Wall clock time and date at job start Mon Mar 30 2020 06:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99506 * 2 1 3 5 5 H 1.08003 * 119.99963 * 239.99738 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47183 * 60.00274 * 8 6 4 10 10 H 1.48496 * 109.47425 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47216 * 300.00267 * 8 6 4 12 12 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 13 13 O 1.20818 * 120.00197 * 119.72210 * 12 2 1 14 14 O 1.34230 * 119.99763 * 299.99723 * 12 2 1 15 15 C 1.45198 * 117.00173 * 179.97438 * 14 12 2 16 16 H 1.08995 * 109.47027 * 29.99963 * 15 14 12 17 17 C 1.53003 * 109.46946 * 270.00291 * 15 14 12 18 18 C 1.53005 * 109.46827 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.46872 * 60.00000 * 18 17 15 20 20 C 1.52994 * 109.47334 * 299.99771 * 19 18 17 21 21 C 1.53007 * 109.47166 * 300.00095 * 20 19 18 22 22 C 1.52996 * 109.47242 * 180.02562 * 20 19 18 23 23 C 1.52995 * 109.47327 * 60.00302 * 20 19 18 24 24 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 27 27 H 0.96992 * 120.00038 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46818 * 299.99445 * 17 15 14 29 29 H 1.08999 * 109.47362 * 60.00092 * 17 15 14 30 30 H 1.08995 * 109.47280 * 299.99755 * 18 17 15 31 31 H 1.08996 * 109.46730 * 179.97438 * 18 17 15 32 32 H 1.08999 * 109.46771 * 179.97438 * 19 18 17 33 33 H 1.09000 * 109.47019 * 60.00128 * 19 18 17 34 34 H 1.08999 * 109.47363 * 179.97438 * 21 20 19 35 35 H 1.08999 * 109.47152 * 300.00186 * 21 20 19 36 36 H 1.09008 * 109.46516 * 59.99906 * 21 20 19 37 37 H 1.09003 * 109.47272 * 299.99712 * 22 20 19 38 38 H 1.08999 * 109.47507 * 60.00193 * 22 20 19 39 39 H 1.09009 * 109.47300 * 180.02562 * 22 20 19 40 40 H 1.08999 * 109.47596 * 180.02562 * 23 20 19 41 41 H 1.09003 * 109.47531 * 59.99628 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3224 -1.1198 -4.0078 9 1 1.8279 -2.5201 -4.0080 10 1 1.8278 -0.4197 -5.2204 11 1 3.8074 -1.1193 -4.0076 12 6 2.0324 -0.7104 1.2305 13 8 2.7228 -1.6956 1.1197 14 8 1.7081 -0.2517 2.4496 15 6 2.2268 -0.9861 3.5897 16 1 3.1795 -1.4441 3.3240 17 6 1.2308 -2.0765 3.9899 18 6 1.7776 -2.8508 5.1910 19 6 1.9832 -1.8918 6.3653 20 6 2.9791 -0.8015 5.9651 21 6 4.3164 -1.4444 5.5915 22 6 3.1852 0.1571 7.1396 23 6 2.4324 -0.0272 4.7641 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7089 1.1611 -3.4844 28 1 0.2780 -1.6184 4.2557 29 1 1.0846 -2.7599 3.1535 30 1 2.7302 -3.3088 4.9248 31 1 1.0679 -3.6272 5.4763 32 1 2.3724 -2.4435 7.2210 33 1 1.0306 -1.4338 6.6314 34 1 5.0258 -0.6677 5.3059 35 1 4.7059 -1.9960 6.4471 36 1 4.1698 -2.1276 4.7548 37 1 2.2327 0.6152 7.4061 38 1 3.5750 -0.3947 7.9949 39 1 3.8944 0.9342 6.8543 40 1 3.1421 0.7493 4.4787 41 1 1.4797 0.4308 5.0302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851081571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:07 Heat of formation + Delta-G solvation = -140.742478 kcal Electronic energy + Delta-G solvation = -19791.419578 eV Core-core repulsion = 16862.264898 eV Total energy + Delta-G solvation = -2929.154680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67785 -40.03883 -37.26163 -35.93091 -33.90041 -32.70319 -31.12995 -28.24309 -27.34181 -27.28119 -25.39316 -23.38652 -22.44232 -21.32787 -19.37326 -18.63786 -17.99679 -17.57369 -16.82372 -16.43901 -15.79880 -15.69340 -15.28874 -14.87501 -14.68746 -14.35489 -14.11658 -13.71640 -13.48532 -13.02919 -12.93144 -12.84952 -12.83072 -12.67227 -12.62129 -12.43945 -12.31576 -12.15028 -12.06196 -11.92355 -11.60820 -11.55285 -11.16998 -11.07564 -10.92198 -10.83693 -10.53730 -8.21108 -6.34703 1.41059 1.42491 1.45987 1.51281 1.92355 2.43073 3.08610 3.59303 3.65246 3.79796 3.99816 4.05727 4.11697 4.30724 4.33664 4.40837 4.54892 4.64417 4.66023 4.77574 4.82082 4.88460 4.93428 4.93605 5.00770 5.02999 5.04631 5.08649 5.16416 5.18971 5.28592 5.38621 5.41064 5.46089 5.54155 5.59427 5.70247 5.86980 6.08999 6.71272 7.07315 7.34038 8.85315 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040359 B = 0.004677 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.608707 B = 5984.902647 C = 6078.216978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.274 1.274 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.362 6.362 15 C 0.074 3.926 16 H 0.064 0.936 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.058 4.058 21 C -0.151 4.151 22 C -0.135 4.135 23 C -0.099 4.099 24 H 0.078 0.922 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.269 0.731 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.331 -2.358 19.192 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.434 6.434 14 O -0.279 6.279 15 C 0.019 3.981 16 H 0.082 0.918 17 C -0.170 4.170 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.058 4.058 21 C -0.208 4.208 22 C -0.192 4.192 23 C -0.136 4.136 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.454 -2.529 19.068 19.290 hybrid contribution 0.410 -0.452 -1.311 1.446 sum 1.864 -2.981 17.757 18.102 Atomic orbital electron populations 1.21538 0.94364 0.99765 1.01946 1.18675 0.95922 0.96048 0.86369 0.93392 1.21213 1.32735 1.13293 0.90555 0.92703 1.25650 0.94862 0.95653 1.01562 1.69954 1.36586 1.23340 1.24835 0.85519 0.78707 0.78666 0.78218 1.19889 1.19692 1.19949 1.24816 0.75777 0.82576 0.85111 1.90447 1.37844 1.27744 1.87352 1.86599 1.70002 1.56081 1.15262 1.23010 0.97526 0.93593 0.83922 0.91823 1.21915 0.99261 0.96796 0.98988 1.21529 1.01438 0.98192 0.93856 1.21645 0.99344 0.95827 0.97428 1.20522 0.95421 0.95762 0.94132 1.22041 0.96389 1.00641 1.01709 1.21808 1.02250 0.98531 0.96635 1.21690 1.02487 0.97038 0.92411 0.90308 0.95391 0.93383 0.92204 0.90402 0.94243 0.92033 0.89966 0.89594 0.90822 0.92983 0.90643 0.93844 0.91849 0.90955 0.92675 0.91788 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.90 71.98 0.64 -5.14 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.57 16 3 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 4 C -0.54 -31.56 8.37 25.60 0.21 -31.34 16 5 H 0.05 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -51.28 11.32 21.45 0.24 -51.03 16 8 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.47 23.40 7.22 71.24 0.51 23.91 16 13 O -0.54 -29.28 14.68 21.99 0.32 -28.96 16 14 O -0.36 -15.13 9.78 -51.41 -0.50 -15.63 16 15 C 0.07 2.46 2.18 30.60 0.07 2.53 16 16 H 0.06 2.36 5.44 -2.39 -0.01 2.35 16 17 C -0.13 -3.85 5.56 30.60 0.17 -3.68 16 18 C -0.11 -2.41 5.65 30.60 0.17 -2.23 16 19 C -0.11 -1.76 4.73 30.59 0.14 -1.62 16 20 C -0.06 -1.10 0.77 -52.18 -0.04 -1.14 16 21 C -0.15 -3.02 7.78 71.98 0.56 -2.46 16 22 C -0.14 -1.95 8.47 71.98 0.61 -1.34 16 23 C -0.10 -2.49 4.39 30.59 0.13 -2.36 16 24 H 0.08 4.12 6.07 -2.39 -0.01 4.11 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.39 6.43 -2.39 -0.02 1.38 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 1.04 4.81 -2.38 -0.01 1.03 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.09 318.63 6.68 -57.42 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.98 Total: 12.19 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 3.60 Total: -20.56 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.24 Total: -51.03 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.18 Total: -44.59 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.09 6.68 -57.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851081571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.326 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds