 15 23 23 C 1.52997 * 109.47131 * 60.00459 * 8 7 6 24 24 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46849 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47227 * 59.99725 * 1 2 3 27 27 H 1.09006 * 109.46717 * 239.99823 * 2 1 3 28 28 H 1.09000 * 109.47227 * 120.00275 * 2 1 3 29 29 H 1.09001 * 109.46801 * 300.00272 * 5 3 2 30 30 H 1.09001 * 109.46998 * 59.99868 * 5 3 2 31 31 H 1.09002 * 109.47153 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.46952 * 300.00302 * 6 5 3 33 33 H 1.08996 * 109.47407 * 60.00219 * 7 6 5 34 34 H 1.09000 * 109.46986 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47318 * 300.00016 * 13 11 10 36 36 H 1.09000 * 109.47589 * 60.00375 * 13 11 10 37 37 H 1.08998 * 109.46577 * 299.99633 * 14 13 11 38 38 H 1.09002 * 109.47368 * 60.00021 * 14 13 11 39 39 H 0.97004 * 120.00007 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.47153 * 179.97438 * 23 8 7 41 41 H 1.08993 * 109.47194 * 60.00154 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.1457 3.5688 -1.3077 7 6 3.6706 3.5700 -1.1823 8 6 4.0754 2.8860 0.1250 9 1 5.1617 2.8873 0.2145 10 8 3.4970 3.6045 1.2464 11 6 4.2286 4.5969 1.7769 12 8 5.3160 4.8571 1.3192 13 6 3.6935 5.3867 2.9436 14 6 4.7158 6.4496 3.3516 15 6 4.1810 7.2390 4.5187 16 1 3.2091 7.0061 4.9281 17 6 4.9325 8.2584 5.0637 18 7 6.1162 8.5415 4.5655 19 14 4.2700 9.2363 6.5107 20 1 2.9262 8.7238 6.8809 21 1 5.1904 9.0941 7.6674 22 1 4.1663 10.6690 6.1339 23 6 3.5648 1.4437 0.1253 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.8570 4.0563 -2.2389 32 1 1.7115 4.1081 -0.4658 33 1 4.1048 3.0308 -2.0242 34 1 4.0344 4.5975 -1.1830 35 1 2.7605 5.8717 2.6567 36 1 3.5113 4.7162 3.7834 37 1 5.6490 5.9649 3.6384 38 1 4.8977 7.1202 2.5118 39 1 6.6451 9.2584 4.9492 40 1 3.8536 0.9562 1.0565 41 1 3.9991 0.9044 -0.7165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813069912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:15 Heat of formation + Delta-G solvation = -152.434714 kcal Electronic energy + Delta-G solvation = -19189.584251 eV Core-core repulsion = 16259.922558 eV Total energy + Delta-G solvation = -2929.661693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.73320 -39.58593 -37.13826 -35.65546 -34.44518 -33.14094 -31.49507 -29.77731 -28.03157 -25.00269 -24.26413 -23.36261 -21.89669 -21.45839 -20.26479 -18.98612 -17.98070 -17.41353 -17.06034 -16.47359 -16.33678 -15.70560 -15.22912 -14.84713 -14.62140 -14.31283 -14.21427 -13.98322 -13.65826 -13.33221 -13.25118 -12.90589 -12.82958 -12.72485 -12.47870 -12.28244 -12.06100 -12.02411 -11.89692 -11.75085 -11.56946 -11.40976 -11.29538 -11.22327 -10.89452 -10.77796 -10.59835 -8.21097 -6.35129 1.27160 1.42673 1.43856 1.57402 1.79372 2.42660 3.12641 3.64262 3.67222 3.79799 3.88645 4.10837 4.18149 4.30227 4.38164 4.43295 4.45369 4.49243 4.55151 4.61041 4.75502 4.80819 4.83059 4.90652 5.02755 5.05922 5.11606 5.20395 5.25920 5.29108 5.32912 5.41866 5.43943 5.50595 5.53407 5.59761 5.66697 5.79345 6.12223 6.80627 6.89240 7.35268 8.91846 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.034193 B = 0.003952 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.685803 B = 7083.661057 C = 7448.935412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.086 4.086 4 H 0.061 0.939 5 C -0.107 4.107 6 C -0.117 4.117 7 C -0.133 4.133 8 C 0.076 3.924 9 H 0.062 0.938 10 O -0.346 6.346 11 C 0.462 3.538 12 O -0.547 6.547 13 C -0.095 4.095 14 C 0.039 3.961 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.975 3.025 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.103 4.103 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.112 0.888 36 H 0.113 0.887 37 H -0.011 1.011 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.068 0.932 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.809 -17.407 -11.630 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.104 4.104 4 H 0.079 0.921 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.171 4.171 8 C 0.022 3.978 9 H 0.080 0.920 10 O -0.263 6.263 11 C 0.308 3.692 12 O -0.437 6.437 13 C -0.132 4.132 14 C 0.002 3.998 15 C -0.582 4.582 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.799 3.201 20 H -0.177 1.177 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.140 4.140 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.357 -17.264 -11.783 23.788 hybrid contribution 0.643 0.984 0.619 1.328 sum -10.715 -16.280 -11.164 22.461 Atomic orbital electron populations 1.21818 0.95537 1.01839 1.01904 1.21532 0.96252 0.95119 1.02332 1.21136 0.93967 0.96836 0.98507 0.92055 1.21607 1.01307 0.94198 0.97319 1.21476 0.93741 0.98359 1.01836 1.21940 0.98341 1.00160 0.96656 1.22966 0.97726 0.92951 0.84199 0.91974 1.86585 1.48379 1.44571 1.46730 1.24458 0.82871 0.78232 0.83662 1.90602 1.23622 1.67171 1.62287 1.21494 1.01449 0.97070 0.93205 1.18786 0.93265 0.92427 0.95305 1.21673 1.04233 1.16681 1.15580 0.90495 1.26115 0.94992 0.98552 1.00575 1.70169 1.12722 1.31427 1.43260 0.85247 0.78981 0.77899 0.77967 1.17684 1.20531 1.20550 1.21739 0.97143 0.91428 1.03690 0.92193 0.93441 0.92056 0.90935 0.92184 0.90605 0.90716 0.90820 0.93202 0.88246 0.94126 0.86965 0.86862 0.99286 0.99328 0.92731 0.91323 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 71.98 0.70 -1.29 16 2 C -0.11 -1.58 5.40 30.59 0.17 -1.42 16 3 C -0.09 -1.52 2.05 -10.79 -0.02 -1.54 16 4 H 0.06 1.35 7.68 -2.39 -0.02 1.33 16 5 C -0.11 -1.71 4.96 30.60 0.15 -1.55 16 6 C -0.12 -2.41 5.78 30.59 0.18 -2.24 16 7 C -0.13 -3.23 5.65 30.59 0.17 -3.06 16 8 C 0.08 2.08 2.75 30.59 0.08 2.16 16 9 H 0.06 1.94 7.15 -2.39 -0.02 1.92 16 10 O -0.35 -11.44 8.54 -51.37 -0.44 -11.88 16 11 C 0.46 18.96 7.93 71.24 0.56 19.53 16 12 O -0.55 -26.49 15.20 21.99 0.33 -26.15 16 13 C -0.09 -3.97 5.75 29.85 0.17 -3.80 16 14 C 0.04 2.19 4.26 29.85 0.13 2.32 16 15 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 17 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 18 N -0.94 -58.84 13.29 21.45 0.28 -58.55 16 19 Si 0.98 44.13 29.54 68.60 2.03 46.16 16 20 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.10 -2.01 4.95 30.59 0.15 -1.86 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.07 6.56 -2.39 -0.02 1.05 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.23 7.68 -2.39 -0.02 1.21 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 4.21 8.14 -2.38 -0.02 4.19 16 36 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 37 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 38 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 39 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.24 327.19 6.31 -63.93 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.97 Total: 9.72 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.14 Total: -23.22 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.28 Total: -58.55 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.10 Total: -38.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.24 6.31 -63.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813069912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.508 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds