Wall clock time and date at job start Mon Mar 30 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46990 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.46626 * 299.99534 * 17 16 15 19 19 C 1.52994 * 109.47551 * 59.99744 * 17 16 15 20 20 C 1.52999 * 109.46990 * 179.97438 * 17 16 15 21 21 C 1.53004 * 117.49748 * 248.74012 * 20 17 16 22 22 C 1.53001 * 117.49663 * 180.08486 * 20 17 16 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 30 30 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 31 31 H 1.08999 * 109.47435 * 60.00439 * 18 17 16 32 32 H 1.09009 * 109.46867 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47134 * 299.99664 * 18 17 16 34 34 H 1.09001 * 109.47381 * 60.00022 * 19 17 16 35 35 H 1.08999 * 109.47379 * 180.02562 * 19 17 16 36 36 H 1.09005 * 109.46712 * 300.00230 * 19 17 16 37 37 H 1.09003 * 115.55657 * 34.41315 * 20 17 16 38 38 H 1.08998 * 117.49804 * 0.02562 * 21 20 17 39 39 H 1.09000 * 117.49935 * 145.01796 * 21 20 17 40 40 H 1.09000 * 117.49701 * 214.97561 * 22 20 17 41 41 H 1.08995 * 117.50067 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 6 2.3036 -1.0919 6.0848 18 6 1.7945 -2.5339 6.0387 19 6 3.8328 -1.0891 6.0385 20 6 1.8318 -0.4250 7.3785 21 6 2.8867 0.2745 8.2380 22 6 2.2793 -1.0522 8.7003 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1611 -3.4845 27 1 1.8643 -2.0126 3.5570 28 1 3.3172 -0.9843 3.5566 29 1 2.1184 0.7083 4.9164 30 1 0.6660 -0.3205 4.9163 31 1 2.1309 -3.0088 5.1171 32 1 2.1846 -3.0845 6.8949 33 1 0.7049 -2.5359 6.0718 34 1 4.1955 -0.0618 6.0712 35 1 4.2232 -1.6401 6.8941 36 1 4.1692 -1.5640 5.1167 37 1 0.8366 0.0183 7.3432 38 1 3.9167 0.2600 7.8816 39 1 2.5855 1.1779 8.7683 40 1 1.5786 -1.0211 9.5347 41 1 2.9093 -1.9401 8.6483 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849851258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:04 Heat of formation + Delta-G solvation = -88.551501 kcal Electronic energy + Delta-G solvation = -19078.773588 eV Core-core repulsion = 16151.882079 eV Total energy + Delta-G solvation = -2926.891509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77999 -39.07999 -35.90437 -34.27267 -33.84381 -30.64050 -28.98502 -27.56705 -25.20970 -25.13439 -23.07026 -22.41582 -21.38850 -19.76581 -18.33424 -16.86466 -16.26075 -15.92070 -15.81538 -15.49135 -14.85752 -14.24038 -14.12396 -13.85927 -13.16458 -12.89267 -12.64105 -12.54089 -12.12430 -11.85996 -11.64020 -11.44438 -11.23406 -11.17934 -11.03944 -11.01327 -10.77814 -10.67455 -10.52722 -10.32479 -10.29375 -10.07012 -10.02105 -9.80284 -9.05227 -9.02766 -8.42421 -6.08460 -4.13808 3.33425 3.36218 3.37524 3.39061 3.51048 3.67880 4.39563 4.46192 4.64668 4.72964 4.85183 4.99230 5.02290 5.24542 5.28449 5.38852 5.41519 5.45048 5.56794 5.60416 5.67013 5.78186 5.81707 5.88966 5.92522 5.98194 6.00361 6.13488 6.27659 6.31912 6.34483 6.69334 6.90513 6.91596 7.29928 7.47164 7.76771 7.97066 8.17250 8.89568 8.97324 9.51516 10.98974 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.051002 B = 0.003746 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.862943 B = 7472.602719 C = 7672.482568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.464 3.536 13 O -0.520 6.520 14 O -0.368 6.368 15 C 0.059 3.941 16 C -0.105 4.105 17 C -0.030 4.030 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.139 4.139 21 C -0.185 4.185 22 C -0.180 4.180 23 H 0.095 0.905 24 H 0.030 0.970 25 H 0.023 0.977 26 H 0.264 0.736 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -1.451 19.349 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.733 3.267 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.407 6.407 14 O -0.286 6.286 15 C -0.015 4.015 16 C -0.142 4.142 17 C -0.030 4.030 18 C -0.203 4.203 19 C -0.209 4.209 20 C -0.157 4.157 21 C -0.222 4.222 22 C -0.217 4.217 23 H 0.114 0.886 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.252 -1.645 19.200 19.311 hybrid contribution 0.367 -0.533 -0.704 0.957 sum 1.619 -2.178 18.496 18.694 Atomic orbital electron populations 1.21725 0.95661 0.99990 1.01694 1.18741 0.94838 0.96949 0.85676 0.91892 1.21108 1.31896 1.13236 0.88853 0.90718 1.24939 0.94917 0.95026 0.99109 1.69874 1.36516 1.22835 1.23919 0.86435 0.79289 0.79672 0.81338 1.21219 1.20086 1.20096 1.25304 0.76536 0.83177 0.84074 1.90483 1.36481 1.26843 1.86896 1.86593 1.70450 1.56023 1.15531 1.22998 0.98744 0.95613 0.84126 1.21542 1.01601 0.99846 0.91243 1.19979 0.95426 0.95114 0.92470 1.21952 1.01372 0.95008 1.01937 1.22116 0.94611 1.02130 1.02038 1.22309 0.99133 1.03372 0.90873 1.23156 0.99205 0.95963 1.03883 1.22933 1.04025 0.97014 0.97720 0.88601 0.95049 0.95781 0.92660 0.91797 0.91820 0.90783 0.90839 0.92071 0.92584 0.92336 0.91989 0.92576 0.91986 0.87762 0.88109 0.89169 0.89128 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.90 37.16 0.33 -2.87 16 2 C 0.06 1.48 2.74 -92.93 -0.25 1.22 16 3 H 0.06 1.68 8.14 -51.92 -0.42 1.26 16 4 C -0.51 -14.64 8.37 -34.44 -0.29 -14.93 16 5 H 0.07 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.46 11.22 7.25 36.00 0.26 11.48 16 13 O -0.52 -13.56 15.21 -18.75 -0.29 -13.85 16 14 O -0.37 -7.54 10.12 -39.25 -0.40 -7.94 16 15 C 0.06 0.97 4.76 37.16 0.18 1.14 16 16 C -0.10 -1.31 4.63 -26.73 -0.12 -1.44 16 17 C -0.03 -0.31 0.65 -154.51 -0.10 -0.41 16 18 C -0.15 -1.47 7.96 37.16 0.30 -1.18 16 19 C -0.15 -1.52 6.72 37.15 0.25 -1.27 16 20 C -0.14 -1.26 5.15 -90.62 -0.47 -1.73 16 21 C -0.19 -1.53 9.57 -26.69 -0.26 -1.78 16 22 C -0.18 -1.43 9.38 -26.69 -0.25 -1.68 16 23 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 27 H 0.06 1.04 6.42 -51.93 -0.33 0.71 16 28 H 0.06 1.03 6.42 -51.93 -0.33 0.70 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 32 H 0.06 0.50 7.29 -51.92 -0.38 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.60 6.97 -51.93 -0.36 0.24 16 35 H 0.06 0.49 7.07 -51.93 -0.37 0.13 16 36 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 37 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 38 H 0.10 0.82 5.85 -51.93 -0.30 0.52 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.73 7.07 -51.93 -0.37 0.36 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -29.74 323.21 -7.45 -37.18 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.72 Total: -0.62 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.52 Total: -11.82 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.63 Total: -24.48 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.68 Total: -21.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.74 -7.45 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849851258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.368 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds