Wall clock time and date at job start Mon Mar 30 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00373 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00166 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.20822 * 120.00226 * 119.99589 * 12 2 1 14 14 O 1.34230 * 119.99763 * 299.99723 * 12 2 1 15 15 C 1.45198 * 117.00173 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47372 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.46874 * 305.00177 * 16 15 14 18 18 C 1.53004 * 109.47036 * 64.99831 * 16 15 14 19 19 C 1.53000 * 109.46695 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47285 * 299.99861 * 19 18 16 21 21 C 1.52995 * 109.47220 * 60.00227 * 20 19 18 22 22 C 1.52997 * 109.47249 * 184.99879 * 16 15 14 23 23 H 1.09000 * 109.47426 * 299.99960 * 22 16 15 24 24 C 1.53004 * 109.47141 * 60.00016 * 22 16 15 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46662 * 300.00356 * 15 14 12 30 30 H 1.09003 * 109.47123 * 59.99643 * 15 14 12 31 31 H 1.08996 * 109.47018 * 299.99973 * 18 16 15 32 32 H 1.09000 * 109.47007 * 60.00427 * 18 16 15 33 33 H 1.09000 * 109.47179 * 60.00368 * 19 18 16 34 34 H 1.09005 * 109.46502 * 180.02562 * 19 18 16 35 35 H 1.08996 * 109.47325 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47426 * 300.00355 * 20 19 18 37 37 H 1.09008 * 109.47154 * 59.99783 * 21 20 19 38 38 H 1.08997 * 109.47560 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47007 * 59.99687 * 24 22 16 40 40 H 1.08996 * 109.47018 * 180.02562 * 24 22 16 41 41 H 1.09005 * 109.46763 * 299.99849 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 6 2.0324 -0.7105 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5897 16 6 1.7548 -0.3197 4.8835 17 1 2.0425 0.7316 4.8763 18 6 0.2325 -0.4312 4.9887 19 6 -0.2395 0.2360 6.2821 20 6 0.4070 -0.4611 7.4809 21 6 1.9293 -0.3497 7.3756 22 6 2.4013 -1.0173 6.0819 23 1 2.1136 -2.0687 6.0890 24 6 3.9236 -0.9059 5.9767 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 1.8625 -2.0132 3.5565 30 1 3.3163 -0.9861 3.5569 31 1 -0.2281 0.0658 4.1349 32 1 -0.0552 -1.4825 4.9958 33 1 0.0482 1.2873 6.2746 34 1 -1.3240 0.1561 6.3573 35 1 0.0705 0.0139 8.4023 36 1 0.1194 -1.5125 7.4884 37 1 2.2170 0.7017 7.3681 38 1 2.3899 -0.8459 8.2298 39 1 4.2113 0.1455 5.9695 40 1 4.3842 -1.4032 6.8302 41 1 4.2598 -1.3808 5.0549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:27 Heat of formation + Delta-G solvation = -132.114868 kcal Electronic energy + Delta-G solvation = -19418.626074 eV Core-core repulsion = 16489.845515 eV Total energy + Delta-G solvation = -2928.780559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79313 -38.75218 -35.60999 -33.84981 -32.92309 -31.61878 -30.48871 -27.06630 -25.49273 -25.17418 -23.05739 -21.70744 -20.91113 -19.93461 -19.50038 -16.65401 -16.05996 -15.85693 -15.48423 -14.98544 -14.60135 -14.32910 -14.21328 -13.85189 -13.47664 -12.80694 -12.65830 -12.38932 -12.18329 -11.90879 -11.69116 -11.56482 -11.48455 -11.06489 -11.03186 -10.94718 -10.74519 -10.67730 -10.49291 -10.31479 -10.13141 -10.10269 -10.00749 -9.74597 -9.04616 -9.00569 -8.43326 -6.08777 -4.13834 3.29703 3.36851 3.38317 3.43182 3.59435 4.42653 4.55857 4.60798 4.70530 4.99113 5.05702 5.24545 5.26736 5.31315 5.39909 5.42261 5.48017 5.59200 5.68355 5.72191 5.73567 5.85891 5.95717 6.00679 6.07160 6.12457 6.16566 6.22287 6.27735 6.42679 6.49204 6.69164 6.90239 6.91457 7.30635 7.47207 7.76687 7.97167 8.17164 8.90509 8.98013 9.51669 10.98717 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041260 B = 0.004362 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.456975 B = 6417.908962 C = 6890.738879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.520 6.520 14 O -0.365 6.365 15 C 0.065 3.935 16 C -0.079 4.079 17 H 0.080 0.920 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.111 4.111 22 C -0.085 4.085 23 H 0.071 0.929 24 C -0.154 4.154 25 H 0.095 0.905 26 H 0.023 0.977 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -0.473 18.409 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.037 3.963 3 H 0.081 0.919 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.309 3.691 13 O -0.407 6.407 14 O -0.283 6.283 15 C -0.010 4.010 16 C -0.098 4.098 17 H 0.098 0.902 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.103 4.103 23 H 0.090 0.910 24 C -0.212 4.212 25 H 0.114 0.886 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.524 -0.672 18.266 18.286 hybrid contribution 0.412 -0.570 -0.795 1.061 sum -0.112 -1.241 17.471 17.516 Atomic orbital electron populations 1.21717 0.95657 0.99959 1.01663 1.18749 0.94837 0.96944 0.85732 0.91918 1.21187 1.31716 1.13165 0.88825 0.90628 1.24938 0.94945 0.95029 0.99122 1.69894 1.36675 1.22859 1.23692 0.86340 0.78656 0.79725 0.82203 1.19525 1.20900 1.20898 1.25302 0.76545 0.83182 0.84109 1.90487 1.36483 1.26855 1.86908 1.86591 1.70438 1.55846 1.15416 1.22983 0.98632 0.95330 0.84040 1.21186 0.95927 1.00674 0.91965 0.90183 1.21570 0.94745 1.01006 0.97897 1.21540 0.99762 0.99793 0.94548 1.21553 0.95407 1.00801 0.98037 1.21572 0.95647 1.00893 0.96744 1.21105 0.95193 0.99914 0.94115 0.91045 1.21951 0.95204 1.02091 1.01917 0.88636 0.95800 0.95073 0.92792 0.92188 0.91672 0.90698 0.92193 0.91959 0.92108 0.92289 0.92120 0.91877 0.92069 0.92474 0.92711 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.20 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.55 8.37 -34.44 -0.29 -14.84 16 5 H 0.08 2.25 6.76 -52.48 -0.35 1.90 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.46 11.16 7.25 36.01 0.26 11.42 16 13 O -0.52 -13.59 15.21 -18.75 -0.29 -13.88 16 14 O -0.36 -7.39 9.66 -39.26 -0.38 -7.77 16 15 C 0.06 1.05 4.62 37.16 0.17 1.23 16 16 C -0.08 -1.00 1.96 -90.62 -0.18 -1.18 16 17 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 18 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 19 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 20 C -0.12 -1.05 5.92 -26.74 -0.16 -1.21 16 21 C -0.11 -0.98 5.21 -26.71 -0.14 -1.12 16 22 C -0.08 -0.88 2.25 -90.59 -0.20 -1.08 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 C -0.15 -1.56 8.85 37.16 0.33 -1.23 16 25 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 26 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.06 1.00 8.13 -51.92 -0.42 0.57 16 30 H 0.07 1.06 6.17 -51.93 -0.32 0.74 16 31 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -29.56 323.00 -7.91 -37.47 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.20 Total: -1.96 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.52 Total: -10.94 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.63 Total: -24.41 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.66 Total: -21.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.56 -7.91 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.647 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds