Wall clock time and date at job start Mon Mar 30 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53002 * 109.46963 * 239.99933 * 2 1 3 5 5 C 1.52997 * 109.47143 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47482 * 60.00181 * 5 4 2 7 7 H 1.09002 * 109.47103 * 59.99753 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46961 * 300.00361 * 6 5 4 10 10 H 1.09002 * 109.46716 * 299.99630 * 9 6 5 11 11 O 1.45207 * 109.47177 * 179.97438 * 9 6 5 12 12 C 1.34231 * 116.99842 * 149.99586 * 11 9 6 13 13 O 1.20821 * 120.00355 * 0.02562 * 12 11 9 14 14 C 1.50694 * 119.99804 * 179.97438 * 12 11 9 15 15 C 1.52998 * 109.47325 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47308 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99760 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99843 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00162 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47335 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47241 * 120.00232 * 20 18 16 23 23 H 1.48497 * 109.47175 * 240.00187 * 20 18 16 24 24 C 1.53000 * 109.46886 * 120.00434 * 2 1 3 25 25 H 1.08992 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46652 * 299.99911 * 1 2 3 27 27 H 1.09004 * 109.47086 * 59.99712 * 1 2 3 28 28 H 1.09004 * 109.46930 * 60.00259 * 4 2 1 29 29 H 1.09002 * 109.47067 * 300.00341 * 4 2 1 30 30 H 1.09002 * 109.47153 * 299.99965 * 5 4 2 31 31 H 1.09001 * 109.46832 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47153 * 59.99783 * 8 6 5 33 33 H 1.09001 * 109.46832 * 299.99974 * 8 6 5 34 34 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 35 35 H 1.09007 * 109.47234 * 300.00010 * 14 12 11 36 36 H 1.09004 * 109.47218 * 60.00233 * 14 12 11 37 37 H 1.09007 * 109.46685 * 299.99994 * 15 14 12 38 38 H 1.08997 * 109.47706 * 59.99608 * 15 14 12 39 39 H 0.96996 * 120.00056 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47194 * 299.99323 * 24 2 1 41 41 H 1.09002 * 109.47131 * 59.99984 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7219 -1.2490 6 6 4.0795 -1.4435 0.0001 7 1 3.7158 -2.4710 -0.0001 8 6 5.6095 -1.4446 0.0001 9 6 3.5695 -0.7223 1.2494 10 1 3.9332 0.3053 1.2496 11 8 4.0526 -1.4075 2.4350 12 6 4.2559 -0.6594 3.5308 13 8 4.0370 0.5284 3.5006 14 6 4.7560 -1.3013 4.7992 15 6 4.9006 -0.2357 5.8875 16 6 5.4013 -0.8776 7.1557 17 1 5.5966 -1.9394 7.1828 18 6 5.6102 -0.1092 8.2813 19 7 5.3720 1.1838 8.2484 20 14 6.2303 -0.9050 9.8535 21 1 6.4186 -2.3610 9.6305 22 1 7.5265 -0.2923 10.2405 23 1 5.2394 -0.6941 10.9392 24 6 2.0399 -0.7214 1.2492 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6766 -0.2074 -2.1393 29 1 1.6766 -1.7489 -1.2493 30 1 3.9337 0.3057 -1.2488 31 1 3.9332 -1.2353 -2.1392 32 1 5.9736 -0.4172 0.0001 33 1 5.9724 -1.9587 -0.8899 34 1 5.9725 -1.9583 0.8903 35 1 4.0458 -2.0607 5.1267 36 1 5.7247 -1.7656 4.6139 37 1 5.6106 0.5238 5.5602 38 1 3.9318 0.2283 6.0727 39 1 5.5186 1.7242 9.0403 40 1 1.6767 -0.2075 2.1392 41 1 1.6766 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816226868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:07 Heat of formation + Delta-G solvation = -153.193797 kcal Electronic energy + Delta-G solvation = -19236.922954 eV Core-core repulsion = 16307.228344 eV Total energy + Delta-G solvation = -2929.694610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76580 -39.70769 -37.24587 -35.66268 -34.66144 -33.18502 -31.19950 -29.52455 -28.04399 -25.41166 -24.60675 -23.30491 -21.66032 -21.39538 -20.78625 -19.06712 -18.15390 -17.35412 -17.11462 -16.48948 -16.01291 -15.55031 -15.22444 -15.11020 -14.62082 -14.36799 -14.30561 -13.77379 -13.71803 -13.29681 -13.22157 -12.96109 -12.83878 -12.72262 -12.59574 -12.48995 -12.04892 -11.99614 -11.80777 -11.76838 -11.67775 -11.59408 -11.38527 -11.34106 -11.09798 -10.87534 -10.60128 -8.21324 -6.35475 1.24713 1.42571 1.43819 1.57312 1.73758 2.42389 3.12492 3.52776 3.60517 3.74533 3.88119 3.99778 4.06501 4.26183 4.35157 4.38869 4.42620 4.45170 4.49776 4.65183 4.69419 4.77247 4.85735 4.87255 4.94757 4.97968 5.02472 5.07508 5.19323 5.26901 5.30598 5.33436 5.38553 5.43167 5.46987 5.52555 5.58969 5.78919 6.11716 6.79586 6.87081 7.35037 8.91708 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036591 B = 0.004011 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.025820 B = 6978.551759 C = 7409.460392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.109 4.109 6 C -0.080 4.080 7 H 0.090 0.910 8 C -0.150 4.150 9 C 0.083 3.917 10 H 0.057 0.943 11 O -0.350 6.350 12 C 0.463 3.537 13 O -0.546 6.546 14 C -0.095 4.095 15 C 0.039 3.961 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.128 4.128 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.114 0.886 36 H 0.114 0.886 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.039 0.961 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -7.903 -21.058 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.099 4.099 7 H 0.109 0.891 8 C -0.207 4.207 9 C 0.028 3.972 10 H 0.076 0.924 11 O -0.267 6.267 12 C 0.308 3.692 13 O -0.436 6.436 14 C -0.132 4.132 15 C 0.002 3.998 16 C -0.582 4.582 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.799 3.201 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.165 4.165 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.883 -7.406 -21.018 23.048 hybrid contribution 0.244 0.613 1.264 1.426 sum -5.639 -6.793 -19.754 21.637 Atomic orbital electron populations 1.21793 0.93768 1.02519 1.02003 1.21097 0.96697 0.99023 0.93878 0.92202 1.21639 0.94872 1.01425 0.96900 1.21608 0.95950 1.00630 0.96461 1.21260 0.96380 1.00580 0.91650 0.89132 1.21832 0.94546 1.01624 1.02683 1.23023 0.94777 0.96492 0.82870 0.92441 1.86559 1.76938 1.42588 1.20646 1.24490 0.73062 0.85734 0.85910 1.90606 1.49563 1.18718 1.84667 1.21511 1.03733 1.00313 0.87669 1.18788 0.95345 0.93176 0.92491 1.21672 1.44585 0.95684 0.96235 0.90433 1.26114 0.95529 0.95267 1.03269 1.70169 1.49775 1.07017 1.30661 0.85246 0.77686 0.79252 0.77906 1.17647 1.20537 1.20544 1.21989 0.93425 1.02220 0.98898 0.91725 0.93792 0.90945 0.89836 0.90612 0.92277 0.88680 0.93726 0.89921 0.93350 0.86801 0.86752 0.99311 0.99342 0.92728 0.94230 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.09 -1.73 2.72 -10.79 -0.03 -1.76 16 3 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -1.57 5.20 30.59 0.16 -1.42 16 5 C -0.11 -1.67 5.20 30.59 0.16 -1.51 16 6 C -0.08 -1.64 2.47 -10.80 -0.03 -1.67 16 7 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 8 C -0.15 -3.09 9.05 71.98 0.65 -2.44 16 9 C 0.08 2.37 1.88 30.58 0.06 2.43 16 10 H 0.06 1.93 7.16 -2.39 -0.02 1.91 16 11 O -0.35 -11.90 9.21 -51.43 -0.47 -12.38 16 12 C 0.46 19.25 7.93 71.23 0.56 19.82 16 13 O -0.55 -26.82 15.20 21.98 0.33 -26.49 16 14 C -0.10 -4.00 5.75 29.85 0.17 -3.82 16 15 C 0.04 2.19 4.26 29.85 0.13 2.32 16 16 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 17 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 18 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 19 N -0.94 -58.97 13.29 21.45 0.28 -58.68 16 20 Si 0.98 44.15 29.54 68.60 2.03 46.17 16 21 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 C -0.13 -3.27 4.84 30.58 0.15 -3.12 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.15 7.68 -2.38 -0.02 1.13 16 35 H 0.11 4.28 8.14 -2.38 -0.02 4.26 16 36 H 0.11 4.28 8.14 -2.38 -0.02 4.26 16 37 H -0.01 -0.72 8.10 -2.38 -0.02 -0.74 16 38 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.89 330.84 6.47 -64.41 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.96 Total: 10.34 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 3.34 Total: -23.38 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.28 Total: -58.68 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.14 Total: -38.86 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.89 6.47 -64.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816226868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.783 kcal (2) G-P(sol) polarization free energy of solvation -70.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds