Wall clock time and date at job start Mon Mar 30 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09005 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47136 * 120.00089 * 2 1 3 5 5 C 1.53000 * 109.47242 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47208 * 300.00269 * 5 4 2 7 7 C 1.53005 * 109.47311 * 59.99323 * 6 5 4 8 8 H 1.09002 * 109.47062 * 179.97438 * 7 6 5 9 9 O 1.45199 * 109.46561 * 60.00546 * 7 6 5 10 10 C 1.34228 * 117.00382 * 89.99789 * 9 7 6 11 11 O 1.20826 * 120.00031 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00407 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47454 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47415 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47057 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00538 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99661 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.52996 * 109.47441 * 300.00127 * 7 6 5 24 24 H 1.09001 * 109.47012 * 300.00072 * 1 2 3 25 25 H 1.08998 * 109.46915 * 60.00029 * 1 2 3 26 26 H 1.09005 * 109.46900 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47219 * 59.99767 * 4 2 1 28 28 H 1.09002 * 109.46990 * 300.00371 * 4 2 1 29 29 H 1.08998 * 109.47021 * 179.97438 * 5 4 2 30 30 H 1.09005 * 109.46739 * 59.99945 * 5 4 2 31 31 H 1.09005 * 109.47006 * 299.99512 * 6 5 4 32 32 H 1.08996 * 109.47388 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46738 * 59.99924 * 12 10 9 34 34 H 1.08998 * 109.47308 * 300.00158 * 12 10 9 35 35 H 1.09002 * 109.47302 * 60.00157 * 13 12 10 36 36 H 1.08998 * 109.46899 * 300.00294 * 13 12 10 37 37 H 1.09002 * 109.46997 * 59.99676 * 14 13 12 38 38 H 1.09000 * 109.46625 * 300.00101 * 14 13 12 39 39 H 0.97001 * 119.99697 * 359.97438 * 18 17 15 40 40 H 1.09002 * 109.47081 * 179.97438 * 23 7 6 41 41 H 1.08998 * 109.47428 * 300.00052 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7218 1.2489 6 6 4.0796 -1.4433 -0.0003 7 6 3.5695 -0.7221 -1.2496 8 1 3.9329 -1.2359 -2.1396 9 8 4.0540 0.6466 -1.2499 10 6 5.2336 0.8755 -1.8481 11 8 5.8410 -0.0376 -2.3552 12 6 5.7999 2.2714 -1.8883 13 6 7.1421 2.2564 -2.6226 14 6 7.7173 3.6736 -2.6629 15 6 9.0390 3.6588 -3.3867 16 1 9.4299 2.7314 -3.7784 17 6 9.7493 4.8294 -3.5488 18 7 9.2731 5.9590 -3.0722 19 14 11.3879 4.8111 -4.4454 20 1 11.1615 5.0392 -5.8953 21 1 12.0454 3.4942 -4.2483 22 1 12.2597 5.8853 -3.9055 23 6 2.0395 -0.7216 -1.2493 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6767 -1.7489 1.2492 28 1 1.6767 -0.2074 2.1392 29 1 3.9334 -1.2353 2.1391 30 1 3.9337 0.3058 1.2487 31 1 3.7159 -2.4709 -0.0001 32 1 5.1695 -1.4434 -0.0008 33 1 5.9461 2.6336 -0.8707 34 1 5.1069 2.9297 -2.4122 35 1 6.9955 1.8944 -3.6403 36 1 7.8353 1.5980 -2.0991 37 1 7.8640 4.0352 -1.6451 38 1 7.0242 4.3322 -3.1862 39 1 8.4220 5.9685 -2.6070 40 1 1.6762 -0.2074 -2.1391 41 1 1.6758 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846767176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:08 Heat of formation + Delta-G solvation = -141.482864 kcal Electronic energy + Delta-G solvation = -18956.479550 eV Core-core repulsion = 16027.292764 eV Total energy + Delta-G solvation = -2929.186786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62941 -38.53879 -35.93136 -34.54416 -32.62040 -32.17154 -30.60231 -27.80282 -26.67120 -24.03061 -22.73680 -21.92006 -21.24957 -20.18110 -19.31147 -17.38021 -16.66825 -16.33326 -16.03972 -15.45130 -14.63756 -14.37995 -14.03747 -13.70820 -13.60169 -13.32983 -12.97107 -12.74722 -12.54897 -12.20074 -12.10465 -11.78686 -11.55580 -11.50325 -11.21402 -10.99064 -10.95036 -10.72124 -10.66129 -10.27595 -10.23024 -10.10305 -10.03153 -9.86428 -9.76247 -8.53731 -8.30201 -6.34341 -4.02944 2.48968 2.85771 3.46297 3.50051 3.66065 4.41349 4.43496 4.52727 4.57320 4.81646 4.90142 4.93578 5.14287 5.18775 5.24987 5.37344 5.40308 5.42694 5.48670 5.53656 5.54091 5.57898 5.68475 5.72482 5.80075 5.96479 5.99406 6.01569 6.05841 6.10818 6.28168 6.50014 6.62667 6.68360 6.92966 7.41247 7.52014 8.03765 8.24115 8.49894 8.91175 9.68862 11.06632 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.045178 B = 0.003427 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.626340 B = 8168.891378 C = 8340.379604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.081 0.919 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.135 4.135 7 C 0.087 3.913 8 H 0.082 0.918 9 O -0.352 6.352 10 C 0.459 3.541 11 O -0.509 6.509 12 C -0.113 4.113 13 C -0.092 4.092 14 C 0.008 3.992 15 C -0.601 4.601 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 1.072 2.928 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.284 1.284 23 C -0.109 4.109 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.518 -13.642 8.018 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.173 4.173 7 C 0.032 3.968 8 H 0.100 0.900 9 O -0.270 6.270 10 C 0.302 3.698 11 O -0.396 6.396 12 C -0.151 4.151 13 C -0.130 4.130 14 C -0.029 4.029 15 C -0.639 4.639 16 H 0.068 0.932 17 C -0.190 4.190 18 N -0.551 5.551 19 Si 0.900 3.100 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.210 1.210 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.102 -12.992 7.377 21.966 hybrid contribution -1.268 -1.179 0.449 1.789 sum -17.371 -14.172 7.826 23.745 Atomic orbital electron populations 1.21839 0.95297 1.01551 1.01761 1.21111 0.95120 1.00665 0.94198 0.90094 1.21590 0.95454 1.00335 0.97604 1.21481 0.95622 1.01504 0.97001 1.21935 1.01453 0.99325 0.94566 1.22656 0.94329 0.80688 0.99166 0.89959 1.86596 1.37193 1.31758 1.71430 1.24306 0.78607 0.92997 0.73842 1.90627 1.59316 1.46390 1.43298 1.21676 0.99776 0.89211 1.04430 1.21423 0.91652 1.00732 0.99179 1.19254 0.96344 0.90758 0.96580 1.22078 1.05631 0.96681 1.39531 0.93158 1.25869 1.03909 0.92294 0.96905 1.70763 1.21295 1.27558 1.35518 0.83505 0.75040 0.75400 0.76032 1.21451 1.21455 1.21000 1.21719 0.92378 1.01494 0.99024 0.92663 0.92654 0.92907 0.92221 0.91926 0.91989 0.91202 0.90554 0.91290 0.88297 0.88285 0.92310 0.92321 0.97285 0.97296 0.92122 0.91088 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.81 2.58 -90.61 -0.23 -1.04 16 3 H 0.08 0.83 7.68 -51.93 -0.40 0.44 16 4 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 5 C -0.12 -1.14 5.78 -26.73 -0.15 -1.30 16 6 C -0.14 -1.44 5.65 -26.73 -0.15 -1.59 16 7 C 0.09 1.03 2.75 -26.73 -0.07 0.95 16 8 H 0.08 1.07 7.15 -51.93 -0.37 0.70 16 9 O -0.35 -4.98 8.54 -39.25 -0.34 -5.31 16 10 C 0.46 7.67 7.93 36.00 0.29 7.95 16 11 O -0.51 -9.89 15.20 -18.75 -0.28 -10.17 16 12 C -0.11 -1.92 5.81 -27.89 -0.16 -2.08 16 13 C -0.09 -1.99 4.44 -26.73 -0.12 -2.11 16 14 C 0.01 0.19 4.28 -27.89 -0.12 0.08 16 15 C -0.60 -17.57 9.11 -34.44 -0.31 -17.89 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 18 N -0.91 -28.31 13.65 55.43 0.76 -27.55 16 19 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.11 -1.00 4.95 -26.73 -0.13 -1.14 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 37 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 38 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 39 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -32.12 329.15 -8.47 -40.59 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -7.41 Total: -3.63 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.07 Total: -19.65 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.76 Total: -27.55 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.62 Total: -15.49 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.12 -8.47 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846767176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.893 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds