Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53002 * 109.46969 * 240.00701 * 2 1 3 5 5 C 1.52997 * 109.47092 * 299.99940 * 4 2 1 6 6 C 1.53006 * 109.47445 * 300.00075 * 5 4 2 7 7 H 1.09002 * 109.46589 * 300.00331 * 6 5 4 8 8 C 1.52997 * 109.47445 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46711 * 59.99695 * 6 5 4 10 10 H 1.09002 * 109.47070 * 60.00376 * 9 6 5 11 11 O 1.45198 * 109.46767 * 180.02562 * 9 6 5 12 12 C 1.34232 * 116.99973 * 210.00232 * 11 9 6 13 13 O 1.20828 * 120.00187 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00321 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.47405 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.46880 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00573 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99511 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99902 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47043 * 59.99890 * 20 18 16 22 22 H 1.48500 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47212 * 300.00317 * 20 18 16 24 24 C 1.53000 * 109.47233 * 300.00001 * 9 6 5 25 25 H 1.08996 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46997 * 299.99663 * 1 2 3 27 27 H 1.09000 * 109.47054 * 59.99396 * 1 2 3 28 28 H 1.09002 * 109.47067 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47312 * 60.00061 * 4 2 1 30 30 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.47497 * 59.99850 * 5 4 2 32 32 H 1.09002 * 109.47045 * 300.00058 * 8 6 5 33 33 H 1.08998 * 109.47171 * 59.99399 * 8 6 5 34 34 H 1.09000 * 109.47140 * 180.02562 * 8 6 5 35 35 H 1.09006 * 109.47040 * 299.99732 * 14 12 11 36 36 H 1.09005 * 109.47258 * 59.99528 * 14 12 11 37 37 H 1.08998 * 109.46792 * 299.99317 * 15 14 12 38 38 H 1.08997 * 109.46982 * 59.99739 * 15 14 12 39 39 H 0.97005 * 119.99851 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47194 * 179.97438 * 24 9 6 41 41 H 1.08992 * 109.47399 * 300.00166 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.5299 -2.1636 -1.2495 6 6 2.0399 -2.8851 -0.0003 7 1 3.1299 -2.8850 -0.0004 8 6 1.5305 -4.3277 -0.0008 9 6 1.5300 -2.1639 1.2490 10 1 0.4399 -2.1638 1.2490 11 8 2.0144 -2.8482 2.4344 12 6 1.2412 -2.7904 3.5301 13 8 0.1945 -2.1876 3.4999 14 6 1.6791 -3.4764 4.7984 15 6 0.6261 -3.2572 5.8866 16 6 1.0639 -3.9438 7.1547 17 1 1.9993 -4.4829 7.1817 18 6 0.2700 -3.8836 8.2805 19 7 -0.8692 -3.2276 8.2474 20 14 0.8122 -4.7353 9.8522 21 1 2.1111 -4.1705 10.2984 22 1 -0.2092 -4.5214 10.9087 23 1 0.9661 -6.1904 9.5990 24 6 2.0401 -0.7214 1.2491 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1299 -0.7215 -1.2491 29 1 1.6766 -0.2072 -2.1393 30 1 1.8936 -2.6775 -2.1393 31 1 0.4399 -2.1636 -1.2494 32 1 0.4404 -4.3281 -0.0010 33 1 1.8940 -4.8412 -0.8909 34 1 1.8934 -4.8415 0.8893 35 1 1.7936 -4.5445 4.6130 36 1 2.6319 -3.0604 5.1262 37 1 0.5122 -2.1892 6.0721 38 1 -0.3267 -3.6729 5.5591 39 1 -1.4279 -3.1856 9.0394 40 1 1.6764 -0.2075 2.1389 41 1 3.1300 -0.7214 1.2491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816226870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = -132.208614 kcal Electronic energy + Delta-G solvation = -19443.818810 eV Core-core repulsion = 16515.034186 eV Total energy + Delta-G solvation = -2928.784624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45078 -38.69917 -35.79716 -33.55449 -33.45166 -31.20732 -30.16111 -28.15602 -26.09948 -25.31212 -23.23162 -21.76028 -21.05299 -19.69359 -18.86736 -17.36810 -16.55165 -15.78709 -15.68836 -14.76972 -14.54747 -14.46632 -14.26154 -13.90495 -13.67821 -13.12333 -12.72293 -12.53197 -12.22439 -12.12632 -12.08295 -11.65170 -11.58591 -11.21435 -11.01509 -10.95040 -10.93548 -10.80256 -10.66458 -10.53461 -10.21195 -10.02899 -9.87805 -9.75162 -9.47055 -9.16872 -8.36082 -6.00040 -4.04908 2.90240 3.17444 3.33712 3.38336 3.40717 4.44872 4.47175 4.50874 4.70997 4.91924 4.94604 5.14354 5.18552 5.21794 5.32315 5.35236 5.43954 5.49651 5.62766 5.66111 5.74918 5.79413 5.85394 5.90454 5.97733 5.98321 6.08821 6.13705 6.15492 6.21350 6.28008 6.28738 6.36664 6.73829 7.04918 7.67991 7.75831 7.99813 8.29845 8.48464 9.02107 9.58988 11.10944 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040760 B = 0.004091 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.786812 B = 6842.224204 C = 7168.484568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.086 4.086 7 H 0.079 0.921 8 C -0.149 4.149 9 C 0.089 3.911 10 H 0.085 0.915 11 O -0.361 6.361 12 C 0.455 3.545 13 O -0.506 6.506 14 C -0.104 4.104 15 C 0.034 3.966 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.131 4.131 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 3.207 -19.668 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.104 4.104 7 H 0.097 0.903 8 C -0.206 4.206 9 C 0.034 3.966 10 H 0.103 0.897 11 O -0.279 6.279 12 C 0.298 3.702 13 O -0.393 6.393 14 C -0.142 4.142 15 C -0.003 4.003 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.169 4.169 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.885 3.455 -19.595 20.749 hybrid contribution 0.130 -0.314 0.907 0.968 sum 6.015 3.141 -18.688 19.881 Atomic orbital electron populations 1.21967 0.95028 1.02371 1.01753 1.21053 0.96226 0.99138 0.94141 0.90859 1.21616 1.00695 0.95560 0.97549 1.21634 1.01363 0.95315 0.96847 1.21200 1.01290 0.95245 0.92708 0.90301 1.21815 1.01117 0.95492 1.02204 1.22693 1.00069 0.91002 0.82787 0.89661 1.86594 1.50999 1.69593 1.20682 1.24723 0.82107 0.78133 0.85191 1.90613 1.24157 1.40573 1.83911 1.21748 1.03409 1.00155 0.88862 1.18998 0.92688 0.98267 0.90365 1.21131 1.06109 1.33710 0.95778 0.92390 1.25015 0.94895 0.95395 0.98963 1.69984 1.11795 1.41523 1.29515 0.86610 0.78307 0.80031 0.82754 1.20168 1.21253 1.20159 1.21963 1.01337 0.94920 0.98683 0.92085 0.92298 0.92796 0.91793 0.91776 0.91362 0.91344 0.92830 0.92568 0.91678 0.89122 0.89112 0.95648 0.95649 0.92811 0.91143 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.50 37.16 0.32 -1.34 16 2 C -0.09 -0.89 3.19 -90.62 -0.29 -1.18 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.00 5.45 -26.73 -0.15 -1.15 16 5 C -0.11 -1.03 4.93 -26.73 -0.13 -1.16 16 6 C -0.09 -0.96 2.47 -90.62 -0.22 -1.18 16 7 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 8 C -0.15 -1.65 9.05 37.16 0.34 -1.32 16 9 C 0.09 1.27 1.61 -26.73 -0.04 1.23 16 10 H 0.09 1.35 5.44 -51.93 -0.28 1.07 16 11 O -0.36 -6.12 9.21 -39.26 -0.36 -6.48 16 12 C 0.45 9.18 7.93 36.00 0.29 9.46 16 13 O -0.51 -11.67 15.20 -18.75 -0.29 -11.95 16 14 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 15 C 0.03 0.91 4.26 -27.88 -0.12 0.79 16 16 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.13 -1.68 5.09 -26.73 -0.14 -1.82 16 25 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 35 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -31.41 323.81 -7.92 -39.33 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.14 Total: -2.21 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.72 Total: -13.65 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.65 Total: -18.43 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.41 -7.92 -39.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816226870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.882 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds