Wall clock time and date at job start Mon Mar 30 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 5 5 C 1.53002 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46891 * 60.00410 * 5 4 2 7 7 H 1.09001 * 109.47372 * 59.99964 * 6 5 4 8 8 C 1.53001 * 109.47302 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47328 * 299.99597 * 6 5 4 10 10 H 1.09002 * 109.47398 * 180.02562 * 9 6 5 11 11 O 1.45200 * 109.47046 * 300.00387 * 9 6 5 12 12 C 1.34232 * 117.00067 * 209.99733 * 11 9 6 13 13 O 1.20827 * 119.99576 * 359.97438 * 12 11 9 14 14 C 1.50692 * 120.00115 * 180.02562 * 12 11 9 15 15 C 1.53008 * 109.47286 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.46783 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00933 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99405 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99881 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00273 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47200 * 89.99774 * 20 18 16 22 22 H 1.48502 * 109.47532 * 210.00043 * 20 18 16 23 23 H 1.48505 * 109.47064 * 330.00365 * 20 18 16 24 24 C 1.52997 * 109.47060 * 60.00126 * 9 6 5 25 25 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 27 27 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 28 28 H 1.09002 * 109.47045 * 59.99942 * 4 2 1 29 29 H 1.09001 * 109.47375 * 299.99867 * 4 2 1 30 30 H 1.08992 * 109.47056 * 300.00064 * 5 4 2 31 31 H 1.09004 * 109.47006 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47508 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.47437 * 300.00386 * 8 6 5 34 34 H 1.09001 * 109.47109 * 59.99598 * 8 6 5 35 35 H 1.09008 * 109.47416 * 300.00104 * 14 12 11 36 36 H 1.09000 * 109.47506 * 60.00144 * 14 12 11 37 37 H 1.08997 * 109.46501 * 300.00125 * 15 14 12 38 38 H 1.09000 * 109.46759 * 59.99651 * 15 14 12 39 39 H 0.97003 * 119.99923 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47533 * 59.99948 * 24 9 6 41 41 H 1.08996 * 109.47853 * 180.02562 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0804 -1.4416 -0.0002 7 1 3.7175 -2.4694 0.0000 8 6 5.6104 -1.4416 -0.0007 9 6 3.5705 -0.7204 1.2490 10 1 3.9345 -1.2337 2.1390 11 8 4.0540 0.6488 1.2487 12 6 4.2571 1.2236 2.4446 13 8 4.0377 0.6033 3.4581 14 6 4.7577 2.6428 2.5232 15 6 4.9032 3.0518 3.9904 16 6 5.4043 4.4708 4.0688 17 1 5.5992 5.0257 3.1630 18 6 5.6131 5.0612 5.2972 19 7 6.0500 6.2998 5.3658 20 14 5.2740 4.1024 6.8641 21 1 6.5041 3.3814 7.2793 22 1 4.8632 5.0405 7.9395 23 1 4.1851 3.1227 6.6191 24 6 2.0405 -0.7209 1.2493 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6766 -0.2075 -2.1392 29 1 1.6767 -1.7490 -1.2492 30 1 3.9329 0.3070 -1.2497 31 1 3.9334 -1.2342 -2.1397 32 1 5.9741 -1.9548 0.8895 33 1 5.9735 -1.9556 -0.8907 34 1 5.9738 -0.4139 -0.0012 35 1 5.7265 2.7143 2.0287 36 1 4.0479 3.3064 2.0293 37 1 3.9346 2.9802 4.4852 38 1 5.6132 2.3882 4.4838 39 1 6.1965 6.7152 6.2300 40 1 1.6774 -1.7486 1.2495 41 1 1.6770 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816226869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:10 Heat of formation + Delta-G solvation = -131.872097 kcal Electronic energy + Delta-G solvation = -19561.960995 eV Core-core repulsion = 16633.190963 eV Total energy + Delta-G solvation = -2928.770031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53067 -38.49984 -35.67264 -33.80232 -33.60082 -31.45494 -30.36122 -28.66633 -26.48924 -24.43543 -23.06202 -21.89269 -20.80828 -20.08147 -19.11501 -17.43720 -16.50744 -16.10876 -15.73115 -15.07989 -14.50997 -14.24248 -14.09147 -13.96954 -13.65780 -13.10581 -12.86693 -12.61565 -12.46604 -12.31907 -11.96012 -11.74635 -11.67593 -11.45773 -11.41843 -11.02042 -10.87251 -10.77259 -10.56350 -10.29969 -10.16270 -10.03531 -9.93721 -9.87701 -9.63717 -9.24979 -8.55154 -6.06806 -4.06445 2.76124 3.10947 3.34456 3.41398 3.50773 4.46608 4.46691 4.57117 4.60964 4.86380 4.90062 5.09282 5.27823 5.28174 5.30919 5.33443 5.44910 5.45325 5.58465 5.64112 5.68505 5.77692 5.79086 5.85946 5.90369 5.99493 6.01809 6.05873 6.08866 6.15910 6.25255 6.26501 6.42102 6.54840 6.90242 7.25362 7.32610 7.71965 8.29117 8.48283 8.95792 9.55233 11.05861 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.029480 B = 0.004744 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.555985 B = 5900.465351 C = 6153.524254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.085 4.085 7 H 0.082 0.918 8 C -0.150 4.150 9 C 0.091 3.909 10 H 0.081 0.919 11 O -0.351 6.351 12 C 0.456 3.544 13 O -0.514 6.514 14 C -0.096 4.096 15 C -0.001 4.001 16 C -0.526 4.526 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.262 1.262 24 C -0.130 4.130 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -16.419 -13.802 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.103 4.103 7 H 0.100 0.900 8 C -0.207 4.207 9 C 0.036 3.964 10 H 0.099 0.901 11 O -0.268 6.268 12 C 0.300 3.700 13 O -0.401 6.401 14 C -0.134 4.134 15 C -0.039 4.039 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.186 1.186 24 C -0.167 4.167 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.448 -16.492 -13.380 22.505 hybrid contribution -0.172 -0.515 1.045 1.178 sum -7.620 -17.007 -12.335 22.349 Atomic orbital electron populations 1.21831 0.95382 1.01464 1.01743 1.21090 0.95118 1.00568 0.94228 0.90315 1.21587 0.95581 1.00234 0.97554 1.21559 0.95305 1.01716 0.96502 1.21246 0.96354 0.98666 0.94027 0.89970 1.21824 0.94581 1.02859 1.01459 1.22635 0.93736 0.80996 0.99053 0.90114 1.86599 1.77123 1.28916 1.34201 1.24691 0.73653 0.90782 0.80914 1.90598 1.48223 1.64822 1.36460 1.21516 1.02382 0.86334 1.03130 1.19467 0.97848 0.97175 0.89404 1.21038 1.44760 0.96080 0.94536 0.90679 1.24950 0.94284 0.94723 0.99104 1.69907 1.45970 1.12762 1.25306 0.86813 0.79621 0.80175 0.83038 1.20168 1.21316 1.18618 1.21997 0.94418 1.01449 0.98871 0.92972 0.92676 0.92693 0.91964 0.92331 0.90738 0.92086 0.92834 0.92536 0.91638 0.88515 0.88486 0.95685 0.96130 0.92615 0.90751 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.09 -0.98 2.58 -90.62 -0.23 -1.21 16 3 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 4 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 5 C -0.11 -1.09 5.06 -26.73 -0.14 -1.22 16 6 C -0.08 -0.87 2.55 -90.62 -0.23 -1.10 16 7 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 8 C -0.15 -1.55 9.05 37.16 0.34 -1.21 16 9 C 0.09 1.19 2.18 -26.73 -0.06 1.13 16 10 H 0.08 1.17 7.16 -51.93 -0.37 0.80 16 11 O -0.35 -5.43 7.87 -39.26 -0.31 -5.74 16 12 C 0.46 8.51 7.93 36.00 0.29 8.80 16 13 O -0.51 -11.00 15.20 -18.75 -0.29 -11.29 16 14 C -0.10 -1.89 5.75 -27.88 -0.16 -2.05 16 15 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 16 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 20 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 24 C -0.13 -1.54 4.93 -26.73 -0.13 -1.67 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.76 7.68 -51.93 -0.40 0.37 16 35 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 36 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.02 0.64 7.15 -51.93 -0.37 0.27 16 38 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -31.29 325.16 -7.65 -38.95 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.41 Total: -3.38 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.65 Total: -14.12 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.77 Total: -26.96 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.59 Total: -17.03 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.29 -7.65 -38.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816226869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.927 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds