Wall clock time and date at job start Mon Mar 30 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46990 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.46626 * 299.99534 * 17 16 15 19 19 C 1.52994 * 109.47551 * 59.99744 * 17 16 15 20 20 C 1.52999 * 109.46990 * 179.97438 * 17 16 15 21 21 C 1.53004 * 117.49748 * 248.74012 * 20 17 16 22 22 C 1.53001 * 117.49663 * 180.08486 * 20 17 16 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.09006 * 109.47239 * 299.99741 * 16 15 14 30 30 H 1.08995 * 109.47984 * 59.99571 * 16 15 14 31 31 H 1.08999 * 109.47435 * 60.00439 * 18 17 16 32 32 H 1.09009 * 109.46867 * 180.02562 * 18 17 16 33 33 H 1.09004 * 109.47134 * 299.99664 * 18 17 16 34 34 H 1.09001 * 109.47381 * 60.00022 * 19 17 16 35 35 H 1.08999 * 109.47379 * 180.02562 * 19 17 16 36 36 H 1.09005 * 109.46712 * 300.00230 * 19 17 16 37 37 H 1.09003 * 115.55657 * 34.41315 * 20 17 16 38 38 H 1.08998 * 117.49804 * 0.02562 * 21 20 17 39 39 H 1.09000 * 117.49935 * 145.01796 * 21 20 17 40 40 H 1.09000 * 117.49701 * 214.97561 * 22 20 17 41 41 H 1.08995 * 117.50067 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 6 2.3036 -1.0919 6.0848 18 6 1.7945 -2.5339 6.0387 19 6 3.8328 -1.0891 6.0385 20 6 1.8318 -0.4250 7.3785 21 6 2.8867 0.2745 8.2380 22 6 2.2793 -1.0522 8.7003 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1611 -3.4845 27 1 1.8643 -2.0126 3.5570 28 1 3.3172 -0.9843 3.5566 29 1 2.1184 0.7083 4.9164 30 1 0.6660 -0.3205 4.9163 31 1 2.1309 -3.0088 5.1171 32 1 2.1846 -3.0845 6.8949 33 1 0.7049 -2.5359 6.0718 34 1 4.1955 -0.0618 6.0712 35 1 4.2232 -1.6401 6.8941 36 1 4.1692 -1.5640 5.1167 37 1 0.8366 0.0183 7.3432 38 1 3.9167 0.2600 7.8816 39 1 2.5855 1.1779 8.7683 40 1 1.5786 -1.0211 9.5347 41 1 2.9093 -1.9401 8.6483 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849851258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:04 Heat of formation + Delta-G solvation = -102.740935 kcal Electronic energy + Delta-G solvation = -19079.388888 eV Core-core repulsion = 16151.882079 eV Total energy + Delta-G solvation = -2927.506810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39003 -40.10648 -37.55732 -35.92546 -35.24763 -32.68065 -30.14705 -28.36944 -27.29057 -26.26439 -24.80578 -23.03403 -22.48180 -21.60720 -19.16491 -18.65858 -18.07036 -17.59246 -17.31802 -16.79862 -16.19097 -15.58479 -15.50652 -14.83576 -14.69646 -14.26872 -14.15151 -13.60579 -13.53470 -13.03561 -13.01176 -12.81577 -12.74191 -12.60140 -12.54550 -12.32975 -12.24370 -12.05273 -11.97167 -11.85524 -11.41486 -11.32419 -11.17098 -11.11735 -10.90974 -10.71124 -10.53216 -8.20555 -6.34175 1.41941 1.42990 1.45586 1.52187 1.91591 2.43802 2.96719 3.09338 3.58814 3.77956 3.88008 4.06663 4.13189 4.19295 4.23580 4.33064 4.39987 4.45075 4.62550 4.68027 4.75178 4.85033 4.89272 4.91926 4.93645 4.98332 5.02958 5.05709 5.13442 5.14453 5.32709 5.35373 5.39591 5.42787 5.48358 5.52483 5.69190 5.88134 6.09973 6.72034 7.05599 7.34665 8.85844 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.051002 B = 0.003746 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.862943 B = 7472.602719 C = 7672.482568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.471 3.529 13 O -0.545 6.545 14 O -0.364 6.364 15 C 0.055 3.945 16 C -0.097 4.097 17 C -0.024 4.024 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.185 4.185 22 C -0.172 4.172 23 H 0.078 0.922 24 H 0.028 0.972 25 H 0.049 0.951 26 H 0.269 0.731 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -1.525 20.511 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.435 6.435 14 O -0.282 6.282 15 C -0.019 4.019 16 C -0.134 4.134 17 C -0.024 4.024 18 C -0.203 4.203 19 C -0.209 4.209 20 C -0.167 4.167 21 C -0.222 4.222 22 C -0.209 4.209 23 H 0.097 0.903 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.130 -1.701 20.388 20.490 hybrid contribution 0.405 -0.486 -0.974 1.162 sum 1.535 -2.187 19.414 19.597 Atomic orbital electron populations 1.21557 0.94330 0.99869 1.02032 1.18679 0.95968 0.96120 0.86234 0.93182 1.21241 1.32777 1.13367 0.90586 0.92601 1.25652 0.94846 0.95648 1.01575 1.69954 1.36560 1.23384 1.24851 0.85517 0.78732 0.78675 0.78183 1.19773 1.19898 1.19861 1.24845 0.76003 0.82524 0.84952 1.90463 1.37594 1.27894 1.87527 1.86542 1.70112 1.56172 1.15357 1.23374 0.98833 0.95792 0.83876 1.21561 1.01907 0.99948 0.90011 1.19918 0.95468 0.94941 0.92086 1.21956 1.01568 0.94961 1.01802 1.22121 0.94459 1.02410 1.01900 1.22230 0.99507 1.04336 0.90600 1.23225 0.98958 0.96538 1.03491 1.23001 1.03849 0.96945 0.97066 0.90325 0.95289 0.93237 0.92196 0.91863 0.91917 0.90559 0.90419 0.93549 0.91163 0.92118 0.91691 0.91126 0.93494 0.87627 0.88070 0.88433 0.88104 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.90 71.98 0.64 -5.14 16 2 C 0.05 2.58 2.74 -12.29 -0.03 2.55 16 3 H 0.05 2.74 8.14 -2.38 -0.02 2.72 16 4 C -0.54 -31.41 8.37 25.60 0.21 -31.20 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -51.03 11.32 21.45 0.24 -50.78 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.47 23.02 7.25 71.24 0.52 23.53 16 13 O -0.54 -28.94 15.21 21.98 0.33 -28.60 16 14 O -0.36 -14.85 10.12 -51.39 -0.52 -15.37 16 15 C 0.05 1.76 4.76 71.98 0.34 2.10 16 16 C -0.10 -2.31 4.63 30.60 0.14 -2.17 16 17 C -0.02 -0.46 0.65 -52.18 -0.03 -0.49 16 18 C -0.15 -2.75 7.96 71.98 0.57 -2.17 16 19 C -0.15 -2.83 6.72 71.98 0.48 -2.35 16 20 C -0.15 -2.37 5.15 -10.79 -0.06 -2.43 16 21 C -0.19 -2.62 9.57 30.62 0.29 -2.32 16 22 C -0.17 -2.28 9.38 30.62 0.29 -1.99 16 23 H 0.08 4.07 6.07 -2.39 -0.01 4.05 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 2.07 8.11 -2.39 -0.02 2.05 16 26 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.06 2.06 6.42 -2.39 -0.02 2.04 16 28 H 0.06 2.04 6.42 -2.39 -0.02 2.02 16 29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.00 6.43 -2.39 -0.02 0.99 16 32 H 0.07 1.11 7.29 -2.38 -0.02 1.10 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.16 6.97 -2.39 -0.02 1.15 16 35 H 0.07 1.10 7.07 -2.39 -0.02 1.09 16 36 H 0.05 1.01 6.43 -2.38 -0.02 0.99 16 37 H 0.11 1.68 8.11 -2.39 -0.02 1.66 16 38 H 0.10 1.42 5.85 -2.39 -0.01 1.41 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.10 1.23 7.07 -2.39 -0.02 1.21 16 Total: -1.00 -62.69 323.21 6.90 -55.79 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.00 Total: 13.05 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 3.82 Total: -20.36 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.24 Total: -50.78 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.19 Total: -43.98 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.69 6.90 -55.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849851258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.954 kcal (2) G-P(sol) polarization free energy of solvation -62.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds