Wall clock time and date at job start Mon Mar 30 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47462 * 2 1 4 4 H 1.09002 * 109.47118 * 54.49980 * 3 2 1 5 5 C 1.50697 * 109.47518 * 174.50012 * 3 2 1 6 6 H 1.08001 * 120.00059 * 114.20566 * 5 3 2 7 7 C 1.37872 * 120.00271 * 294.20897 * 5 3 2 8 8 N 1.31504 * 120.00626 * 159.14711 * 7 5 3 9 9 Si 1.86806 * 119.99545 * 339.14531 * 7 5 3 10 10 H 1.48500 * 109.47373 * 269.99973 * 9 7 5 11 11 H 1.48497 * 109.47117 * 30.00472 * 9 7 5 12 12 H 1.48504 * 109.46796 * 150.00244 * 9 7 5 13 13 O 1.45206 * 109.47136 * 294.50568 * 3 2 1 14 14 C 1.34231 * 117.00364 * 89.99576 * 13 3 2 15 15 O 1.20826 * 119.99531 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00032 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.46921 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47210 * 299.99473 * 17 16 14 19 19 C 1.52997 * 109.47456 * 60.00114 * 17 16 14 20 20 C 1.53008 * 109.46988 * 180.02562 * 17 16 14 21 21 C 1.52997 * 117.49868 * 248.74528 * 20 17 16 22 22 C 1.53002 * 117.49844 * 180.08511 * 20 17 16 23 23 H 1.08996 * 109.47578 * 59.99883 * 1 2 3 24 24 H 1.08998 * 109.47416 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46909 * 299.99620 * 1 2 3 26 26 H 1.09008 * 109.46909 * 240.00380 * 2 1 3 27 27 H 1.08996 * 109.47664 * 120.00667 * 2 1 3 28 28 H 0.97008 * 119.99543 * 354.93020 * 8 7 5 29 29 H 1.08999 * 109.46967 * 299.99814 * 16 14 13 30 30 H 1.09003 * 109.47023 * 59.99891 * 16 14 13 31 31 H 1.09007 * 109.46784 * 60.00059 * 18 17 16 32 32 H 1.08995 * 109.47327 * 180.02562 * 18 17 16 33 33 H 1.09003 * 109.47346 * 300.00635 * 18 17 16 34 34 H 1.08996 * 109.46942 * 59.99555 * 19 17 16 35 35 H 1.08995 * 109.47189 * 179.97438 * 19 17 16 36 36 H 1.09002 * 109.46590 * 299.99508 * 19 17 16 37 37 H 1.09002 * 115.54866 * 34.41213 * 20 17 16 38 38 H 1.09002 * 117.49632 * 0.02562 * 21 20 17 39 39 H 1.09000 * 117.50126 * 145.01667 * 21 20 17 40 40 H 1.08997 * 117.49449 * 214.97723 * 22 20 17 41 41 H 1.09003 * 117.49708 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 0.8366 5 6 3.5408 1.4446 0.1362 6 1 4.1563 1.8015 -0.6764 7 6 4.1283 0.9911 1.2981 8 7 5.3850 0.6038 1.2918 9 14 3.1390 0.9267 2.8813 10 1 3.2806 2.2150 3.6063 11 1 1.7078 0.6933 2.5616 12 1 3.6423 -0.1795 3.7348 13 8 1.6660 2.0881 -1.2457 14 6 0.4830 2.7218 -1.2725 15 8 -0.2170 2.7362 -0.2878 16 6 0.0276 3.4144 -2.5310 17 6 -1.3425 4.0529 -2.2944 18 6 -2.3524 2.9677 -1.9155 19 6 -1.2404 5.0735 -1.1592 20 6 -1.8052 4.7555 -3.5725 21 6 -1.8706 6.2840 -3.5542 22 6 -3.1619 5.4621 -3.5386 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.8771 0.5674 0.4566 29 1 0.7468 4.1877 -2.8007 30 1 -0.0447 2.6873 -3.3400 31 1 -2.0229 2.4667 -1.0052 32 1 -3.3285 3.4226 -1.7474 33 1 -2.4251 2.2407 -2.7244 34 1 -0.5210 5.8465 -1.4292 35 1 -2.2164 5.5287 -0.9910 36 1 -0.9110 4.5725 -0.2489 37 1 -1.5109 4.2755 -4.5058 38 1 -1.5836 6.7890 -2.6319 39 1 -1.6197 6.8096 -4.4756 40 1 -3.7599 5.4472 -4.4497 41 1 -3.7250 5.4260 -2.6059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816039145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:21 Heat of formation + Delta-G solvation = -81.334586 kcal Electronic energy + Delta-G solvation = -20010.411118 eV Core-core repulsion = 17083.832558 eV Total energy + Delta-G solvation = -2926.578561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30955 -38.61563 -36.07617 -33.55471 -33.45901 -31.89207 -28.51593 -27.30708 -27.19828 -23.71314 -22.46362 -22.31301 -21.06449 -19.51391 -18.36805 -17.72644 -17.01325 -16.00799 -15.75638 -15.53601 -14.45609 -13.91474 -13.82925 -13.53159 -13.21542 -12.83982 -12.71594 -12.49569 -12.23785 -11.94777 -11.63496 -11.59882 -11.19530 -11.18620 -11.04219 -10.89032 -10.79716 -10.71594 -10.56103 -10.32623 -9.94661 -9.91611 -9.84360 -9.53400 -9.30693 -8.86358 -8.32610 -6.64544 -4.23386 2.91166 3.35934 3.39642 3.52413 3.55756 3.76462 4.38960 4.62809 4.70708 4.84368 4.97917 5.07581 5.15431 5.25895 5.44683 5.52390 5.69034 5.70327 5.76178 5.78884 5.86579 5.91476 5.96745 5.99679 6.04051 6.09639 6.12155 6.18606 6.31395 6.45909 6.57934 6.61896 6.65104 6.82009 6.86913 7.21496 7.48720 7.89420 8.25990 8.55769 8.87450 9.42651 10.76303 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036290 B = 0.005352 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.385439 B = 5230.528763 C = 5373.324602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.202 3.798 4 H 0.040 0.960 5 C -0.613 4.613 6 H 0.068 0.932 7 C 0.045 3.955 8 N -0.890 5.890 9 Si 1.031 2.969 10 H -0.281 1.281 11 H -0.270 1.270 12 H -0.281 1.281 13 O -0.347 6.347 14 C 0.452 3.548 15 O -0.512 6.512 16 C -0.107 4.107 17 C -0.017 4.017 18 C -0.152 4.152 19 C -0.158 4.158 20 C -0.142 4.142 21 C -0.185 4.185 22 C -0.177 4.177 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.273 0.727 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.014 6.765 -8.278 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.058 0.942 5 C -0.650 4.650 6 H 0.086 0.914 7 C -0.162 4.162 8 N -0.522 5.522 9 Si 0.857 3.143 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.206 1.206 13 O -0.263 6.263 14 C 0.296 3.704 15 O -0.403 6.403 16 C -0.145 4.145 17 C -0.017 4.017 18 C -0.209 4.209 19 C -0.215 4.215 20 C -0.160 4.160 21 C -0.222 4.222 22 C -0.214 4.214 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.039 6.386 -6.352 17.530 hybrid contribution -0.048 0.336 -1.743 1.776 sum -15.086 6.722 -8.095 18.393 Atomic orbital electron populations 1.21915 0.97392 0.99719 1.01567 1.22262 0.93764 0.99420 1.02076 1.20941 0.96270 0.88094 0.79866 0.94197 1.21904 0.88939 1.49241 1.04905 0.91407 1.25617 0.96910 0.92182 1.01501 1.70815 1.10464 1.39838 1.31120 0.84229 0.76253 0.77723 0.76062 1.20710 1.19470 1.20618 1.86539 1.34580 1.62429 1.42735 1.23376 0.80413 0.76688 0.89876 1.90466 1.54532 1.58492 1.36854 1.21422 0.97624 1.00537 0.94876 1.19802 0.93122 0.95428 0.93362 1.22104 0.97940 0.97853 1.02993 1.22244 1.01096 0.98279 0.99870 1.22332 1.00718 0.94103 0.98844 1.23162 1.01850 0.93827 1.03374 1.22912 0.90727 1.04911 1.02866 0.93805 0.94249 0.92587 0.92240 0.91293 0.91692 0.88289 0.88497 0.89506 0.93079 0.93475 0.92998 0.93081 0.89464 0.87909 0.88030 0.89251 0.89198 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.57 37.15 0.32 -2.58 16 2 C -0.14 -3.11 5.08 -26.73 -0.14 -3.25 16 3 C 0.20 5.05 1.79 -27.89 -0.05 5.00 16 4 H 0.04 1.04 5.56 -51.93 -0.29 0.75 16 5 C -0.61 -17.49 9.13 -34.44 -0.31 -17.80 16 6 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 7 C 0.04 1.28 5.25 -17.83 -0.09 1.19 16 8 N -0.89 -26.79 13.69 55.43 0.76 -26.03 16 9 Si 1.03 24.91 26.34 -169.99 -4.48 20.44 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.13 5.89 56.52 0.33 -5.80 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 O -0.35 -7.93 9.81 -39.26 -0.39 -8.32 16 14 C 0.45 8.58 5.85 36.00 0.21 8.79 16 15 O -0.51 -10.24 8.50 -18.75 -0.16 -10.40 16 16 C -0.11 -1.51 4.86 -27.89 -0.14 -1.64 16 17 C -0.02 -0.21 0.62 -154.51 -0.10 -0.31 16 18 C -0.15 -1.97 8.02 37.16 0.30 -1.67 16 19 C -0.16 -2.08 6.78 37.16 0.25 -1.83 16 20 C -0.14 -1.47 5.14 -90.62 -0.47 -1.93 16 21 C -0.19 -1.75 9.57 -26.69 -0.26 -2.01 16 22 C -0.18 -1.64 9.38 -26.69 -0.25 -1.89 16 23 H 0.04 0.82 6.05 -51.93 -0.31 0.51 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.12 7.82 -51.92 -0.41 0.72 16 26 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.07 1.59 5.66 -51.93 -0.29 1.30 16 28 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.35 5.52 -51.93 -0.29 1.06 16 32 H 0.05 0.60 7.29 -51.93 -0.38 0.22 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.64 6.97 -51.93 -0.36 0.28 16 35 H 0.05 0.60 7.07 -51.93 -0.37 0.23 16 36 H 0.09 1.40 5.52 -51.93 -0.29 1.11 16 37 H 0.10 0.99 8.11 -51.93 -0.42 0.57 16 38 H 0.10 0.99 5.85 -51.93 -0.30 0.69 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.89 7.07 -51.93 -0.37 0.52 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -29.81 310.77 -6.98 -36.79 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.68 Total: 2.75 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -0.72 Total: -19.92 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.76 Total: -26.03 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.54 Total: -18.71 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.48 Total: 20.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.81 -6.98 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.544 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds