Wall clock time and date at job start Mon Mar 30 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47122 * 2 1 4 4 C 1.50697 * 109.47436 * 240.00321 * 2 1 3 5 5 H 1.08001 * 120.00408 * 240.00015 * 4 2 1 6 6 C 1.37878 * 120.00328 * 59.99581 * 4 2 1 7 7 N 1.31519 * 119.99775 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00627 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46772 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47241 * 119.99894 * 8 6 4 11 11 H 1.48501 * 109.46997 * 240.00702 * 8 6 4 12 12 C 1.50702 * 109.47082 * 119.99886 * 2 1 3 13 13 O 1.20824 * 119.99533 * 120.00220 * 12 2 1 14 14 O 1.34222 * 120.00440 * 300.00527 * 12 2 1 15 15 C 1.45194 * 117.00395 * 179.97438 * 14 12 2 16 16 H 1.08998 * 109.46869 * 30.00435 * 15 14 12 17 17 C 1.52997 * 109.47339 * 269.99953 * 15 14 12 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 15 20 20 C 1.53002 * 109.46891 * 299.99597 * 19 18 17 21 21 H 1.09001 * 109.47142 * 300.00176 * 20 19 18 22 22 C 1.52996 * 109.46891 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.46978 * 60.00410 * 20 19 18 24 24 H 1.09000 * 109.47140 * 179.97438 * 23 20 19 25 25 C 1.53002 * 109.47415 * 59.99902 * 23 20 19 26 26 H 1.08997 * 109.47660 * 299.99779 * 1 2 3 27 27 H 1.09005 * 109.47321 * 60.00358 * 1 2 3 28 28 H 1.09006 * 109.47072 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00158 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47153 * 59.99705 * 17 15 14 31 31 H 1.09001 * 109.46832 * 299.99896 * 17 15 14 32 32 H 1.09004 * 109.46724 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.47194 * 299.99650 * 18 17 15 34 34 H 1.08992 * 109.47554 * 59.99639 * 19 18 17 35 35 H 1.09004 * 109.47108 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47261 * 60.00575 * 22 20 19 37 37 H 1.09004 * 109.47368 * 180.02562 * 22 20 19 38 38 H 1.09001 * 109.47372 * 300.00036 * 22 20 19 39 39 H 1.08992 * 109.47063 * 59.99950 * 25 23 20 40 40 H 1.08996 * 109.47407 * 180.02562 * 25 23 20 41 41 H 1.09004 * 109.46733 * 299.99664 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1467 -2.2868 -3.6038 10 1 1.1663 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9864 3.5896 16 1 3.1795 -1.4442 3.3238 17 6 1.2309 -2.0768 3.9898 18 6 1.7772 -2.8504 5.1915 19 6 1.9817 -1.8909 6.3655 20 6 2.9777 -0.8005 5.9653 21 1 3.9306 -1.2584 5.7000 22 6 3.1817 0.1594 7.1391 23 6 2.4314 -0.0269 4.7637 24 1 3.1407 0.7502 4.4789 25 6 1.0938 0.6159 5.1361 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7095 1.1619 -3.4844 30 1 1.0847 -2.7602 3.1532 31 1 0.2781 -1.6189 4.2555 32 1 1.0679 -3.6275 5.4762 33 1 2.7301 -3.3083 4.9261 34 1 1.0289 -1.4330 6.6308 35 1 2.3705 -2.4421 7.2217 36 1 3.5708 -0.3913 7.9955 37 1 3.8909 0.9365 6.8540 38 1 2.2287 0.6173 7.4040 39 1 1.2396 1.2994 5.9725 40 1 0.7044 1.1666 4.2799 41 1 0.3843 -0.1610 5.4211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850927765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:19 Heat of formation + Delta-G solvation = -124.713397 kcal Electronic energy + Delta-G solvation = -19888.273152 eV Core-core repulsion = 16959.813545 eV Total energy + Delta-G solvation = -2928.459607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17946 -38.57225 -35.42862 -33.84482 -32.63991 -31.22818 -30.37577 -27.29267 -25.76002 -25.17687 -23.47255 -22.00435 -21.30256 -19.46330 -18.46163 -16.67810 -16.13405 -15.91507 -15.36548 -15.10721 -14.78010 -14.29481 -13.89482 -13.64200 -13.14879 -12.74322 -12.60013 -12.40487 -12.30972 -12.02299 -11.64246 -11.52886 -11.36270 -11.05565 -10.95543 -10.79003 -10.71583 -10.67537 -10.43719 -10.37098 -10.26360 -10.09468 -9.99910 -9.58046 -9.01733 -8.99955 -8.42848 -6.08437 -4.13435 3.29766 3.36967 3.39162 3.43049 3.58448 4.42917 4.59832 4.68635 4.82179 5.07730 5.12994 5.24908 5.28721 5.30677 5.39087 5.50949 5.59060 5.61636 5.68532 5.77985 5.89132 5.92993 5.98457 6.04325 6.05938 6.14874 6.30153 6.33748 6.37871 6.43096 6.62374 6.69721 6.91053 6.92504 7.34423 7.47970 7.77202 7.97643 8.17780 8.91639 8.99303 9.52026 10.99045 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040845 B = 0.004834 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.356407 B = 5790.725049 C = 5992.310189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 H 0.062 0.938 4 C -0.510 4.510 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.464 3.536 13 O -0.519 6.519 14 O -0.359 6.359 15 C 0.090 3.910 16 H 0.076 0.924 17 C -0.136 4.136 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.086 4.086 21 H 0.070 0.930 22 C -0.146 4.146 23 C -0.081 4.081 24 H 0.075 0.925 25 C -0.148 4.148 26 H 0.023 0.977 27 H 0.095 0.905 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -1.486 17.433 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.548 4.548 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.308 3.692 13 O -0.406 6.406 14 O -0.277 6.277 15 C 0.034 3.966 16 H 0.095 0.905 17 C -0.173 4.173 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.104 4.104 21 H 0.088 0.912 22 C -0.204 4.204 23 C -0.099 4.099 24 H 0.093 0.907 25 C -0.205 4.205 26 H 0.042 0.958 27 H 0.113 0.887 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.494 -1.683 17.289 17.378 hybrid contribution 0.404 -0.552 -0.878 1.113 sum 0.899 -2.235 16.411 16.587 Atomic orbital electron populations 1.21712 0.95680 0.99939 1.01639 1.18741 0.94809 0.96919 0.85797 0.91991 1.21185 1.31667 1.13147 0.88828 0.90642 1.24939 0.94952 0.95036 0.99118 1.69893 1.36690 1.22869 1.23678 0.86345 0.78648 0.79733 0.82231 1.19534 1.20903 1.20908 1.25299 0.76363 0.83184 0.84321 1.90476 1.36554 1.26881 1.86716 1.86660 1.70209 1.55600 1.15223 1.22489 0.97728 0.91982 0.84358 0.90549 1.21937 0.99454 0.97533 0.98413 1.21467 1.01344 0.97712 0.94730 1.21670 0.99678 0.96458 0.97628 1.21117 0.98864 0.95808 0.94659 0.91168 1.21858 1.01890 0.99159 0.97459 1.21167 0.98570 0.97165 0.93018 0.90665 1.21920 0.96526 1.00516 1.01547 0.95807 0.88666 0.95099 0.92804 0.91423 0.90879 0.91703 0.91883 0.91413 0.92088 0.92834 0.92654 0.92188 0.92807 0.91598 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.16 0.33 -2.84 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.20 16 3 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 4 C -0.51 -14.53 8.37 -34.44 -0.29 -14.81 16 5 H 0.08 2.25 6.76 -52.49 -0.35 1.89 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.46 11.10 7.22 36.01 0.26 11.36 16 13 O -0.52 -13.47 14.68 -18.75 -0.28 -13.74 16 14 O -0.36 -7.26 9.11 -39.24 -0.36 -7.62 16 15 C 0.09 1.48 2.13 -26.73 -0.06 1.43 16 16 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 17 C -0.14 -1.99 5.29 -26.73 -0.14 -2.14 16 18 C -0.11 -1.33 5.92 -26.73 -0.16 -1.48 16 19 C -0.12 -1.16 4.93 -26.73 -0.13 -1.29 16 20 C -0.09 -0.91 2.50 -90.62 -0.23 -1.14 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 22 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 23 C -0.08 -1.05 2.47 -90.62 -0.22 -1.28 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 C -0.15 -1.79 8.00 37.16 0.30 -1.49 16 26 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.02 6.43 -51.93 -0.33 0.69 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 39 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 40 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 41 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -29.52 314.60 -7.45 -36.97 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.81 Total: -0.71 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.36 Total: -11.85 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.63 Total: -21.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.52 -7.45 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850927765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.740 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds