Wall clock time and date at job start Mon Mar 30 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46850 * 2 1 4 4 C 1.50695 * 109.47209 * 239.99678 * 2 1 3 5 5 H 1.08000 * 120.00359 * 240.00094 * 4 2 1 6 6 C 1.37879 * 120.00027 * 60.00626 * 4 2 1 7 7 N 1.31515 * 119.99941 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00275 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47142 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47636 * 119.99273 * 8 6 4 11 11 H 1.48503 * 109.47030 * 239.99684 * 8 6 4 12 12 C 1.50699 * 109.47177 * 119.99882 * 2 1 3 13 13 O 1.20816 * 120.00278 * 120.00074 * 12 2 1 14 14 O 1.34233 * 119.99701 * 300.00300 * 12 2 1 15 15 C 1.45207 * 116.99928 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.47062 * 29.99745 * 15 14 12 17 17 C 1.53002 * 109.47000 * 269.99924 * 15 14 12 18 18 C 1.52995 * 109.46602 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47310 * 60.00177 * 18 17 15 20 20 C 1.52999 * 109.47317 * 299.99815 * 19 18 17 21 21 H 1.09000 * 109.47486 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46623 * 299.99820 * 20 19 18 23 23 C 1.52997 * 109.47269 * 59.99656 * 20 19 18 24 24 H 1.09001 * 109.47230 * 59.99691 * 23 20 19 25 25 C 1.53002 * 109.47415 * 180.02562 * 23 20 19 26 26 H 1.08999 * 109.47484 * 300.00224 * 1 2 3 27 27 H 1.09000 * 109.47207 * 60.00373 * 1 2 3 28 28 H 1.09006 * 109.47380 * 180.02562 * 1 2 3 29 29 H 0.97007 * 120.00152 * 180.02562 * 7 6 4 30 30 H 1.08992 * 109.47060 * 299.99815 * 17 15 14 31 31 H 1.08999 * 109.46623 * 60.00129 * 17 15 14 32 32 H 1.09001 * 109.46885 * 179.97438 * 18 17 15 33 33 H 1.09002 * 109.47457 * 299.99819 * 18 17 15 34 34 H 1.09001 * 109.47502 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47153 * 59.99456 * 19 18 17 36 36 H 1.09001 * 109.47002 * 179.97438 * 22 20 19 37 37 H 1.08993 * 109.46955 * 300.00075 * 22 20 19 38 38 H 1.09000 * 109.47050 * 59.99904 * 22 20 19 39 39 H 1.09002 * 109.47070 * 59.99947 * 25 23 20 40 40 H 1.08992 * 109.46974 * 180.02562 * 25 23 20 41 41 H 1.08996 * 109.46550 * 300.00288 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2872 -3.6037 10 1 1.1662 -1.5868 -4.8161 11 1 3.1467 -0.1875 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2267 -0.9862 3.5897 16 1 3.1794 -1.4442 3.3240 17 6 1.2307 -2.0766 3.9899 18 6 1.7776 -2.8509 5.1908 19 6 1.9832 -1.8920 6.3652 20 6 2.9790 -0.8016 5.9651 21 1 3.1251 -0.1182 6.8016 22 6 4.3163 -1.4445 5.5915 23 6 2.4322 -0.0273 4.7641 24 1 1.4795 0.4306 5.0302 25 6 3.4284 1.0628 4.3635 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7083 1.1609 -3.4845 30 1 0.2780 -1.6187 4.2556 31 1 1.0847 -2.7599 3.1534 32 1 1.0679 -3.6274 5.4762 33 1 2.7302 -3.3089 4.9247 34 1 2.3724 -2.4437 7.2209 35 1 1.0305 -1.4340 6.6313 36 1 5.0257 -0.6678 5.3060 37 1 4.7057 -1.9961 6.4470 38 1 4.1698 -2.1277 4.7548 39 1 4.3809 0.6044 4.0973 40 1 3.0386 1.6146 3.5083 41 1 3.5752 1.7459 5.2001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850927763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:13 Heat of formation + Delta-G solvation = -139.350235 kcal Electronic energy + Delta-G solvation = -20028.815408 eV Core-core repulsion = 17099.721100 eV Total energy + Delta-G solvation = -2929.094308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71880 -39.92053 -37.09673 -35.92986 -33.79571 -32.81047 -31.78070 -28.39905 -27.31178 -26.76243 -25.18773 -23.26449 -22.29143 -21.44067 -19.54296 -18.68726 -18.05320 -17.51731 -16.84558 -16.42971 -15.99193 -15.65073 -15.05089 -14.96020 -14.74166 -14.39651 -14.17665 -13.59634 -13.44306 -13.23844 -12.99750 -12.90309 -12.82469 -12.62968 -12.61457 -12.54606 -12.30187 -12.15711 -12.07817 -11.78807 -11.56350 -11.38972 -11.14884 -11.04920 -10.91034 -10.77016 -10.53812 -8.21659 -6.34950 1.39278 1.40797 1.47535 1.54024 1.95459 2.43021 3.08088 3.55806 3.67395 3.83036 4.01378 4.07620 4.17832 4.31372 4.35841 4.40766 4.53145 4.61128 4.66091 4.69845 4.82674 4.87498 4.88550 4.94875 5.00601 5.01089 5.06902 5.15062 5.17480 5.21303 5.31599 5.34628 5.39899 5.43713 5.56159 5.61588 5.71754 5.87183 6.09134 6.71693 7.09519 7.34004 8.85122 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.005092 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.054488 B = 5497.980377 C = 5554.508530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.272 1.272 12 C 0.472 3.528 13 O -0.546 6.546 14 O -0.358 6.358 15 C 0.079 3.921 16 H 0.063 0.937 17 C -0.134 4.134 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.078 4.078 21 H 0.100 0.900 22 C -0.158 4.158 23 C -0.077 4.077 24 H 0.085 0.915 25 C -0.150 4.150 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.268 0.732 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 -1.916 18.489 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.197 1.197 12 C 0.318 3.682 13 O -0.435 6.435 14 O -0.275 6.275 15 C 0.025 3.975 16 H 0.081 0.919 17 C -0.172 4.172 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.096 4.096 21 H 0.119 0.881 22 C -0.215 4.215 23 C -0.095 4.095 24 H 0.103 0.897 25 C -0.207 4.207 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.626 -2.094 18.364 18.554 hybrid contribution 0.360 -0.500 -1.353 1.487 sum 1.986 -2.594 17.011 17.321 Atomic orbital electron populations 1.21538 0.94417 0.99740 1.01927 1.18664 0.95883 0.96010 0.86445 0.93449 1.21267 1.32555 1.13183 0.90570 0.92791 1.25648 0.94880 0.95658 1.01566 1.69968 1.36655 1.23422 1.24696 0.85417 0.78412 0.78502 0.78797 1.20248 1.19646 1.19726 1.24777 0.75822 0.82485 0.85157 1.90449 1.37738 1.27970 1.87382 1.86591 1.69898 1.55902 1.15131 1.23038 0.97334 0.93204 0.83920 0.91940 1.21931 0.99361 0.96874 0.98997 1.21525 1.01332 0.98242 0.93936 1.21622 0.99685 0.96233 0.97377 1.21150 0.95060 0.97171 0.96207 0.88139 1.22048 0.97015 1.00807 1.01664 1.21260 1.00459 0.95050 0.92733 0.89653 1.21869 0.98560 0.98458 1.01839 0.93391 0.90341 0.95418 0.92228 0.90406 0.94358 0.90148 0.92137 0.89535 0.90782 0.92492 0.90774 0.94141 0.93140 0.94124 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.90 71.98 0.64 -5.14 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 4 C -0.54 -31.48 8.37 25.60 0.21 -31.27 16 5 H 0.05 3.33 6.76 -2.91 -0.02 3.31 16 6 C 0.02 1.25 5.30 84.66 0.45 1.70 16 7 N -0.91 -51.28 11.32 21.45 0.24 -51.04 16 8 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 C 0.47 23.35 7.22 71.24 0.51 23.87 16 13 O -0.55 -29.41 14.68 21.99 0.32 -29.09 16 14 O -0.36 -14.81 9.11 -51.45 -0.47 -15.28 16 15 C 0.08 2.63 1.61 30.60 0.05 2.68 16 16 H 0.06 2.33 5.44 -2.39 -0.01 2.31 16 17 C -0.13 -3.92 5.56 30.59 0.17 -3.75 16 18 C -0.11 -2.41 5.65 30.59 0.17 -2.24 16 19 C -0.11 -1.82 5.45 30.59 0.17 -1.65 16 20 C -0.08 -1.40 2.72 -10.79 -0.03 -1.43 16 21 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 22 C -0.16 -3.07 8.15 71.98 0.59 -2.49 16 23 C -0.08 -1.88 2.24 -10.79 -0.02 -1.91 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 C -0.15 -3.76 8.70 71.98 0.63 -3.13 16 26 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 27 H 0.08 4.11 6.07 -2.39 -0.01 4.09 16 28 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.38 6.43 -2.39 -0.02 1.36 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.12 6.43 -2.39 -0.02 1.11 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.04 0.97 4.81 -2.39 -0.01 0.96 16 39 H 0.05 1.30 6.43 -2.39 -0.02 1.29 16 40 H 0.04 1.20 7.68 -2.39 -0.02 1.18 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.60 314.61 6.62 -57.98 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.99 Total: 12.94 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 3.50 Total: -22.18 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.24 Total: -51.04 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.15 Total: -44.37 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.60 6.62 -57.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850927763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.367 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds