Wall clock time and date at job start Mon Mar 30 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46802 * 2 1 4 4 C 1.50702 * 109.47139 * 240.00205 * 2 1 3 5 5 H 1.07998 * 120.00113 * 241.35810 * 4 2 1 6 6 C 1.37877 * 119.99621 * 61.35975 * 4 2 1 7 7 N 1.31522 * 119.99844 * 193.95947 * 6 4 2 8 8 Si 1.86796 * 120.00460 * 13.96252 * 6 4 2 9 9 H 1.48503 * 109.47017 * 84.55332 * 8 6 4 10 10 H 1.48497 * 109.47383 * 204.55430 * 8 6 4 11 11 H 1.48500 * 109.47293 * 324.55546 * 8 6 4 12 12 C 1.52998 * 109.47110 * 120.00265 * 2 1 3 13 13 O 1.45204 * 109.46791 * 299.99966 * 12 2 1 14 14 C 1.34233 * 116.99430 * 180.02562 * 13 12 2 15 15 O 1.20820 * 120.00305 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99470 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46741 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46878 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.47174 * 180.02562 * 18 17 16 20 20 C 1.52997 * 117.49758 * 243.74853 * 19 18 17 21 21 C 1.52993 * 117.50193 * 175.08969 * 19 18 17 22 22 H 1.08995 * 109.47066 * 309.31434 * 1 2 3 23 23 H 1.09003 * 109.47076 * 69.31428 * 1 2 3 24 24 H 1.09001 * 109.46834 * 189.31056 * 1 2 3 25 25 H 1.09005 * 109.47136 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47820 * 300.00396 * 3 2 1 27 27 H 1.09009 * 109.47111 * 60.00268 * 3 2 1 28 28 H 0.96991 * 120.00295 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.46788 * 180.02562 * 12 2 1 30 30 H 1.08991 * 109.47214 * 60.00050 * 12 2 1 31 31 H 1.08992 * 109.47298 * 299.99947 * 16 14 13 32 32 H 1.08994 * 109.46938 * 60.00718 * 16 14 13 33 33 H 1.08995 * 109.47483 * 300.00492 * 17 16 14 34 34 H 1.09002 * 109.46953 * 60.00408 * 17 16 14 35 35 H 1.09002 * 109.46916 * 299.99904 * 18 17 16 36 36 H 1.09002 * 109.47122 * 60.00356 * 18 17 16 37 37 H 1.08999 * 115.54893 * 29.41019 * 19 18 17 38 38 H 1.09000 * 117.50180 * 359.97438 * 20 19 18 39 39 H 1.09000 * 117.50231 * 145.01617 * 20 19 18 40 40 H 1.08999 * 117.49889 * 214.97908 * 21 19 18 41 41 H 1.09003 * 117.49468 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6351 -1.6011 -1.1316 6 6 1.7226 -0.2231 -2.4825 7 7 1.9163 -0.9721 -3.5461 8 14 1.0278 1.5009 -2.6683 9 1 2.1419 2.4820 -2.7080 10 1 0.2473 1.5869 -3.9287 11 1 0.1418 1.8044 -1.5158 12 6 2.0400 -0.7213 1.2492 13 8 1.5560 -0.0368 2.4348 14 6 1.9171 -0.5467 3.6228 15 8 2.6149 -1.5319 3.6705 16 6 1.4531 0.1106 4.8972 17 6 2.0001 -0.6632 6.0984 18 6 1.5285 0.0036 7.3922 19 6 2.0760 -0.7698 8.5935 20 6 1.0630 -1.4451 9.5201 21 6 1.8105 -0.1931 9.9855 22 1 -0.3633 0.6511 0.7950 23 1 -0.3633 0.3630 -0.9614 24 1 -0.3633 -1.0142 0.1663 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6987 -0.6292 -4.4269 29 1 3.1300 -0.7209 1.2494 30 1 1.6768 -1.7489 1.2492 31 1 1.8170 1.1375 4.9297 32 1 0.3637 0.1098 4.9305 33 1 1.6360 -1.6900 6.0657 34 1 3.0896 -0.6629 6.0653 35 1 1.8925 1.0306 7.4252 36 1 0.4390 0.0029 7.4251 37 1 3.0269 -1.2776 8.4320 38 1 0.0065 -1.3381 9.2742 39 1 1.3475 -2.3969 9.9685 40 1 2.5867 -0.3217 10.7400 41 1 1.2462 0.7375 10.0455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813087117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:17 Heat of formation + Delta-G solvation = -91.326613 kcal Electronic energy + Delta-G solvation = -18732.048458 eV Core-core repulsion = 15805.036610 eV Total energy + Delta-G solvation = -2927.011847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47008 -38.82550 -38.37391 -36.71777 -34.83076 -33.84964 -29.67188 -28.03515 -27.64949 -26.99105 -23.87662 -23.16439 -21.47909 -21.28971 -20.94830 -18.68946 -17.96810 -17.66968 -17.33632 -16.96690 -16.40570 -15.85133 -15.25247 -14.97120 -14.89169 -14.71751 -14.14865 -13.77481 -13.68420 -13.54028 -13.28890 -13.00091 -12.66796 -12.42849 -12.33709 -12.22637 -11.99773 -11.96289 -11.87131 -11.78651 -11.46016 -11.43296 -11.09007 -11.01567 -10.69711 -10.63750 -10.41521 -8.34714 -6.37643 1.27563 1.36434 1.37762 1.50399 1.82956 2.32513 2.95912 3.01395 3.68078 3.73037 4.03563 4.04895 4.08181 4.12850 4.18983 4.23636 4.39358 4.42309 4.57882 4.70996 4.74979 4.80320 4.83027 4.83797 4.89463 4.93112 4.94291 5.10153 5.11112 5.16625 5.24905 5.29236 5.34914 5.43738 5.50356 5.61395 5.68011 5.73584 6.24107 6.65439 6.82072 7.27836 8.82156 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.057260 B = 0.003443 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.882236 B = 8130.962712 C = 8339.884809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.038 3.962 3 C -0.144 4.144 4 C -0.525 4.525 5 H 0.030 0.970 6 C 0.022 3.978 7 N -0.943 5.943 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.310 1.310 11 H -0.208 1.208 12 C 0.105 3.895 13 O -0.352 6.352 14 C 0.448 3.552 15 O -0.553 6.553 16 C -0.104 4.104 17 C -0.102 4.102 18 C -0.080 4.080 19 C -0.166 4.166 20 C -0.187 4.187 21 C -0.177 4.177 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.267 0.733 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 6.983 24.477 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.037 3.963 3 C -0.201 4.201 4 C -0.563 4.563 5 H 0.048 0.952 6 C -0.176 4.176 7 N -0.581 5.581 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.240 1.240 11 H -0.132 1.132 12 C 0.031 3.969 13 O -0.268 6.268 14 C 0.293 3.707 15 O -0.444 6.444 16 C -0.141 4.141 17 C -0.139 4.139 18 C -0.118 4.118 19 C -0.184 4.184 20 C -0.224 4.224 21 C -0.214 4.214 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.040 6.659 24.276 25.495 hybrid contribution 0.426 -0.271 -1.022 1.140 sum -3.614 6.388 23.255 24.385 Atomic orbital electron populations 1.22159 0.95905 1.00540 1.00851 1.18528 0.94233 0.93394 0.90163 1.22236 1.00673 0.96763 1.00415 1.20955 1.33579 1.11329 0.90439 0.95194 1.25801 0.95136 1.01677 0.95027 1.70091 1.50310 1.38281 0.99461 0.86322 0.79610 0.79831 0.76991 1.20530 1.23951 1.13223 1.22907 0.97630 0.94931 0.81448 1.86473 1.69461 1.55754 1.15121 1.24826 0.76687 0.82270 0.86897 1.90635 1.37528 1.27737 1.88537 1.21575 1.04886 1.01807 0.85878 1.21355 1.00872 0.99171 0.92539 1.21128 1.01027 0.99010 0.90591 1.22368 1.00391 1.03936 0.91684 1.23131 0.98023 0.97136 1.04117 1.23050 1.03539 0.97956 0.96884 0.91714 0.93507 0.94184 0.93505 0.94585 0.90800 0.92395 0.93189 0.93421 0.85208 0.85365 0.92504 0.92334 0.90051 0.90425 0.88633 0.88238 0.88984 0.88561 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 7.58 71.98 0.55 -5.11 16 2 C 0.04 1.70 0.58 -52.93 -0.03 1.67 16 3 C -0.14 -5.84 7.55 71.98 0.54 -5.30 16 4 C -0.53 -29.73 8.62 25.60 0.22 -29.51 16 5 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 6 C 0.02 1.24 5.32 84.65 0.45 1.69 16 7 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 8 Si 0.94 43.58 22.79 68.60 1.56 45.14 16 9 H -0.28 -12.50 7.10 99.48 0.71 -11.79 16 10 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.21 -8.37 4.65 99.48 0.46 -7.91 16 12 C 0.10 4.42 4.25 71.98 0.31 4.73 16 13 O -0.35 -12.17 9.06 -51.45 -0.47 -12.64 16 14 C 0.45 13.79 7.96 71.24 0.57 14.36 16 15 O -0.55 -21.20 15.73 21.98 0.35 -20.85 16 16 C -0.10 -1.91 5.81 29.85 0.17 -1.74 16 17 C -0.10 -1.85 4.46 30.59 0.14 -1.71 16 18 C -0.08 -1.03 5.50 30.59 0.17 -0.87 16 19 C -0.17 -2.34 5.73 -10.80 -0.06 -2.41 16 20 C -0.19 -2.42 10.18 30.62 0.31 -2.11 16 21 C -0.18 -2.09 10.25 30.61 0.31 -1.77 16 22 H 0.06 2.25 7.94 -2.39 -0.02 2.23 16 23 H 0.05 1.98 4.30 -2.39 -0.01 1.97 16 24 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 25 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.04 1.49 2.25 -2.39 -0.01 1.48 16 27 H 0.07 2.51 7.68 -2.38 -0.02 2.49 16 28 H 0.27 15.62 8.31 -92.72 -0.77 14.85 16 29 H 0.05 2.20 8.13 -2.39 -0.02 2.18 16 30 H 0.05 2.13 8.13 -2.39 -0.02 2.11 16 31 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.21 8.10 -2.39 -0.02 1.20 16 34 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.84 7.88 -2.39 -0.02 0.83 16 37 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 38 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -68.58 324.22 6.13 -62.46 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.74 Total: 12.48 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.64 Total: -28.08 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.30 Total: -58.52 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.12 Total: -33.49 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.56 Total: 45.14 kcal Total: -68.58 6.13 -62.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.868 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds