Wall clock time and date at job start Mon Mar 30 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47053 * 2 1 4 4 C 1.52993 * 109.47445 * 239.99807 * 2 1 3 5 5 C 1.52997 * 109.47445 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47383 * 60.00013 * 5 4 2 7 7 C 1.53003 * 109.47206 * 300.00386 * 6 5 4 8 8 H 1.08999 * 109.46842 * 300.00178 * 7 6 5 9 9 O 1.45194 * 109.47522 * 180.02562 * 7 6 5 10 10 C 1.34223 * 117.00550 * 89.99667 * 9 7 6 11 11 O 1.20824 * 119.99641 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00476 * 180.02562 * 10 9 7 13 13 C 1.52992 * 109.47592 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.53003 * 109.47065 * 119.99756 * 2 1 3 24 24 H 1.09001 * 109.47053 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47375 * 300.00113 * 1 2 3 26 26 H 1.08998 * 109.46910 * 60.00030 * 1 2 3 27 27 H 1.09005 * 109.46935 * 59.99837 * 4 2 1 28 28 H 1.09001 * 109.47153 * 300.00131 * 4 2 1 29 29 H 1.09001 * 109.47053 * 300.00192 * 5 4 2 30 30 H 1.09000 * 109.47375 * 180.02562 * 5 4 2 31 31 H 1.08999 * 109.47440 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.47080 * 59.99618 * 6 5 4 33 33 H 1.09002 * 109.47210 * 59.99729 * 12 10 9 34 34 H 1.09001 * 109.46665 * 299.99987 * 12 10 9 35 35 H 1.09002 * 109.47103 * 59.99616 * 13 12 10 36 36 H 1.08998 * 109.46862 * 300.00428 * 13 12 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46986 * 60.00203 * 23 2 1 41 41 H 1.09000 * 109.47131 * 300.00280 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2495 6 6 4.0806 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2490 8 1 3.9334 0.3075 1.2487 9 8 4.0556 -1.4039 2.4346 10 6 5.2350 -0.9997 2.9316 11 8 5.8420 -0.1039 2.3940 12 6 5.8024 -1.6631 4.1600 13 6 7.1442 -1.0190 4.5139 14 6 7.7198 -1.6921 5.7615 15 6 9.0419 -1.0580 6.1097 16 1 9.4322 -0.2549 5.5022 17 6 9.7525 -1.5024 7.2045 18 7 9.2769 -2.4800 7.9445 19 14 11.3908 -0.7159 7.6365 20 1 11.1904 0.7313 7.9024 21 1 11.9496 -1.3693 8.8473 22 1 12.3353 -0.8848 6.5030 23 6 2.0400 -0.7212 1.2493 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6767 -0.2074 -2.1392 28 1 1.6767 -1.7489 -1.2491 29 1 3.9330 0.3071 -1.2497 30 1 3.9334 -1.2341 -2.1396 31 1 5.1706 -1.4407 -0.0002 32 1 3.7176 -2.4693 0.0001 33 1 5.9492 -2.7253 3.9643 34 1 5.1096 -1.5394 4.9924 35 1 6.9969 0.0431 4.7098 36 1 7.8371 -1.1422 3.6816 37 1 7.8670 -2.7543 5.5661 38 1 7.0267 -1.5684 6.5936 39 1 9.7770 -2.7929 8.7145 40 1 1.6766 -1.7489 1.2493 41 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846767174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:03 Heat of formation + Delta-G solvation = -139.187735 kcal Electronic energy + Delta-G solvation = -18655.680004 eV Core-core repulsion = 15726.592743 eV Total energy + Delta-G solvation = -2929.087261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50591 -38.60607 -36.11590 -34.27876 -32.67227 -32.09333 -30.47540 -28.03615 -26.69865 -24.35232 -22.72032 -21.95463 -20.65049 -20.15104 -19.67010 -17.32805 -16.54578 -16.08983 -15.94049 -15.31181 -14.67755 -14.53265 -14.34480 -14.09287 -13.60693 -13.27587 -12.78818 -12.70514 -12.26360 -12.13906 -12.04056 -11.89428 -11.44955 -11.33297 -11.24743 -10.90233 -10.88625 -10.80446 -10.70586 -10.61182 -10.58134 -10.15201 -10.01325 -9.71589 -9.37506 -9.09066 -8.33172 -5.98762 -4.00693 2.54862 2.86389 3.35999 3.39618 3.43188 4.35446 4.41835 4.47709 4.53541 4.77378 4.83262 4.93873 5.10442 5.16604 5.25809 5.29979 5.34329 5.37231 5.44445 5.51525 5.64635 5.64743 5.69490 5.72951 5.80994 5.90985 5.92733 5.96892 6.02378 6.11876 6.20416 6.64043 6.70290 6.84215 7.09429 7.67807 7.79945 8.01040 8.09381 8.43963 9.05873 9.63278 11.12708 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.055106 B = 0.003128 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.990010 B = 8949.665230 C = 9144.099227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.136 4.136 7 C 0.087 3.913 8 H 0.082 0.918 9 O -0.359 6.359 10 C 0.459 3.541 11 O -0.509 6.509 12 C -0.112 4.112 13 C -0.099 4.099 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.110 4.110 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.526 2.023 -16.914 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.173 4.173 7 C 0.032 3.968 8 H 0.101 0.899 9 O -0.276 6.276 10 C 0.303 3.697 11 O -0.396 6.396 12 C -0.150 4.150 13 C -0.137 4.137 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.148 4.148 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.323 2.196 -16.945 24.331 hybrid contribution 0.975 0.432 0.254 1.096 sum -16.348 2.627 -16.691 23.510 Atomic orbital electron populations 1.21806 0.94647 1.02023 1.01836 1.21102 0.95822 0.99742 0.94186 0.90918 1.21656 0.95430 1.00914 0.97433 1.21479 0.95567 1.01048 0.97273 1.21936 1.01474 1.00176 0.93743 1.22680 0.94264 0.97145 0.82735 0.89949 1.86591 1.37530 1.60568 1.42946 1.24404 0.78409 0.81269 0.85632 1.90621 1.59288 1.29540 1.60162 1.21687 0.99835 1.01527 0.91946 1.21568 0.91675 0.99799 1.00665 1.19121 0.95607 0.95840 0.91013 1.21208 1.04677 1.18670 1.11323 0.92600 1.25017 0.98032 0.95114 0.96293 1.69951 1.38776 1.27394 1.17498 0.86638 0.83980 0.79531 0.77745 1.20215 1.21295 1.20222 1.21672 0.92589 1.02099 0.98403 0.92500 0.92492 0.92509 0.91717 0.91654 0.91653 0.91347 0.91240 0.90975 0.88168 0.88175 0.92483 0.92482 0.96372 0.96367 0.92942 0.90723 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.70 2.72 -90.62 -0.25 -0.95 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.86 5.20 -26.74 -0.14 -1.00 16 5 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 6 C -0.14 -1.49 5.56 -26.73 -0.15 -1.64 16 7 C 0.09 1.07 2.46 -26.70 -0.07 1.00 16 8 H 0.08 1.12 7.15 -51.93 -0.37 0.75 16 9 O -0.36 -5.32 9.88 -39.24 -0.39 -5.70 16 10 C 0.46 7.83 7.93 36.00 0.29 8.12 16 11 O -0.51 -9.98 15.20 -18.75 -0.28 -10.26 16 12 C -0.11 -1.93 5.81 -27.89 -0.16 -2.09 16 13 C -0.10 -2.13 4.44 -26.74 -0.12 -2.25 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.11 -1.06 4.87 -26.70 -0.13 -1.19 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -31.38 332.55 -8.56 -39.93 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -7.52 Total: -4.48 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.09 Total: -15.14 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.67 Total: -15.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.38 -8.56 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846767174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.254 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds