Wall clock time and date at job start Mon Mar 30 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 O 1.45196 * 109.46808 * 119.99671 * 2 1 3 5 5 C 1.34233 * 117.00428 * 270.00056 * 4 2 1 6 6 O 1.20826 * 119.99883 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00293 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47158 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46804 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00541 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99570 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00200 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99794 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47225 * 90.00155 * 13 11 9 15 15 H 1.48502 * 109.47103 * 210.00494 * 13 11 9 16 16 H 1.48502 * 109.47448 * 329.99940 * 13 11 9 17 17 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 2 1 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 2 20 20 C 1.53002 * 109.47233 * 299.99657 * 19 18 17 21 21 C 1.52997 * 109.46817 * 60.00194 * 20 19 18 22 22 C 1.52999 * 109.46961 * 300.00361 * 17 2 1 23 23 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 25 25 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47188 * 300.00390 * 7 5 4 27 27 H 1.09005 * 109.47102 * 59.99690 * 7 5 4 28 28 H 1.08998 * 109.47450 * 299.99609 * 8 7 5 29 29 H 1.08993 * 109.46837 * 60.00513 * 8 7 5 30 30 H 0.96999 * 120.00399 * 179.97438 * 12 11 9 31 31 H 1.09002 * 109.47103 * 59.99753 * 17 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 18 17 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 18 17 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 35 35 H 1.09004 * 109.46724 * 180.02562 * 19 18 17 36 36 H 1.08993 * 109.47662 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47075 * 300.00932 * 20 19 18 38 38 H 1.09002 * 109.47153 * 60.00231 * 21 20 19 39 39 H 1.09001 * 109.47289 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47486 * 59.99547 * 22 17 2 41 41 H 1.09002 * 109.46716 * 299.99630 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 2.2170 0.0641 2.2812 6 8 1.9973 1.2518 2.2507 7 6 2.7191 -0.5769 3.5492 8 6 2.8642 0.4894 4.6369 9 6 3.3657 -0.1518 5.9051 10 1 3.5618 -1.2135 5.9326 11 6 3.5742 0.6171 7.0305 12 7 3.3350 1.9098 6.9973 13 14 4.1965 -0.1775 8.6023 14 1 5.6813 -0.1542 8.6146 15 1 3.6799 0.5734 9.7747 16 1 3.7230 -1.5835 8.6674 17 6 2.0400 -0.7212 -1.2492 18 6 3.5700 -0.7206 -1.2495 19 6 4.0800 -1.4413 -2.4990 20 6 3.5706 -2.8841 -2.4994 21 6 2.0406 -2.8846 -2.4990 22 6 1.5300 -2.1637 -1.2492 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.0103 -1.3371 3.8774 27 1 3.6882 -1.0399 3.3632 28 1 3.5733 1.2492 4.3085 29 1 1.8953 0.9526 4.8230 30 1 3.4813 2.4506 7.7891 31 1 1.6767 -0.2074 -2.1392 32 1 3.9337 -1.2342 -0.3595 33 1 3.9329 0.3072 -1.2497 34 1 3.7163 -0.9274 -3.3888 35 1 5.1700 -1.4413 -2.4990 36 1 3.9342 -3.3977 -3.3893 37 1 3.9342 -3.3979 -1.6095 38 1 1.6769 -2.3707 -3.3888 39 1 1.6776 -3.9124 -2.4988 40 1 0.4400 -2.1637 -1.2492 41 1 1.8933 -2.6775 -0.3592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813081853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:42 Heat of formation + Delta-G solvation = -135.758965 kcal Electronic energy + Delta-G solvation = -19232.706150 eV Core-core repulsion = 16303.767572 eV Total energy + Delta-G solvation = -2928.938579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.24174 -38.58269 -36.05047 -33.56629 -32.92120 -31.04274 -30.88483 -28.96925 -26.09934 -24.07014 -22.64417 -22.32616 -20.61320 -20.05708 -19.26794 -17.30066 -16.36300 -15.88012 -15.67717 -14.98438 -14.48668 -14.34034 -14.20879 -13.99046 -13.69505 -13.19688 -12.89160 -12.53324 -12.27756 -12.17426 -11.99842 -11.74923 -11.27211 -11.22609 -11.19338 -10.99643 -10.94173 -10.64476 -10.56065 -10.45961 -10.04608 -10.02868 -9.94407 -9.81725 -9.49404 -9.15994 -8.36665 -6.00429 -4.05222 2.90275 3.20867 3.32255 3.38603 3.41785 4.45064 4.47863 4.56269 4.63392 4.99245 5.08277 5.09399 5.24344 5.26840 5.34973 5.39708 5.42517 5.43182 5.52701 5.56772 5.67603 5.86751 5.88455 5.92059 6.02827 6.05323 6.11581 6.14582 6.15157 6.18199 6.24221 6.31379 6.44844 6.72872 7.04066 7.68024 7.75528 7.99539 8.29559 8.48307 9.02052 9.58759 11.10621 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.033067 B = 0.004022 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.570087 B = 6959.783381 C = 7312.972731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.085 3.915 3 H 0.081 0.919 4 O -0.357 6.357 5 C 0.455 3.545 6 O -0.508 6.508 7 C -0.104 4.104 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.079 4.079 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.115 4.115 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -8.479 -19.744 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.030 3.970 3 H 0.099 0.901 4 O -0.275 6.275 5 C 0.298 3.702 6 O -0.394 6.394 7 C -0.141 4.141 8 C -0.004 4.004 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.098 4.098 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.153 4.153 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.655 -7.944 -19.673 21.382 hybrid contribution 0.265 -0.128 0.838 0.888 sum -2.390 -8.072 -18.835 20.631 Atomic orbital electron populations 1.22228 0.94869 1.02848 1.02783 1.22628 0.94082 0.97076 0.83183 0.90095 1.86609 1.77395 1.42964 1.20504 1.24723 0.73813 0.86369 0.85247 1.90615 1.47805 1.17080 1.83928 1.21737 1.01620 1.01895 0.88880 1.19006 0.98491 0.92487 0.90405 1.21166 1.45002 0.94696 0.95770 0.92341 1.25019 0.95495 0.94813 0.98983 1.69991 1.48315 1.05042 1.29469 0.86549 0.79026 0.79355 0.82794 1.20603 1.21191 1.19788 1.21290 0.96163 0.96694 0.95608 1.21586 0.94574 1.00661 0.98745 1.21514 1.00175 0.95789 0.97990 1.21544 0.95784 0.96791 1.01686 1.21548 0.95692 1.00198 0.98172 1.21621 1.00233 0.94835 0.98565 0.91888 0.91299 0.91429 0.89119 0.89141 0.95652 0.95647 0.92865 0.89993 0.90907 0.92143 0.92295 0.92078 0.92425 0.91789 0.92354 0.92171 0.91792 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.20 37.16 0.34 -1.73 16 2 C 0.09 1.17 2.29 -26.74 -0.06 1.11 16 3 H 0.08 1.24 7.16 -51.93 -0.37 0.87 16 4 O -0.36 -5.85 8.54 -39.27 -0.34 -6.19 16 5 C 0.45 9.06 7.93 36.00 0.29 9.35 16 6 O -0.51 -11.69 15.20 -18.75 -0.29 -11.97 16 7 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 8 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 9 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 13 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.08 -0.86 2.08 -90.63 -0.19 -1.04 16 18 C -0.12 -1.31 5.06 -26.73 -0.14 -1.45 16 19 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 20 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 21 C -0.12 -1.00 5.92 -26.70 -0.16 -1.16 16 22 C -0.12 -1.15 4.71 -26.70 -0.13 -1.28 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 26 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 41 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -31.38 326.83 -8.32 -39.70 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.29 Total: -2.76 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.05 Total: -13.77 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.62 Total: -18.16 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.38 -8.32 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813081853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.061 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds