Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 5 5 H 1.08002 * 119.99865 * 239.99991 * 4 2 1 6 6 C 1.37876 * 119.99925 * 60.00083 * 4 2 1 7 7 N 1.31512 * 120.00389 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99821 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46850 * 59.99963 * 8 6 4 10 10 H 1.48498 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47393 * 300.00356 * 8 6 4 12 12 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 13 13 O 1.20822 * 119.99958 * 120.00049 * 12 2 1 14 14 O 1.34234 * 120.00068 * 300.00240 * 12 2 1 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 2 16 16 H 1.08997 * 109.47356 * 330.00219 * 15 14 12 17 17 C 1.53005 * 109.46901 * 90.00275 * 15 14 12 18 18 C 1.53002 * 109.47039 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46627 * 299.99525 * 18 17 15 20 20 C 1.52994 * 109.47327 * 60.00329 * 19 18 17 21 21 C 1.52996 * 109.47507 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47310 * 59.99770 * 20 19 18 23 23 C 1.53000 * 109.47051 * 209.99593 * 15 14 12 24 24 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 25 25 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 27 27 H 0.96998 * 120.00138 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46779 * 299.99615 * 17 15 14 29 29 H 1.08997 * 109.47161 * 59.99824 * 17 15 14 30 30 H 1.08994 * 109.47164 * 180.02562 * 18 17 15 31 31 H 1.09002 * 109.47487 * 59.99239 * 18 17 15 32 32 H 1.09002 * 109.46954 * 300.00041 * 19 18 17 33 33 H 1.09003 * 109.46767 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47714 * 180.02562 * 21 20 19 35 35 H 1.09008 * 109.47099 * 300.00184 * 21 20 19 36 36 H 1.08997 * 109.47195 * 59.99994 * 21 20 19 37 37 H 1.09001 * 109.47252 * 300.00147 * 22 20 19 38 38 H 1.09003 * 109.47127 * 59.99923 * 22 20 19 39 39 H 1.09003 * 109.47627 * 180.02562 * 22 20 19 40 40 H 1.08997 * 109.47552 * 300.00507 * 23 15 14 41 41 H 1.09003 * 109.46704 * 60.00628 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0080 10 1 1.8279 -0.4192 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2518 2.4497 15 6 2.2267 -0.9863 3.5897 16 1 2.3402 -2.0373 3.3237 17 6 3.5870 -0.4119 3.9904 18 6 4.1338 -1.1863 5.1914 19 6 3.1609 -1.0600 6.3655 20 6 1.8007 -1.6343 5.9648 21 6 0.8280 -1.5086 7.1390 22 6 1.9600 -3.1093 5.5909 23 6 1.2537 -0.8595 4.7636 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7090 1.1614 -3.4844 28 1 4.2801 -0.5023 3.1541 29 1 3.4735 0.6390 4.2564 30 1 5.1026 -0.7768 5.4771 31 1 4.2473 -2.2372 4.9250 32 1 3.0474 -0.0091 6.6318 33 1 3.5507 -1.6113 7.2212 34 1 -0.1410 -1.9182 6.8538 35 1 1.2178 -2.0606 7.9944 36 1 0.7143 -0.4579 7.4058 37 1 2.6530 -3.1994 4.7545 38 1 2.3496 -3.6610 6.4465 39 1 0.9910 -3.5185 5.3050 40 1 1.1402 0.1914 5.0296 41 1 0.2846 -1.2687 4.4781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851081573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -126.192922 kcal Electronic energy + Delta-G solvation = -19787.113011 eV Core-core repulsion = 16858.589247 eV Total energy + Delta-G solvation = -2928.523764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15762 -38.69642 -35.55195 -33.84582 -32.85809 -30.75785 -29.85034 -27.43499 -26.40627 -25.17698 -23.60931 -22.19994 -21.07886 -19.63579 -18.36587 -16.70012 -16.04555 -15.87383 -15.27445 -14.82886 -14.71247 -14.40661 -13.98063 -13.63261 -13.31185 -12.86785 -12.66414 -12.37682 -12.16277 -11.97170 -11.63020 -11.50979 -11.44740 -11.03087 -11.01672 -10.98883 -10.79255 -10.66947 -10.57069 -10.44946 -10.27835 -10.05391 -9.99358 -9.64044 -9.02529 -9.00932 -8.41912 -6.07891 -4.13173 3.33638 3.36436 3.38417 3.39851 3.56866 4.42746 4.56897 4.64451 4.75950 5.05625 5.11136 5.25195 5.29377 5.31637 5.42040 5.46186 5.57055 5.58428 5.63519 5.75997 5.86118 5.87881 5.93647 6.00121 6.03096 6.16981 6.20328 6.29499 6.36824 6.37875 6.53072 6.69801 6.91298 6.92448 7.34126 7.47989 7.77278 7.97584 8.17929 8.90858 8.98743 9.52114 10.99516 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040221 B = 0.004731 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.979308 B = 5916.695899 C = 6132.689178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.512 4.512 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.464 3.536 13 O -0.519 6.519 14 O -0.362 6.362 15 C 0.083 3.917 16 H 0.082 0.918 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.103 4.103 24 H 0.095 0.905 25 H 0.030 0.970 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -2.509 17.472 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.309 3.691 13 O -0.406 6.406 14 O -0.281 6.281 15 C 0.027 3.973 16 H 0.099 0.901 17 C -0.172 4.172 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.062 4.062 21 C -0.196 4.196 22 C -0.207 4.207 23 C -0.141 4.141 24 H 0.114 0.886 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.178 -2.699 17.324 17.572 hybrid contribution 0.398 -0.498 -0.833 1.049 sum 1.575 -3.197 16.490 16.871 Atomic orbital electron populations 1.21722 0.95703 0.99958 1.01665 1.18737 0.94811 0.96924 0.85761 0.91962 1.21098 1.31854 1.13192 0.88840 0.90743 1.24933 0.94937 0.95021 0.99095 1.69871 1.36564 1.22804 1.23896 0.86444 0.79283 0.79673 0.81386 1.20108 1.21220 1.20112 1.25297 0.76457 0.83060 0.84271 1.90470 1.36541 1.26884 1.86706 1.86663 1.70174 1.55857 1.15369 1.22564 0.93106 0.97090 0.84503 0.90051 1.21916 0.96489 1.00350 0.98466 1.21528 0.98338 1.00902 0.94700 1.21639 0.94353 1.01005 0.97683 1.20507 0.95343 0.95584 0.94749 1.21840 0.98873 1.01730 0.97191 1.22030 1.02177 0.94867 1.01620 1.21636 0.98393 1.01184 0.92865 0.88631 0.95075 0.95806 0.92680 0.91347 0.91247 0.91704 0.91469 0.91778 0.91934 0.92527 0.92656 0.92573 0.91814 0.92700 0.92556 0.90957 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.90 37.16 0.33 -2.88 16 2 C 0.06 1.47 2.74 -92.92 -0.25 1.22 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.58 8.37 -34.44 -0.29 -14.87 16 5 H 0.07 2.20 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.46 11.18 7.22 36.01 0.26 11.45 16 13 O -0.52 -13.44 14.68 -18.75 -0.28 -13.71 16 14 O -0.36 -7.46 9.78 -39.27 -0.38 -7.85 16 15 C 0.08 1.37 2.18 -26.73 -0.06 1.31 16 16 H 0.08 1.46 5.44 -51.93 -0.28 1.18 16 17 C -0.13 -1.98 5.56 -26.73 -0.15 -2.13 16 18 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 19 C -0.11 -1.09 4.73 -26.73 -0.13 -1.22 16 20 C -0.06 -0.65 0.77 -154.49 -0.12 -0.77 16 21 C -0.14 -1.23 8.47 37.16 0.31 -0.92 16 22 C -0.15 -1.61 7.78 37.16 0.29 -1.33 16 23 C -0.10 -1.36 4.40 -26.70 -0.12 -1.48 16 24 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.78 4.81 -51.93 -0.25 0.53 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -29.54 318.63 -7.43 -36.97 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.01 Total: -0.90 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.16 Total: -11.50 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.63 Total: -24.48 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.66 Total: -21.56 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.54 -7.43 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851081573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.225 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds