Wall clock time and date at job start Mon Mar 30 2020 06:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 5 5 H 1.08002 * 119.99865 * 239.99991 * 4 2 1 6 6 C 1.37876 * 119.99925 * 60.00083 * 4 2 1 7 7 N 1.31512 * 120.00389 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99821 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46850 * 59.99963 * 8 6 4 10 10 H 1.48498 * 109.47022 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47393 * 300.00356 * 8 6 4 12 12 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 13 13 O 1.20822 * 119.99958 * 120.00049 * 12 2 1 14 14 O 1.34234 * 120.00068 * 300.00240 * 12 2 1 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 2 16 16 H 1.08997 * 109.47356 * 330.00219 * 15 14 12 17 17 C 1.53005 * 109.46901 * 90.00275 * 15 14 12 18 18 C 1.53002 * 109.47039 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46627 * 299.99525 * 18 17 15 20 20 C 1.52994 * 109.47327 * 60.00329 * 19 18 17 21 21 C 1.52996 * 109.47507 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47310 * 59.99770 * 20 19 18 23 23 C 1.53000 * 109.47051 * 209.99593 * 15 14 12 24 24 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 25 25 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 27 27 H 0.96998 * 120.00138 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46779 * 299.99615 * 17 15 14 29 29 H 1.08997 * 109.47161 * 59.99824 * 17 15 14 30 30 H 1.08994 * 109.47164 * 180.02562 * 18 17 15 31 31 H 1.09002 * 109.47487 * 59.99239 * 18 17 15 32 32 H 1.09002 * 109.46954 * 300.00041 * 19 18 17 33 33 H 1.09003 * 109.46767 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47714 * 180.02562 * 21 20 19 35 35 H 1.09008 * 109.47099 * 300.00184 * 21 20 19 36 36 H 1.08997 * 109.47195 * 59.99994 * 21 20 19 37 37 H 1.09001 * 109.47252 * 300.00147 * 22 20 19 38 38 H 1.09003 * 109.47127 * 59.99923 * 22 20 19 39 39 H 1.09003 * 109.47627 * 180.02562 * 22 20 19 40 40 H 1.08997 * 109.47552 * 300.00507 * 23 15 14 41 41 H 1.09003 * 109.46704 * 60.00628 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0080 10 1 1.8279 -0.4192 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2518 2.4497 15 6 2.2267 -0.9863 3.5897 16 1 2.3402 -2.0373 3.3237 17 6 3.5870 -0.4119 3.9904 18 6 4.1338 -1.1863 5.1914 19 6 3.1609 -1.0600 6.3655 20 6 1.8007 -1.6343 5.9648 21 6 0.8280 -1.5086 7.1390 22 6 1.9600 -3.1093 5.5909 23 6 1.2537 -0.8595 4.7636 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7090 1.1614 -3.4844 28 1 4.2801 -0.5023 3.1541 29 1 3.4735 0.6390 4.2564 30 1 5.1026 -0.7768 5.4771 31 1 4.2473 -2.2372 4.9250 32 1 3.0474 -0.0091 6.6318 33 1 3.5507 -1.6113 7.2212 34 1 -0.1410 -1.9182 6.8538 35 1 1.2178 -2.0606 7.9944 36 1 0.7143 -0.4579 7.4058 37 1 2.6530 -3.1994 4.7545 38 1 2.3496 -3.6610 6.4465 39 1 0.9910 -3.5185 5.3050 40 1 1.1402 0.1914 5.0296 41 1 0.2846 -1.2687 4.4781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851081573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:09 Heat of formation + Delta-G solvation = -140.781745 kcal Electronic energy + Delta-G solvation = -19787.745629 eV Core-core repulsion = 16858.589247 eV Total energy + Delta-G solvation = -2929.156383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67651 -40.03706 -37.26172 -35.93177 -33.90421 -32.69748 -31.13202 -28.24134 -27.32393 -27.29798 -25.39537 -23.40800 -22.39184 -21.36858 -19.36271 -18.60790 -17.99394 -17.58628 -16.87781 -16.48264 -15.73256 -15.63189 -15.29322 -14.83880 -14.76490 -14.43786 -14.03121 -13.63284 -13.58959 -13.00813 -12.93512 -12.83296 -12.80843 -12.72584 -12.62216 -12.44069 -12.30261 -12.14521 -12.06331 -11.92535 -11.61393 -11.55039 -11.16212 -11.08481 -10.93201 -10.82411 -10.53915 -8.21103 -6.34711 1.41058 1.42484 1.45956 1.51285 1.92347 2.43070 3.08625 3.59271 3.65113 3.79835 3.99932 4.05596 4.11612 4.30467 4.33443 4.40757 4.54899 4.64329 4.66348 4.77275 4.81975 4.88657 4.93433 4.94308 5.00658 5.02770 5.04481 5.08577 5.16423 5.18717 5.28629 5.38243 5.41336 5.46260 5.54457 5.59195 5.70208 5.87032 6.09049 6.71259 7.07271 7.34041 8.85304 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040221 B = 0.004731 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.979308 B = 5916.695899 C = 6132.689178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.274 1.274 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.362 6.362 15 C 0.074 3.926 16 H 0.064 0.936 17 C -0.133 4.133 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.058 4.058 21 C -0.135 4.135 22 C -0.151 4.151 23 C -0.098 4.098 24 H 0.078 0.922 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.269 0.731 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -2.596 19.193 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.434 6.434 14 O -0.279 6.279 15 C 0.019 3.981 16 H 0.082 0.918 17 C -0.171 4.171 18 C -0.150 4.150 19 C -0.143 4.143 20 C -0.058 4.058 21 C -0.192 4.192 22 C -0.208 4.208 23 C -0.136 4.136 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.118 -2.769 19.069 19.301 hybrid contribution 0.413 -0.449 -1.311 1.446 sum 1.531 -3.218 17.757 18.111 Atomic orbital electron populations 1.21549 0.94382 0.99800 1.01974 1.18673 0.95933 0.96031 0.86371 0.93391 1.21212 1.32740 1.13299 0.90554 0.92702 1.25648 0.94859 0.95650 1.01560 1.69951 1.36584 1.23337 1.24837 0.85521 0.78702 0.78676 0.78222 1.19876 1.19689 1.19961 1.24816 0.75930 0.82415 0.85114 1.90448 1.37635 1.27956 1.87353 1.86601 1.69987 1.56091 1.15262 1.23010 0.95305 0.95806 0.83930 0.91789 1.21925 0.94743 1.01367 0.99021 1.21529 0.99578 1.00050 0.93842 1.21648 0.93211 1.01972 0.97424 1.20530 0.96348 0.94817 0.94139 1.21807 0.98230 1.02553 0.96633 1.22038 1.01558 0.95475 1.01702 1.21696 0.97266 1.02247 0.92391 0.90305 0.95353 0.93346 0.92201 0.94242 0.90419 0.89966 0.92015 0.90834 0.89588 0.92656 0.90969 0.91850 0.93852 0.90648 0.92970 0.90170 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.90 71.98 0.64 -5.18 16 2 C 0.05 2.61 2.74 -12.29 -0.03 2.58 16 3 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 4 C -0.54 -31.57 8.37 25.60 0.21 -31.36 16 5 H 0.05 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -51.28 11.32 21.45 0.24 -51.03 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.47 23.40 7.22 71.24 0.51 23.92 16 13 O -0.54 -29.29 14.68 21.98 0.32 -28.97 16 14 O -0.36 -15.13 9.78 -51.46 -0.50 -15.63 16 15 C 0.07 2.46 2.18 30.60 0.07 2.53 16 16 H 0.06 2.38 5.44 -2.39 -0.01 2.36 16 17 C -0.13 -3.89 5.56 30.60 0.17 -3.72 16 18 C -0.11 -2.40 5.65 30.60 0.17 -2.23 16 19 C -0.11 -1.76 4.73 30.59 0.14 -1.62 16 20 C -0.06 -1.10 0.77 -52.17 -0.04 -1.14 16 21 C -0.14 -1.94 8.47 71.98 0.61 -1.33 16 22 C -0.15 -3.01 7.78 71.98 0.56 -2.45 16 23 C -0.10 -2.48 4.40 30.61 0.13 -2.35 16 24 H 0.08 4.12 6.07 -2.39 -0.01 4.11 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 27 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.40 6.43 -2.39 -0.02 1.38 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.04 1.04 4.81 -2.39 -0.01 1.03 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.11 318.63 6.68 -57.43 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.98 Total: 12.24 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.60 Total: -20.62 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.24 Total: -51.03 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.18 Total: -44.60 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.11 6.68 -57.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851081573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.349 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds