Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53002 * 109.46969 * 240.00701 * 2 1 3 5 5 C 1.52997 * 109.47092 * 299.99940 * 4 2 1 6 6 C 1.53006 * 109.47445 * 300.00075 * 5 4 2 7 7 H 1.09002 * 109.46589 * 300.00331 * 6 5 4 8 8 C 1.52997 * 109.47445 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46711 * 59.99695 * 6 5 4 10 10 H 1.09002 * 109.47070 * 60.00376 * 9 6 5 11 11 O 1.45198 * 109.46767 * 180.02562 * 9 6 5 12 12 C 1.34232 * 116.99973 * 210.00232 * 11 9 6 13 13 O 1.20828 * 120.00187 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.00321 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.47405 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.46880 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00573 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99511 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99902 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47043 * 59.99890 * 20 18 16 22 22 H 1.48500 * 109.47192 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47212 * 300.00317 * 20 18 16 24 24 C 1.53000 * 109.47233 * 300.00001 * 9 6 5 25 25 H 1.08996 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46997 * 299.99663 * 1 2 3 27 27 H 1.09000 * 109.47054 * 59.99396 * 1 2 3 28 28 H 1.09002 * 109.47067 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47312 * 60.00061 * 4 2 1 30 30 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 31 31 H 1.09002 * 109.47497 * 59.99850 * 5 4 2 32 32 H 1.09002 * 109.47045 * 300.00058 * 8 6 5 33 33 H 1.08998 * 109.47171 * 59.99399 * 8 6 5 34 34 H 1.09000 * 109.47140 * 180.02562 * 8 6 5 35 35 H 1.09006 * 109.47040 * 299.99732 * 14 12 11 36 36 H 1.09005 * 109.47258 * 59.99528 * 14 12 11 37 37 H 1.08998 * 109.46792 * 299.99317 * 15 14 12 38 38 H 1.08997 * 109.46982 * 59.99739 * 15 14 12 39 39 H 0.97005 * 119.99851 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47194 * 179.97438 * 24 9 6 41 41 H 1.08992 * 109.47399 * 300.00166 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.5299 -2.1636 -1.2495 6 6 2.0399 -2.8851 -0.0003 7 1 3.1299 -2.8850 -0.0004 8 6 1.5305 -4.3277 -0.0008 9 6 1.5300 -2.1639 1.2490 10 1 0.4399 -2.1638 1.2490 11 8 2.0144 -2.8482 2.4344 12 6 1.2412 -2.7904 3.5301 13 8 0.1945 -2.1876 3.4999 14 6 1.6791 -3.4764 4.7984 15 6 0.6261 -3.2572 5.8866 16 6 1.0639 -3.9438 7.1547 17 1 1.9993 -4.4829 7.1817 18 6 0.2700 -3.8836 8.2805 19 7 -0.8692 -3.2276 8.2474 20 14 0.8122 -4.7353 9.8522 21 1 2.1111 -4.1705 10.2984 22 1 -0.2092 -4.5214 10.9087 23 1 0.9661 -6.1904 9.5990 24 6 2.0401 -0.7214 1.2491 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.1299 -0.7215 -1.2491 29 1 1.6766 -0.2072 -2.1393 30 1 1.8936 -2.6775 -2.1393 31 1 0.4399 -2.1636 -1.2494 32 1 0.4404 -4.3281 -0.0010 33 1 1.8940 -4.8412 -0.8909 34 1 1.8934 -4.8415 0.8893 35 1 1.7936 -4.5445 4.6130 36 1 2.6319 -3.0604 5.1262 37 1 0.5122 -2.1892 6.0721 38 1 -0.3267 -3.6729 5.5591 39 1 -1.4279 -3.1856 9.0394 40 1 1.6764 -0.2075 2.1389 41 1 3.1300 -0.7214 1.2491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816226870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = -148.841075 kcal Electronic energy + Delta-G solvation = -19444.540047 eV Core-core repulsion = 16515.034186 eV Total energy + Delta-G solvation = -2929.505862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81533 -39.89225 -37.25844 -35.65776 -34.35668 -33.18067 -31.20038 -29.07607 -28.03679 -26.28558 -24.69629 -23.26162 -22.00740 -21.34433 -19.79179 -19.07437 -18.27000 -17.31983 -17.24387 -16.50386 -15.86625 -15.52851 -15.34001 -14.98076 -14.72734 -14.50863 -14.25385 -14.05792 -13.65549 -13.31622 -13.11627 -12.91657 -12.84809 -12.73275 -12.55089 -12.47280 -12.02394 -11.93239 -11.92587 -11.80110 -11.74538 -11.57591 -11.37602 -11.17734 -11.04498 -10.80175 -10.58036 -8.20791 -6.35146 1.25877 1.42443 1.46997 1.54619 1.75627 2.42743 3.12761 3.53205 3.61885 3.75401 3.91932 4.05677 4.10407 4.26557 4.28151 4.33091 4.42475 4.43843 4.50715 4.61505 4.73164 4.77866 4.84963 4.88064 4.97472 4.97860 5.02104 5.11603 5.14705 5.24189 5.32301 5.34265 5.40111 5.43284 5.48329 5.52956 5.60857 5.78945 6.12011 6.79835 6.88023 7.35244 8.91753 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040760 B = 0.004091 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.786812 B = 6842.224204 C = 7168.484568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.086 0.914 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.081 4.081 7 H 0.089 0.911 8 C -0.150 4.150 9 C 0.081 3.919 10 H 0.064 0.936 11 O -0.352 6.352 12 C 0.462 3.538 13 O -0.544 6.544 14 C -0.095 4.095 15 C 0.040 3.960 16 C -0.547 4.547 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.262 1.262 24 C -0.130 4.130 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.114 0.886 36 H 0.113 0.887 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.039 0.961 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 2.421 -21.095 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 H 0.105 0.895 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.099 4.099 7 H 0.108 0.892 8 C -0.207 4.207 9 C 0.027 3.973 10 H 0.082 0.918 11 O -0.269 6.269 12 C 0.307 3.693 13 O -0.434 6.434 14 C -0.133 4.133 15 C 0.003 3.997 16 C -0.584 4.584 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.168 4.168 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.166 2.659 -21.052 22.736 hybrid contribution -0.593 -0.033 1.278 1.409 sum 7.573 2.626 -19.774 21.337 Atomic orbital electron populations 1.21970 0.95777 1.01656 1.01752 1.21084 0.95562 0.99821 0.93784 0.89544 1.21613 1.01393 0.94917 0.96972 1.21657 1.01119 0.95739 0.96338 1.21263 1.01805 0.95072 0.91779 0.89242 1.21831 1.00588 0.95634 1.02644 1.23083 0.99159 0.92344 0.82725 0.91834 1.86550 1.50020 1.69592 1.20728 1.24473 0.81592 0.77283 0.85903 1.90607 1.25873 1.42276 1.84653 1.21510 1.02121 1.01884 0.87743 1.18769 0.92978 0.95486 0.92445 1.21616 1.06825 1.33703 0.96288 0.90469 1.26109 0.94736 0.96011 1.03243 1.70157 1.13388 1.43255 1.30767 0.85355 0.78128 0.79221 0.77443 1.18699 1.21219 1.18668 1.21983 1.01955 0.93888 0.98999 0.93199 0.94496 0.90568 0.90595 0.89741 0.88884 0.91897 0.93736 0.89958 0.93393 0.86818 0.86861 0.99360 0.99327 0.92722 0.94223 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.50 71.98 0.61 -2.67 16 2 C -0.08 -1.60 3.19 -10.79 -0.03 -1.63 16 3 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 4 C -0.11 -1.54 5.45 30.59 0.17 -1.37 16 5 C -0.11 -1.69 4.93 30.60 0.15 -1.54 16 6 C -0.08 -1.65 2.47 -10.79 -0.03 -1.68 16 7 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 8 C -0.15 -3.10 9.05 71.98 0.65 -2.45 16 9 C 0.08 2.30 1.61 30.60 0.05 2.35 16 10 H 0.06 2.11 5.44 -2.39 -0.01 2.09 16 11 O -0.35 -11.96 9.21 -51.43 -0.47 -12.44 16 12 C 0.46 19.22 7.93 71.23 0.56 19.79 16 13 O -0.54 -26.63 15.20 21.96 0.33 -26.30 16 14 C -0.10 -4.02 5.75 29.85 0.17 -3.84 16 15 C 0.04 2.26 4.26 29.85 0.13 2.38 16 16 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 17 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 19 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 20 Si 0.98 44.12 29.54 68.60 2.03 46.15 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 C -0.13 -3.32 5.09 30.59 0.16 -3.16 16 25 H 0.05 1.16 4.81 -2.39 -0.01 1.15 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.05 6.43 -2.39 -0.02 1.03 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.14 7.68 -2.39 -0.02 1.13 16 35 H 0.11 4.27 8.14 -2.38 -0.02 4.25 16 36 H 0.11 4.27 8.14 -2.38 -0.02 4.25 16 37 H -0.01 -0.75 8.10 -2.39 -0.02 -0.77 16 38 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 39 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.82 323.81 6.43 -64.38 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.98 Total: 11.31 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.28 Total: -24.42 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.28 Total: -58.69 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.14 Total: -38.74 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.82 6.43 -64.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816226870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.458 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds