Wall clock time and date at job start Mon Mar 30 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46846 * 2 1 4 4 C 1.53000 * 109.47208 * 239.99409 * 2 1 3 5 5 C 1.52996 * 109.46880 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47089 * 60.00486 * 5 4 2 7 7 H 1.09001 * 109.47466 * 59.99852 * 6 5 4 8 8 O 1.45206 * 109.47200 * 179.97438 * 6 5 4 9 9 C 1.34224 * 117.00077 * 269.99945 * 8 6 5 10 10 O 1.20833 * 120.00103 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00302 * 180.02562 * 9 8 6 12 12 C 1.52999 * 109.47581 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47581 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99778 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00242 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99823 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00194 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46894 * 59.99975 * 17 15 13 19 19 H 1.48495 * 109.47369 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46953 * 300.00310 * 17 15 13 21 21 C 1.53005 * 109.47174 * 299.99636 * 6 5 4 22 22 C 1.52997 * 109.46625 * 59.99854 * 21 6 5 23 23 H 1.09010 * 109.46766 * 180.02562 * 22 21 6 24 24 C 1.52995 * 109.47139 * 60.00601 * 22 21 6 25 25 H 1.09001 * 109.46758 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47040 * 300.00486 * 1 2 3 27 27 H 1.08998 * 109.46698 * 60.00958 * 1 2 3 28 28 H 1.09001 * 109.46885 * 60.00014 * 4 2 1 29 29 H 1.09001 * 109.47347 * 299.99744 * 4 2 1 30 30 H 1.09004 * 109.47584 * 300.00100 * 5 4 2 31 31 H 1.08997 * 109.47205 * 180.02562 * 5 4 2 32 32 H 1.09009 * 109.46972 * 299.99362 * 11 9 8 33 33 H 1.08995 * 109.47473 * 59.99636 * 11 9 8 34 34 H 1.09005 * 109.46903 * 300.00018 * 12 11 9 35 35 H 1.09000 * 109.47608 * 59.99121 * 12 11 9 36 36 H 0.97002 * 119.99857 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47197 * 180.02562 * 21 6 5 38 38 H 1.09001 * 109.47101 * 300.00440 * 21 6 5 39 39 H 1.09002 * 109.47427 * 299.99269 * 24 22 21 40 40 H 1.08998 * 109.47583 * 59.99781 * 24 22 21 41 41 H 1.09002 * 109.47196 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2494 6 6 4.0805 -1.4416 -0.0001 7 1 3.7176 -2.4694 0.0002 8 8 5.5326 -1.4416 -0.0007 9 6 6.1418 -2.4775 -0.5985 10 8 5.4835 -3.3555 -1.1043 11 6 7.6466 -2.5461 -0.6380 12 6 8.0803 -3.8166 -1.3720 13 6 9.5851 -3.8855 -1.4109 14 1 10.1735 -3.1014 -0.9578 15 6 10.2109 -4.9496 -2.0249 16 7 9.4944 -5.9048 -2.5762 17 14 12.0763 -5.0347 -2.0738 18 1 12.6072 -5.0578 -0.6871 19 1 12.4972 -6.2679 -2.7861 20 1 12.6075 -3.8457 -2.7874 21 6 3.5705 -0.7203 1.2491 22 6 2.0405 -0.7208 1.2493 23 1 1.6771 -0.2065 2.1391 24 6 1.5311 -2.1635 1.2497 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.6767 -0.2076 -2.1392 29 1 1.6768 -1.7491 -1.2491 30 1 3.9331 0.3070 -1.2497 31 1 3.9334 -1.2343 -2.1395 32 1 8.0365 -1.6733 -1.1619 33 1 8.0364 -2.5631 0.3798 34 1 7.6903 -4.6896 -0.8485 35 1 7.6905 -3.7993 -2.3897 36 1 9.9346 -6.6533 -3.0085 37 1 3.9345 -1.2336 2.1391 38 1 3.9334 0.3075 1.2488 39 1 1.8944 -2.6774 0.3598 40 1 1.8947 -2.6770 2.1397 41 1 0.4411 -2.1639 1.2503 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813087176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:44 Heat of formation + Delta-G solvation = -131.204539 kcal Electronic energy + Delta-G solvation = -19188.401860 eV Core-core repulsion = 16259.660776 eV Total energy + Delta-G solvation = -2928.741084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41652 -38.93813 -35.95741 -33.55953 -32.14437 -31.93184 -30.99777 -27.70600 -26.28493 -25.36073 -22.64845 -22.41196 -21.12776 -19.74790 -18.61297 -17.37794 -16.57036 -15.98488 -15.63532 -15.01920 -14.53025 -14.41096 -14.20616 -13.99670 -13.74616 -12.92423 -12.80771 -12.62199 -12.34214 -12.21581 -12.11883 -11.74625 -11.63713 -11.23033 -11.16999 -10.94600 -10.89345 -10.71886 -10.63739 -10.60191 -10.14952 -10.02518 -9.90817 -9.80116 -9.48072 -9.17024 -8.36178 -6.00122 -4.05024 2.89011 3.16267 3.33692 3.38260 3.40646 4.44052 4.45163 4.47878 4.61596 4.91670 4.95181 5.10542 5.18958 5.19456 5.27389 5.35087 5.40216 5.42656 5.45450 5.62148 5.68044 5.74734 5.81469 5.83346 5.90818 5.99969 6.05611 6.07281 6.14791 6.15484 6.21984 6.25598 6.37481 6.73208 7.03645 7.67909 7.75653 7.99750 8.29442 8.47422 9.02010 9.58861 11.10878 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.055647 B = 0.003583 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.053566 B = 7812.191723 C = 7876.704059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.084 3.916 7 H 0.085 0.915 8 O -0.363 6.363 9 C 0.455 3.545 10 O -0.507 6.507 11 C -0.104 4.104 12 C 0.034 3.966 13 C -0.529 4.529 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.110 4.110 22 C -0.081 4.081 23 H 0.075 0.925 24 C -0.159 4.159 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.682 12.618 6.931 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.173 4.173 6 C 0.029 3.971 7 H 0.103 0.897 8 O -0.281 6.281 9 C 0.299 3.701 10 O -0.393 6.393 11 C -0.142 4.142 12 C -0.003 4.003 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.148 4.148 22 C -0.100 4.100 23 H 0.094 0.906 24 C -0.216 4.216 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.904 12.178 6.678 21.878 hybrid contribution 0.946 -0.184 -0.146 0.974 sum -15.959 11.994 6.533 21.005 Atomic orbital electron populations 1.21883 0.95204 1.02039 1.01475 1.21202 0.95499 0.99492 0.94673 0.91038 1.21584 0.94483 1.01312 0.97588 1.21920 0.95960 1.01411 0.97991 1.22668 0.77771 1.01064 0.95581 0.89677 1.86604 1.22177 1.47262 1.72084 1.24738 0.93191 0.78281 0.73891 1.90614 1.67235 1.38654 1.42823 1.21751 0.83979 1.04396 1.04054 1.19002 0.95794 0.89750 0.95798 1.21129 0.91270 1.07307 1.37010 0.92378 1.25020 0.98421 0.95591 0.95291 1.69985 1.35400 1.10628 1.36811 0.86601 0.85441 0.77390 0.78224 1.20160 1.21256 1.20166 1.21621 0.94929 1.01407 0.96849 1.21092 0.94003 0.96788 0.98105 0.90615 1.22057 1.01098 0.95997 1.02449 0.92264 0.92781 0.92787 0.91551 0.91296 0.91153 0.91202 0.89073 0.89067 0.95632 0.95638 0.92806 0.91067 0.90890 0.91842 0.92605 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.09 -0.78 2.49 -90.62 -0.23 -1.00 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -1.14 4.93 -26.73 -0.13 -1.27 16 5 C -0.14 -1.72 5.56 -26.73 -0.15 -1.87 16 6 C 0.08 1.20 2.18 -26.73 -0.06 1.14 16 7 H 0.09 1.34 5.44 -51.93 -0.28 1.06 16 8 O -0.36 -6.25 9.88 -39.24 -0.39 -6.64 16 9 C 0.46 9.26 7.93 36.00 0.29 9.55 16 10 O -0.51 -11.76 15.20 -18.76 -0.29 -12.05 16 11 C -0.10 -2.19 5.75 -27.89 -0.16 -2.35 16 12 C 0.03 0.90 4.26 -27.89 -0.12 0.78 16 13 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.11 -1.22 5.11 -26.73 -0.14 -1.36 16 22 C -0.08 -0.74 2.72 -90.62 -0.25 -0.98 16 23 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 24 C -0.16 -1.49 8.15 37.16 0.30 -1.18 16 25 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -31.56 321.22 -7.83 -39.38 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.99 Total: -2.63 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.72 Total: -12.98 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.67 Total: -18.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.56 -7.83 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.820 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds