Wall clock time and date at job start Mon Mar 30 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46897 * 2 1 4 4 C 1.50699 * 109.47236 * 240.00403 * 2 1 3 5 5 H 1.08000 * 120.00015 * 240.00174 * 4 2 1 6 6 C 1.37879 * 120.00191 * 59.99674 * 4 2 1 7 7 N 1.31520 * 119.99761 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00129 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46930 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47121 * 119.99817 * 8 6 4 11 11 H 1.48501 * 109.46825 * 239.99977 * 8 6 4 12 12 C 1.50696 * 109.47049 * 119.99925 * 2 1 3 13 13 O 1.20832 * 119.99497 * 120.00495 * 12 2 1 14 14 O 1.34228 * 120.00339 * 300.00477 * 12 2 1 15 15 C 1.45199 * 117.00046 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47121 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.47452 * 54.99744 * 16 15 14 18 18 C 1.53002 * 109.46972 * 294.99284 * 16 15 14 19 19 C 1.52996 * 109.46972 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47131 * 60.00459 * 19 18 16 21 21 C 1.52999 * 109.46991 * 299.99311 * 20 19 18 22 22 C 1.52997 * 109.47131 * 174.99744 * 16 15 14 23 23 H 1.09001 * 109.47289 * 299.99950 * 22 16 15 24 24 C 1.52997 * 109.47232 * 59.99874 * 22 16 15 25 25 H 1.09000 * 109.47184 * 299.99391 * 1 2 3 26 26 H 1.08996 * 109.47290 * 60.00170 * 1 2 3 27 27 H 1.09005 * 109.46667 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99857 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47587 * 59.99361 * 15 14 12 30 30 H 1.09007 * 109.47064 * 299.99376 * 15 14 12 31 31 H 1.08996 * 109.47407 * 300.00487 * 18 16 15 32 32 H 1.09000 * 109.46986 * 60.00258 * 18 16 15 33 33 H 1.09001 * 109.46993 * 180.02562 * 19 18 16 34 34 H 1.09000 * 109.47380 * 299.99696 * 19 18 16 35 35 H 1.09002 * 109.47153 * 179.97438 * 20 19 18 36 36 H 1.08993 * 109.47194 * 60.00154 * 20 19 18 37 37 H 1.08993 * 109.47839 * 300.00447 * 21 20 19 38 38 H 1.09000 * 109.47160 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47140 * 180.02562 * 24 22 16 40 40 H 1.09001 * 109.47230 * 299.99295 * 24 22 16 41 41 H 1.09001 * 109.47375 * 60.00133 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1466 -2.2868 -3.6039 10 1 1.1662 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6927 1.1195 14 8 1.7081 -0.2519 2.4496 15 6 2.2277 -0.9858 3.5896 16 6 1.7565 -0.3187 4.8834 17 1 0.6695 -0.2394 4.8763 18 6 2.3692 1.0793 4.9887 19 6 1.8976 1.7467 6.2822 20 6 2.3392 0.9047 7.4809 21 6 1.7265 -0.4933 7.3756 22 6 2.1987 -1.1608 6.0817 23 1 1.7623 -2.1569 6.0067 24 6 3.7246 -1.2721 6.0917 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7087 1.1614 -3.4844 29 1 3.3172 -0.9847 3.5565 30 1 1.8642 -2.0129 3.5568 31 1 3.4563 1.0001 4.9957 32 1 2.0542 1.6793 4.1350 33 1 2.3337 2.7428 6.3570 34 1 0.8105 1.8261 6.2746 35 1 2.0036 1.3804 8.4024 36 1 3.4262 0.8255 7.4884 37 1 0.6395 -0.4140 7.3680 38 1 2.0408 -1.0930 8.2298 39 1 4.0396 -1.8724 6.9452 40 1 4.0603 -1.7475 5.1700 41 1 4.1611 -0.2761 6.1667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:30 Heat of formation + Delta-G solvation = -128.419347 kcal Electronic energy + Delta-G solvation = -19479.554730 eV Core-core repulsion = 16550.934421 eV Total energy + Delta-G solvation = -2928.620309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90582 -38.93141 -35.62737 -33.84797 -32.39754 -31.52153 -30.48594 -27.37696 -25.58183 -25.17662 -23.02888 -22.25274 -21.21077 -19.70074 -18.45090 -16.69276 -16.14975 -15.87444 -15.62033 -15.40936 -14.60381 -14.43084 -14.08416 -13.67686 -13.16008 -12.87461 -12.81005 -12.61318 -12.17084 -11.90648 -11.66167 -11.59486 -11.34802 -11.13411 -11.04940 -10.93388 -10.73921 -10.67549 -10.32054 -10.23052 -10.14903 -10.03433 -10.01174 -9.79617 -9.04673 -9.00599 -8.43272 -6.08758 -4.13824 3.29717 3.36853 3.38265 3.43185 3.59521 4.42772 4.55716 4.60656 4.71665 5.06364 5.11612 5.24185 5.24582 5.26749 5.30452 5.43493 5.52655 5.59495 5.67835 5.72619 5.77064 5.87137 5.93596 6.01976 6.05631 6.11184 6.17949 6.23626 6.27477 6.45543 6.51388 6.69201 6.90326 6.91528 7.30558 7.47176 7.76739 7.97223 8.17199 8.90507 8.98015 9.51663 10.98719 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.044266 B = 0.004284 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.380845 B = 6534.809517 C = 6850.975010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.520 6.520 14 O -0.365 6.365 15 C 0.066 3.934 16 C -0.079 4.079 17 H 0.079 0.921 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.085 4.085 23 H 0.070 0.930 24 C -0.156 4.156 25 H 0.023 0.977 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 0.571 18.449 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.037 3.963 3 H 0.081 0.919 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.309 3.691 13 O -0.407 6.407 14 O -0.283 6.283 15 C -0.008 4.008 16 C -0.098 4.098 17 H 0.098 0.902 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.103 4.103 23 H 0.089 0.911 24 C -0.213 4.213 25 H 0.042 0.958 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.061 0.372 18.306 18.340 hybrid contribution 0.370 -0.596 -0.796 1.061 sum 1.431 -0.223 17.510 17.570 Atomic orbital electron populations 1.21722 0.95670 0.99976 1.01675 1.18748 0.94826 0.96944 0.85733 0.91914 1.21188 1.31709 1.13169 0.88824 0.90628 1.24941 0.94939 0.95036 0.99124 1.69894 1.36633 1.22898 1.23694 0.86339 0.78649 0.79731 0.82201 1.19526 1.20896 1.20900 1.25301 0.76547 0.83180 0.84110 1.90490 1.36485 1.26851 1.86911 1.86593 1.70388 1.55900 1.15421 1.22949 0.98711 0.95122 0.84034 1.21157 1.01233 0.95425 0.91955 0.90227 1.21600 1.00458 0.95452 0.97841 1.21530 1.01071 0.98423 0.94575 1.21586 1.00868 0.95523 0.97951 1.21540 1.00435 0.96129 0.96784 1.21068 0.96408 0.98715 0.94141 0.91114 1.22029 0.95380 1.02164 1.01765 0.95784 0.88627 0.95071 0.92793 0.91802 0.92186 0.91852 0.90832 0.92146 0.92011 0.92418 0.91761 0.91936 0.92076 0.92872 0.92346 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.21 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.55 8.37 -34.44 -0.29 -14.84 16 5 H 0.08 2.25 6.76 -52.49 -0.35 1.90 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.46 11.16 7.25 36.00 0.26 11.42 16 13 O -0.52 -13.60 15.21 -18.75 -0.29 -13.88 16 14 O -0.36 -7.39 9.66 -39.25 -0.38 -7.77 16 15 C 0.07 1.08 4.34 37.16 0.16 1.24 16 16 C -0.08 -1.00 2.21 -90.62 -0.20 -1.20 16 17 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.12 -1.40 4.83 -26.73 -0.13 -1.53 16 19 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 20 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 21 C -0.11 -0.98 5.45 -26.70 -0.15 -1.13 16 22 C -0.08 -0.88 2.72 -90.59 -0.25 -1.13 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 C -0.16 -1.57 8.15 37.16 0.30 -1.27 16 25 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 26 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.06 1.05 6.70 -51.93 -0.35 0.70 16 30 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 32 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 41 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -29.59 316.43 -7.79 -37.38 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.89 Total: -1.67 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.61 Total: -11.04 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.63 Total: -24.42 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.66 Total: -21.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.59 -7.79 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.041 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds