Wall clock time and date at job start Mon Mar 30 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 C 1.50697 * 109.47419 * 119.99959 * 2 1 3 13 13 O 1.20829 * 119.99840 * 120.00268 * 12 2 1 14 14 O 1.34227 * 119.99855 * 300.00817 * 12 2 1 15 15 C 1.45207 * 116.99713 * 180.02562 * 14 12 2 16 16 H 1.08997 * 109.47009 * 29.99436 * 15 14 12 17 17 C 1.53002 * 109.46636 * 269.99351 * 15 14 12 18 18 C 1.53000 * 109.47066 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.46780 * 60.00155 * 18 17 15 20 20 C 1.52992 * 109.47131 * 299.99876 * 19 18 17 21 21 H 1.08997 * 109.47432 * 300.00361 * 20 19 18 22 22 C 1.53002 * 109.47327 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.46895 * 149.99840 * 15 14 12 24 24 H 1.08997 * 109.47622 * 59.99971 * 23 15 14 25 25 C 1.53002 * 109.47078 * 299.99239 * 23 15 14 26 26 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 27 27 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 29 29 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47291 * 300.00301 * 17 15 14 31 31 H 1.09004 * 109.46956 * 60.00205 * 17 15 14 32 32 H 1.08994 * 109.47048 * 179.97438 * 18 17 15 33 33 H 1.08998 * 109.47461 * 300.00380 * 18 17 15 34 34 H 1.08998 * 109.46940 * 59.99905 * 19 18 17 35 35 H 1.09005 * 109.46577 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.46262 * 60.00092 * 22 20 19 37 37 H 1.08994 * 109.47273 * 179.97438 * 22 20 19 38 38 H 1.08997 * 109.47376 * 300.00661 * 22 20 19 39 39 H 1.08993 * 109.46734 * 60.00512 * 25 23 15 40 40 H 1.09004 * 109.46956 * 180.02562 * 25 23 15 41 41 H 1.08998 * 109.47291 * 300.00301 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7271 -1.6927 1.1195 14 8 1.7080 -0.2519 2.4495 15 6 2.2278 -0.9858 3.5896 16 1 3.1808 -1.4429 3.3236 17 6 1.2328 -2.0769 3.9902 18 6 1.7807 -2.8506 5.1911 19 6 1.9858 -1.8913 6.3653 20 6 2.9807 -0.8003 5.9647 21 1 3.9336 -1.2575 5.6982 22 6 3.1854 0.1593 7.1386 23 6 2.4324 -0.0262 4.7635 24 1 1.4794 0.4310 5.0296 25 6 3.4274 1.0649 4.3629 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7046 1.1585 -3.4844 30 1 0.2798 -1.6197 4.2562 31 1 1.0870 -2.7605 3.1538 32 1 1.0717 -3.6276 5.4768 33 1 2.7336 -3.3079 4.9247 34 1 1.0329 -1.4341 6.6317 35 1 2.3757 -2.4427 7.2210 36 1 3.5755 -0.3917 7.9944 37 1 3.8945 0.9364 6.8533 38 1 2.2324 0.6165 7.4047 39 1 3.0373 1.6158 3.5071 40 1 3.5735 1.7483 5.1994 41 1 4.3804 0.6078 4.0969 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850927764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:16 Heat of formation + Delta-G solvation = -143.353986 kcal Electronic energy + Delta-G solvation = -19836.844322 eV Core-core repulsion = 16907.576399 eV Total energy + Delta-G solvation = -2929.267924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65195 -39.73765 -37.09715 -35.93112 -34.06809 -32.86810 -32.02442 -28.16026 -27.30824 -26.61468 -25.15236 -22.82849 -22.08468 -21.34337 -20.65579 -18.63511 -18.01641 -17.49539 -16.86838 -16.34818 -15.72726 -15.59864 -15.36849 -14.99994 -14.74117 -14.37898 -13.89570 -13.65538 -13.45190 -13.12268 -12.99280 -12.82091 -12.77916 -12.67886 -12.62017 -12.57812 -12.31708 -12.07649 -12.03974 -11.83017 -11.64855 -11.40430 -11.38620 -11.12438 -10.91061 -10.75312 -10.53617 -8.21409 -6.34859 1.40580 1.40957 1.46725 1.52756 1.93232 2.42925 3.08268 3.56422 3.66148 3.79987 3.96151 4.07858 4.09723 4.35143 4.39069 4.44856 4.51555 4.63119 4.66097 4.71642 4.80382 4.88344 4.90102 4.94499 4.98417 5.02372 5.05283 5.15739 5.17392 5.20393 5.31231 5.31872 5.39618 5.49080 5.54623 5.60518 5.70940 5.87337 6.09229 6.71411 7.08485 7.33973 8.85081 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.038326 B = 0.004883 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.392023 B = 5732.291852 C = 5911.923199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.472 3.528 13 O -0.546 6.546 14 O -0.356 6.356 15 C 0.081 3.919 16 H 0.056 0.944 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.111 4.111 20 C -0.083 4.083 21 H 0.065 0.935 22 C -0.142 4.142 23 C -0.074 4.074 24 H 0.085 0.915 25 C -0.150 4.150 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.047 0.953 29 H 0.268 0.732 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -1.361 18.923 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.577 4.577 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.436 6.436 14 O -0.274 6.274 15 C 0.026 3.974 16 H 0.074 0.926 17 C -0.171 4.171 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.101 4.101 21 H 0.084 0.916 22 C -0.199 4.199 23 C -0.093 4.093 24 H 0.103 0.897 25 C -0.207 4.207 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.148 -1.535 18.799 18.896 hybrid contribution 0.403 -0.537 -1.348 1.506 sum 1.551 -2.073 17.451 17.642 Atomic orbital electron populations 1.21541 0.94388 0.99750 1.01953 1.18667 0.95901 0.96017 0.86390 0.93411 1.21240 1.32645 1.13237 0.90574 0.92777 1.25647 0.94874 0.95649 1.01553 1.69961 1.36437 1.23544 1.24758 0.85467 0.78673 0.78482 0.78516 1.19711 1.19711 1.20157 1.24797 0.75810 0.82486 0.85146 1.90453 1.37747 1.27986 1.87375 1.86597 1.69811 1.55882 1.15079 1.22986 0.97134 0.93261 0.83976 0.92575 1.21932 0.99347 0.96819 0.99020 1.21482 1.01288 0.98202 0.93887 1.21644 0.99813 0.95994 0.97380 1.21165 0.98813 0.96131 0.94026 0.91634 1.21833 1.02381 0.98954 0.96776 1.21270 1.00552 0.95047 0.92391 0.89661 1.21874 0.98259 0.98659 1.01901 0.90308 0.95423 0.93372 0.92219 0.90292 0.94197 0.89881 0.92475 0.90833 0.89628 0.91229 0.92116 0.91930 0.94000 0.89589 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.90 71.98 0.64 -5.14 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.59 16 3 H 0.05 2.65 8.14 -2.38 -0.02 2.63 16 4 C -0.54 -31.53 8.37 25.60 0.21 -31.31 16 5 H 0.05 3.33 6.76 -2.91 -0.02 3.31 16 6 C 0.02 1.27 5.31 84.66 0.45 1.72 16 7 N -0.91 -51.23 11.31 21.45 0.24 -50.99 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.47 23.35 7.22 71.24 0.51 23.87 16 13 O -0.55 -29.46 14.68 21.95 0.32 -29.13 16 14 O -0.36 -14.75 9.11 -51.39 -0.47 -15.21 16 15 C 0.08 2.70 1.88 30.59 0.06 2.76 16 16 H 0.06 2.11 7.16 -2.39 -0.02 2.10 16 17 C -0.13 -3.90 5.56 30.59 0.17 -3.73 16 18 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 19 C -0.11 -1.85 5.20 30.59 0.16 -1.69 16 20 C -0.08 -1.55 2.25 -10.78 -0.02 -1.58 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 C -0.14 -1.99 8.84 71.98 0.64 -1.36 16 23 C -0.07 -1.85 2.00 -10.77 -0.02 -1.87 16 24 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 25 C -0.15 -3.80 8.70 71.98 0.63 -3.17 16 26 H 0.08 4.12 6.06 -2.39 -0.01 4.11 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 29 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.06 0.85 6.43 -2.39 -0.02 0.83 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.04 1.25 7.68 -2.39 -0.02 1.23 16 40 H 0.09 1.67 6.43 -2.38 -0.02 1.66 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -64.30 321.63 6.67 -57.63 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.98 Total: 12.18 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 3.57 Total: -21.11 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.24 Total: -50.99 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.15 Total: -44.35 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.30 6.67 -57.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850927764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.725 kcal (2) G-P(sol) polarization free energy of solvation -64.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds