Wall clock time and date at job start Mon Mar 30 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53002 * 109.46963 * 239.99933 * 2 1 3 5 5 C 1.52997 * 109.47143 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47482 * 60.00181 * 5 4 2 7 7 H 1.09002 * 109.47103 * 59.99753 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46961 * 300.00361 * 6 5 4 10 10 H 1.09002 * 109.46716 * 299.99630 * 9 6 5 11 11 O 1.45207 * 109.47177 * 179.97438 * 9 6 5 12 12 C 1.34231 * 116.99842 * 149.99586 * 11 9 6 13 13 O 1.20821 * 120.00355 * 0.02562 * 12 11 9 14 14 C 1.50694 * 119.99804 * 179.97438 * 12 11 9 15 15 C 1.52998 * 109.47325 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47308 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99760 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99843 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47335 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47241 * 120.00232 * 20 18 16 23 23 H 1.48497 * 109.47175 * 240.00187 * 20 18 16 24 24 C 1.53000 * 109.46886 * 120.00434 * 2 1 3 25 25 H 1.08992 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46652 * 299.99911 * 1 2 3 27 27 H 1.09004 * 109.47086 * 59.99712 * 1 2 3 28 28 H 1.09004 * 109.46930 * 60.00259 * 4 2 1 29 29 H 1.09002 * 109.47067 * 300.00341 * 4 2 1 30 30 H 1.09002 * 109.47153 * 299.99965 * 5 4 2 31 31 H 1.09001 * 109.46832 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47153 * 59.99783 * 8 6 5 33 33 H 1.09001 * 109.46832 * 299.99974 * 8 6 5 34 34 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 35 35 H 1.09007 * 109.47234 * 300.00010 * 14 12 11 36 36 H 1.09004 * 109.47218 * 60.00233 * 14 12 11 37 37 H 1.09007 * 109.46685 * 299.99994 * 15 14 12 38 38 H 1.08997 * 109.47706 * 59.99608 * 15 14 12 39 39 H 0.96996 * 120.00056 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47194 * 299.99323 * 24 2 1 41 41 H 1.09002 * 109.47131 * 59.99984 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7219 -1.2490 6 6 4.0795 -1.4435 0.0001 7 1 3.7158 -2.4710 -0.0001 8 6 5.6095 -1.4446 0.0001 9 6 3.5695 -0.7223 1.2494 10 1 3.9332 0.3053 1.2496 11 8 4.0526 -1.4075 2.4350 12 6 4.2559 -0.6594 3.5308 13 8 4.0370 0.5284 3.5006 14 6 4.7560 -1.3013 4.7992 15 6 4.9006 -0.2357 5.8875 16 6 5.4013 -0.8776 7.1557 17 1 5.5966 -1.9394 7.1828 18 6 5.6102 -0.1092 8.2813 19 7 5.3720 1.1838 8.2484 20 14 6.2303 -0.9050 9.8535 21 1 6.4186 -2.3610 9.6305 22 1 7.5265 -0.2923 10.2405 23 1 5.2394 -0.6941 10.9392 24 6 2.0399 -0.7214 1.2492 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6766 -0.2074 -2.1393 29 1 1.6766 -1.7489 -1.2493 30 1 3.9337 0.3057 -1.2488 31 1 3.9332 -1.2353 -2.1392 32 1 5.9736 -0.4172 0.0001 33 1 5.9724 -1.9587 -0.8899 34 1 5.9725 -1.9583 0.8903 35 1 4.0458 -2.0607 5.1267 36 1 5.7247 -1.7656 4.6139 37 1 5.6106 0.5238 5.5602 38 1 3.9318 0.2283 6.0727 39 1 5.5186 1.7242 9.0403 40 1 1.6767 -0.2075 2.1392 41 1 1.6766 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816226868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:07 Heat of formation + Delta-G solvation = -136.707163 kcal Electronic energy + Delta-G solvation = -19236.208040 eV Core-core repulsion = 16307.228344 eV Total energy + Delta-G solvation = -2928.979696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34918 -38.54450 -35.80326 -33.77102 -33.55819 -31.20951 -30.15318 -28.66360 -26.05814 -24.43179 -23.24654 -21.78787 -20.68041 -20.07565 -19.55054 -17.28759 -16.34507 -15.84840 -15.60557 -15.01974 -14.50986 -14.45314 -14.23228 -13.97560 -13.48498 -12.90426 -12.80314 -12.54315 -12.39203 -12.22838 -11.91044 -11.86291 -11.57009 -11.23166 -11.04225 -10.97379 -10.84392 -10.81782 -10.62910 -10.57979 -10.37432 -10.04220 -9.90623 -9.80210 -9.48105 -9.14376 -8.37020 -6.00593 -4.05306 2.89596 3.15999 3.31360 3.38823 3.42673 4.44297 4.46151 4.52347 4.68730 4.84799 4.86943 5.12539 5.23583 5.29349 5.33960 5.34912 5.42332 5.47235 5.58859 5.63715 5.70196 5.77085 5.80346 5.86243 5.92518 6.00585 6.04984 6.13562 6.15165 6.20831 6.22373 6.28164 6.33536 6.73392 7.04165 7.68280 7.75399 7.99495 8.29385 8.47845 9.02191 9.58770 11.10502 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036591 B = 0.004011 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.025820 B = 6978.551759 C = 7409.460392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.086 4.086 7 H 0.079 0.921 8 C -0.149 4.149 9 C 0.091 3.909 10 H 0.081 0.919 11 O -0.360 6.360 12 C 0.455 3.545 13 O -0.506 6.506 14 C -0.104 4.104 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.130 4.130 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -5.467 -19.696 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.104 4.104 7 H 0.097 0.903 8 C -0.206 4.206 9 C 0.036 3.964 10 H 0.099 0.901 11 O -0.278 6.278 12 C 0.299 3.701 13 O -0.393 6.393 14 C -0.142 4.142 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.889 -4.935 -19.627 21.077 hybrid contribution 0.273 -0.177 0.912 0.968 sum -5.617 -5.112 -18.715 20.197 Atomic orbital electron populations 1.21808 0.94902 1.01840 1.01774 1.21082 0.95747 0.99789 0.94177 0.90946 1.21648 0.95359 1.00863 0.97500 1.21585 0.95561 1.00936 0.96912 1.21197 0.96360 1.00217 0.92658 0.90258 1.21816 0.94556 1.02054 1.02200 1.22625 0.93655 0.97264 0.82844 0.90067 1.86601 1.77401 1.43155 1.20632 1.24728 0.73822 0.86387 0.85192 1.90613 1.47738 1.17031 1.83913 1.21747 1.01671 1.01905 0.88832 1.19014 0.98505 0.92496 0.90406 1.21205 1.44900 0.94723 0.95734 0.92274 1.25022 0.95506 0.94808 0.98995 1.70004 1.48446 1.05040 1.29325 0.86495 0.78484 0.79516 0.83254 1.19642 1.20970 1.20966 1.21985 0.94572 1.01594 0.98629 0.92655 0.92472 0.92667 0.91788 0.91744 0.91673 0.91242 0.92796 0.92572 0.91679 0.89093 0.89099 0.95634 0.95635 0.92924 0.91152 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.97 16 2 C -0.09 -0.92 2.72 -90.62 -0.25 -1.16 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -1.00 5.20 -26.73 -0.14 -1.14 16 5 C -0.11 -1.01 5.20 -26.74 -0.14 -1.15 16 6 C -0.09 -0.95 2.47 -90.63 -0.22 -1.18 16 7 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 8 C -0.15 -1.65 9.05 37.16 0.34 -1.31 16 9 C 0.09 1.30 1.88 -26.75 -0.05 1.25 16 10 H 0.08 1.29 7.16 -51.93 -0.37 0.92 16 11 O -0.36 -6.10 9.21 -39.26 -0.36 -6.46 16 12 C 0.46 9.19 7.93 36.00 0.29 9.48 16 13 O -0.51 -11.74 15.20 -18.75 -0.28 -12.02 16 14 C -0.10 -2.18 5.75 -27.89 -0.16 -2.34 16 15 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 16 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.13 -1.67 4.84 -26.75 -0.13 -1.80 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.80 7.68 -51.93 -0.40 0.41 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -31.51 330.84 -8.09 -39.60 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -7.49 Total: -3.00 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.65 Total: -13.17 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.65 Total: -18.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.51 -8.09 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816226868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.103 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds