Wall clock time and date at job start Mon Mar 30 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47338 * 2 1 4 4 O 1.45198 * 109.47083 * 239.99419 * 2 1 3 5 5 C 1.34221 * 116.99903 * 90.00229 * 4 2 1 6 6 O 1.20826 * 120.00367 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00092 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47238 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00290 * 0.02562 * 9 8 7 11 11 C 1.37887 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99654 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47022 * 89.99986 * 13 11 9 15 15 H 1.48502 * 109.46769 * 209.99494 * 13 11 9 16 16 H 1.48495 * 109.47280 * 329.99669 * 13 11 9 17 17 C 1.53002 * 109.46830 * 119.99520 * 2 1 3 18 18 C 1.53004 * 109.47428 * 299.99820 * 17 2 1 19 19 C 1.52998 * 109.47079 * 180.02562 * 18 17 2 20 20 C 1.53003 * 109.47203 * 60.00596 * 19 18 17 21 21 C 1.53005 * 109.46432 * 299.99341 * 20 19 18 22 22 C 1.53001 * 109.47075 * 179.97438 * 17 2 1 23 23 H 1.08996 * 109.46761 * 60.00207 * 1 2 3 24 24 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46662 * 300.00373 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99668 * 7 5 4 27 27 H 1.09000 * 109.47318 * 59.99266 * 7 5 4 28 28 H 1.09001 * 109.46832 * 299.99686 * 8 7 5 29 29 H 1.09004 * 109.47261 * 59.99705 * 8 7 5 30 30 H 0.96999 * 119.99682 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.47558 * 59.99819 * 17 2 1 32 32 H 1.09003 * 109.46751 * 300.00494 * 18 17 2 33 33 H 1.08998 * 109.46649 * 60.00013 * 18 17 2 34 34 H 1.08993 * 109.47190 * 299.99741 * 19 18 17 35 35 H 1.09006 * 109.46784 * 180.02562 * 19 18 17 36 36 H 1.08996 * 109.46950 * 179.97438 * 20 19 18 37 37 H 1.08993 * 109.47287 * 59.99214 * 20 19 18 38 38 H 1.08993 * 109.47281 * 299.99876 * 21 20 19 39 39 H 1.09006 * 109.46852 * 179.97438 * 21 20 19 40 40 H 1.08996 * 109.47190 * 300.00006 * 22 17 2 41 41 H 1.09006 * 109.46632 * 60.00110 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2172 0.0638 -2.2810 6 8 1.9975 1.2515 -2.2507 7 6 2.7183 -0.5776 -3.5494 8 6 2.8637 0.4886 -4.6370 9 6 3.3653 -0.1526 -5.9051 10 1 3.5606 -1.2145 -5.9327 11 6 3.5742 0.6161 -7.0306 12 7 4.0115 0.0564 -8.1374 13 14 3.2358 2.4526 -6.9831 14 1 4.4664 3.1720 -6.5665 15 1 2.8250 2.9153 -8.3330 16 1 2.1473 2.7305 -6.0120 17 6 2.0400 -0.7212 1.2493 18 6 1.5300 0.0002 2.4986 19 6 2.0405 -0.7206 3.7478 20 6 3.5705 -0.7200 3.7476 21 6 4.0805 -1.4415 2.4984 22 6 3.5700 -0.7218 1.2491 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.6872 -1.0412 -3.3639 27 1 2.0088 -1.3373 -3.8773 28 1 1.8950 0.9526 -4.8227 29 1 3.5734 1.2480 -4.3089 30 1 4.1587 0.5973 -8.9290 31 1 1.6766 -1.7488 1.2495 32 1 1.8934 1.0279 2.4984 33 1 0.4400 0.0002 2.4985 34 1 1.6775 -1.7483 3.7481 35 1 1.6768 -0.2070 4.6378 36 1 3.9342 -1.2332 4.6378 37 1 3.9335 0.3077 3.7472 38 1 3.7175 -2.4692 2.4987 39 1 5.1705 -1.4407 2.4979 40 1 3.9330 -1.2359 0.3592 41 1 3.9337 0.3059 1.2488 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813081855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:45 Heat of formation + Delta-G solvation = -133.335926 kcal Electronic energy + Delta-G solvation = -19142.050481 eV Core-core repulsion = 16213.216973 eV Total energy + Delta-G solvation = -2928.833508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33516 -38.74371 -36.23833 -33.61911 -33.05554 -31.35627 -30.96817 -29.03869 -26.55861 -24.15989 -22.65078 -22.00152 -20.59787 -20.08970 -19.58432 -17.53796 -16.70675 -16.17204 -15.75764 -15.19506 -14.55404 -14.37408 -14.13933 -13.95538 -13.53425 -13.36185 -13.11191 -12.66705 -12.57058 -12.37477 -12.11268 -11.69341 -11.64336 -11.44441 -11.31605 -11.06016 -10.98831 -10.61709 -10.56658 -10.33052 -10.27492 -10.14537 -9.98199 -9.88461 -9.63532 -9.24923 -8.55140 -6.06752 -4.06413 2.74768 3.05631 3.34595 3.41482 3.50894 4.37387 4.46746 4.51025 4.54758 4.84338 5.00066 5.02284 5.12024 5.20616 5.22037 5.28058 5.31888 5.34747 5.42282 5.48961 5.60030 5.73346 5.82245 5.83634 5.92423 5.94439 5.95063 5.99782 6.01788 6.05951 6.15693 6.23625 6.28799 6.54771 6.89132 7.25265 7.32530 7.71904 8.27619 8.48209 8.95818 9.55187 11.05892 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.038530 B = 0.003995 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.530313 B = 7006.939270 C = 7250.204316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 H 0.081 0.919 4 O -0.357 6.357 5 C 0.457 3.543 6 O -0.513 6.513 7 C -0.096 4.096 8 C -0.002 4.002 9 C -0.527 4.527 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.901 5.901 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.081 4.081 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.117 4.117 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 -2.378 23.947 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.030 3.970 3 H 0.099 0.901 4 O -0.275 6.275 5 C 0.301 3.699 6 O -0.400 6.400 7 C -0.134 4.134 8 C -0.039 4.039 9 C -0.564 4.564 10 H 0.093 0.907 11 C -0.131 4.131 12 N -0.539 5.539 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.099 4.099 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.155 4.155 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.313 -1.974 23.798 24.266 hybrid contribution -0.176 1.093 -0.112 1.112 sum -4.489 -0.881 23.685 24.123 Atomic orbital electron populations 1.22242 0.94774 1.02839 1.02893 1.22660 0.94139 0.97261 0.82891 0.90061 1.86601 1.77290 1.43002 1.20562 1.24697 0.73641 0.86267 0.85329 1.90598 1.48198 1.17145 1.84084 1.21528 1.02426 1.01302 0.88128 1.19471 0.97873 0.93775 0.92798 1.21043 1.44765 0.96863 0.93776 0.90665 1.24959 0.94295 0.98630 0.95236 1.69905 1.45932 1.36196 1.01889 0.86803 0.79618 0.85786 0.77391 1.20165 1.21313 1.18610 1.21236 0.96219 1.00333 0.92132 1.21630 1.00575 0.99501 0.93531 1.21507 0.95803 1.00764 0.97371 1.21560 0.95640 1.00826 0.97850 1.21516 1.00265 0.99425 0.94365 1.21567 0.94467 1.01060 0.98380 0.91912 0.91680 0.90887 0.88459 0.88416 0.95659 0.96103 0.92611 0.90144 0.91731 0.91390 0.91903 0.92006 0.92210 0.92054 0.91937 0.91975 0.90955 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.20 37.16 0.34 -1.64 16 2 C 0.09 1.13 2.14 -26.73 -0.06 1.07 16 3 H 0.08 1.19 7.16 -51.93 -0.37 0.82 16 4 O -0.36 -5.70 9.21 -39.23 -0.36 -6.07 16 5 C 0.46 8.66 7.93 36.01 0.29 8.95 16 6 O -0.51 -11.08 15.20 -18.75 -0.29 -11.36 16 7 C -0.10 -1.91 5.75 -27.88 -0.16 -2.07 16 8 C 0.00 -0.04 3.33 -27.89 -0.09 -0.13 16 9 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 10 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 12 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 13 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 17 C -0.08 -0.84 2.00 -90.62 -0.18 -1.02 16 18 C -0.11 -0.97 4.85 -26.73 -0.13 -1.10 16 19 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 20 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -1.03 5.92 -26.75 -0.16 -1.19 16 22 C -0.12 -1.25 5.06 -26.76 -0.14 -1.39 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 26 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 27 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 28 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 29 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -31.54 324.26 -7.97 -39.51 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -7.28 Total: -3.66 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.03 Total: -13.98 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.65 Total: -17.43 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.54 -7.97 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813081855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.825 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds