Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47122 * 2 1 4 4 C 1.50697 * 109.47436 * 240.00321 * 2 1 3 5 5 H 1.08001 * 120.00408 * 240.00015 * 4 2 1 6 6 C 1.37878 * 120.00328 * 59.99581 * 4 2 1 7 7 N 1.31519 * 119.99775 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00627 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46772 * 359.97438 * 8 6 4 10 10 H 1.48489 * 109.47241 * 119.99894 * 8 6 4 11 11 H 1.48501 * 109.46997 * 240.00702 * 8 6 4 12 12 C 1.50702 * 109.47082 * 119.99886 * 2 1 3 13 13 O 1.20824 * 119.99533 * 120.00220 * 12 2 1 14 14 O 1.34222 * 120.00440 * 300.00527 * 12 2 1 15 15 C 1.45194 * 117.00395 * 179.97438 * 14 12 2 16 16 H 1.08998 * 109.46869 * 30.00435 * 15 14 12 17 17 C 1.52997 * 109.47339 * 269.99953 * 15 14 12 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 15 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 15 20 20 C 1.53002 * 109.46891 * 299.99597 * 19 18 17 21 21 H 1.09001 * 109.47142 * 300.00176 * 20 19 18 22 22 C 1.52996 * 109.46891 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.46978 * 60.00410 * 20 19 18 24 24 H 1.09000 * 109.47140 * 179.97438 * 23 20 19 25 25 C 1.53002 * 109.47415 * 59.99902 * 23 20 19 26 26 H 1.08997 * 109.47660 * 299.99779 * 1 2 3 27 27 H 1.09005 * 109.47321 * 60.00358 * 1 2 3 28 28 H 1.09006 * 109.47072 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00158 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47153 * 59.99705 * 17 15 14 31 31 H 1.09001 * 109.46832 * 299.99896 * 17 15 14 32 32 H 1.09004 * 109.46724 * 180.02562 * 18 17 15 33 33 H 1.09001 * 109.47194 * 299.99650 * 18 17 15 34 34 H 1.08992 * 109.47554 * 59.99639 * 19 18 17 35 35 H 1.09004 * 109.47108 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47261 * 60.00575 * 22 20 19 37 37 H 1.09004 * 109.47368 * 180.02562 * 22 20 19 38 38 H 1.09001 * 109.47372 * 300.00036 * 22 20 19 39 39 H 1.08992 * 109.47063 * 59.99950 * 25 23 20 40 40 H 1.08996 * 109.47407 * 180.02562 * 25 23 20 41 41 H 1.09004 * 109.46733 * 299.99664 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1467 -2.2868 -3.6038 10 1 1.1663 -1.5865 -4.8161 11 1 3.1467 -0.1871 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9864 3.5896 16 1 3.1795 -1.4442 3.3238 17 6 1.2309 -2.0768 3.9898 18 6 1.7772 -2.8504 5.1915 19 6 1.9817 -1.8909 6.3655 20 6 2.9777 -0.8005 5.9653 21 1 3.9306 -1.2584 5.7000 22 6 3.1817 0.1594 7.1391 23 6 2.4314 -0.0269 4.7637 24 1 3.1407 0.7502 4.4789 25 6 1.0938 0.6159 5.1361 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7095 1.1619 -3.4844 30 1 1.0847 -2.7602 3.1532 31 1 0.2781 -1.6189 4.2555 32 1 1.0679 -3.6275 5.4762 33 1 2.7301 -3.3083 4.9261 34 1 1.0289 -1.4330 6.6308 35 1 2.3705 -2.4421 7.2217 36 1 3.5708 -0.3913 7.9955 37 1 3.8909 0.9365 6.8540 38 1 2.2287 0.6173 7.4040 39 1 1.2396 1.2994 5.9725 40 1 0.7044 1.1666 4.2799 41 1 0.3843 -0.1610 5.4211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850927765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -139.394965 kcal Electronic energy + Delta-G solvation = -19888.909792 eV Core-core repulsion = 16959.813545 eV Total energy + Delta-G solvation = -2929.096247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70653 -39.95918 -37.12541 -35.93354 -33.64083 -32.80277 -31.94014 -28.30521 -27.30979 -26.72036 -25.24371 -23.12970 -22.59822 -21.18834 -19.49502 -18.62217 -18.05163 -17.54244 -16.81055 -16.61319 -16.23095 -15.64952 -15.24701 -14.84065 -14.64298 -14.20733 -14.01641 -13.62316 -13.46045 -13.27305 -13.00627 -12.90384 -12.74274 -12.64142 -12.59657 -12.50188 -12.30116 -12.09336 -12.06356 -11.68135 -11.61879 -11.39832 -11.16274 -11.09898 -10.91715 -10.77343 -10.54087 -8.21787 -6.35115 1.39237 1.40764 1.46202 1.53988 1.93384 2.42844 3.07940 3.60710 3.62730 3.83180 3.97478 4.09673 4.12948 4.33071 4.37886 4.44326 4.55183 4.66296 4.69108 4.71413 4.77151 4.88105 4.89819 4.99647 5.00415 5.03647 5.07570 5.13968 5.22686 5.25201 5.31855 5.38888 5.41864 5.46873 5.56180 5.66871 5.70054 5.87235 6.09051 6.71495 7.08166 7.33830 8.84985 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040845 B = 0.004834 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.356407 B = 5790.725049 C = 5992.310189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.272 1.272 12 C 0.471 3.529 13 O -0.546 6.546 14 O -0.355 6.355 15 C 0.081 3.919 16 H 0.054 0.946 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.083 4.083 21 H 0.063 0.937 22 C -0.142 4.142 23 C -0.078 4.078 24 H 0.066 0.934 25 C -0.145 4.145 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.268 0.732 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 -1.557 19.207 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.197 1.197 12 C 0.316 3.684 13 O -0.436 6.436 14 O -0.273 6.273 15 C 0.026 3.974 16 H 0.072 0.928 17 C -0.171 4.171 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.102 4.102 21 H 0.082 0.918 22 C -0.199 4.199 23 C -0.096 4.096 24 H 0.084 0.916 25 C -0.202 4.202 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.096 -1.731 19.085 19.164 hybrid contribution 0.534 -0.505 -1.374 1.558 sum 0.629 -2.236 17.711 17.863 Atomic orbital electron populations 1.21531 0.94321 0.99753 1.01938 1.18670 0.95947 0.96001 0.86362 0.93412 1.21272 1.32578 1.13211 0.90590 0.92802 1.25648 0.94871 0.95662 1.01560 1.69967 1.36675 1.23369 1.24708 0.85414 0.78416 0.78500 0.78789 1.20254 1.19625 1.19732 1.24829 0.75816 0.82502 0.85218 1.90454 1.37757 1.28004 1.87390 1.86605 1.69839 1.55811 1.15009 1.22942 0.97138 0.93395 0.83911 0.92752 1.21938 0.99581 0.96632 0.98906 1.21478 1.01264 0.98183 0.93930 1.21674 1.00041 0.95880 0.97334 1.21129 0.98668 0.96272 0.94130 0.91805 1.21831 1.02450 0.98782 0.96871 1.21227 0.99366 0.96517 0.92504 0.91555 1.21906 0.95722 1.00964 1.01563 0.93331 0.90364 0.95406 0.92221 0.94367 0.89868 0.89863 0.92602 0.90353 0.89768 0.91214 0.92814 0.91343 0.90350 0.93735 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.90 71.98 0.64 -5.08 16 2 C 0.05 2.62 2.74 -12.29 -0.03 2.59 16 3 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 4 C -0.54 -31.54 8.37 25.60 0.21 -31.33 16 5 H 0.05 3.33 6.76 -2.91 -0.02 3.31 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -51.23 11.32 21.45 0.24 -50.99 16 8 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.47 23.33 7.22 71.24 0.51 23.85 16 13 O -0.55 -29.57 14.68 21.97 0.32 -29.25 16 14 O -0.36 -14.70 9.11 -51.34 -0.47 -15.17 16 15 C 0.08 2.70 2.13 30.60 0.07 2.76 16 16 H 0.05 2.05 7.16 -2.39 -0.02 2.03 16 17 C -0.13 -3.86 5.29 30.59 0.16 -3.70 16 18 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 19 C -0.11 -1.86 4.93 30.59 0.15 -1.71 16 20 C -0.08 -1.58 2.50 -10.80 -0.03 -1.61 16 21 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 22 C -0.14 -2.03 8.84 71.98 0.64 -1.39 16 23 C -0.08 -1.95 2.47 -10.79 -0.03 -1.97 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 C -0.14 -3.20 8.00 71.98 0.58 -2.63 16 26 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 27 H 0.08 4.08 6.07 -2.38 -0.01 4.07 16 28 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 2.22 6.43 -2.39 -0.02 2.21 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.18 6.43 -2.39 -0.02 1.17 16 35 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 39 H 0.08 1.36 6.43 -2.39 -0.02 1.34 16 40 H 0.04 1.17 7.68 -2.39 -0.02 1.16 16 41 H 0.07 1.38 4.81 -2.39 -0.01 1.37 16 Total: -1.00 -64.50 314.60 6.62 -57.88 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.99 Total: 11.55 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 3.50 Total: -20.70 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.24 Total: -50.99 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.15 Total: -44.41 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.50 6.62 -57.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850927765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.517 kcal (2) G-P(sol) polarization free energy of solvation -64.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds