Wall clock time and date at job start Mon Mar 30 2020 06:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47322 * 2 1 4 4 C 1.50707 * 109.47274 * 119.99617 * 2 1 3 5 5 H 1.07999 * 119.99513 * 119.99306 * 4 2 1 6 6 C 1.37877 * 120.00076 * 300.00315 * 4 2 1 7 7 N 1.31517 * 119.99871 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47063 * 89.99880 * 8 6 4 10 10 H 1.48496 * 109.46952 * 209.99655 * 8 6 4 11 11 H 1.48498 * 109.46749 * 329.99805 * 8 6 4 12 12 C 1.50699 * 109.47346 * 239.99496 * 2 1 3 13 13 O 1.20826 * 120.00339 * 240.00303 * 12 2 1 14 14 O 1.34236 * 119.99803 * 59.99912 * 12 2 1 15 15 C 1.45198 * 117.00183 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46782 * 30.00266 * 15 14 12 17 17 C 1.52996 * 109.47173 * 270.00138 * 15 14 12 18 18 C 1.53002 * 109.46891 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46978 * 60.00410 * 18 17 15 20 20 C 1.53006 * 109.47164 * 299.99874 * 19 18 17 21 21 C 1.52999 * 109.46623 * 299.99900 * 20 19 18 22 22 C 1.52992 * 109.47223 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47127 * 59.99836 * 20 19 18 24 24 H 1.09012 * 109.47113 * 300.00454 * 1 2 3 25 25 H 1.09005 * 109.47059 * 59.99959 * 1 2 3 26 26 H 1.08998 * 109.47288 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99612 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47554 * 299.99772 * 17 15 14 29 29 H 1.09004 * 109.47108 * 60.00023 * 17 15 14 30 30 H 1.09002 * 109.47097 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.47142 * 300.00176 * 18 17 15 32 32 H 1.09001 * 109.47375 * 59.99908 * 19 18 17 33 33 H 1.09000 * 109.47140 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.46716 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.47486 * 299.99829 * 21 20 19 36 36 H 1.09001 * 109.47362 * 60.00551 * 21 20 19 37 37 H 1.09001 * 109.47066 * 299.99881 * 22 20 19 38 38 H 1.08996 * 109.47747 * 59.99547 * 22 20 19 39 39 H 1.09002 * 109.47103 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.47153 * 180.02562 * 23 20 19 41 41 H 1.09001 * 109.46832 * 60.00321 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1202 4.0081 9 1 3.6296 -0.5457 4.4124 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5660 3.7121 12 6 2.0323 -0.7105 -1.2304 13 8 2.7269 -1.6929 -1.1195 14 8 1.7080 -0.2520 -2.4496 15 6 2.2267 -0.9865 -3.5896 16 1 2.3401 -2.0375 -3.3235 17 6 3.5870 -0.4122 -3.9903 18 6 4.1338 -1.1867 -5.1912 19 6 3.1610 -1.0604 -6.3653 20 6 1.8006 -1.6347 -5.9646 21 6 1.9599 -3.1097 -5.5907 22 6 0.8280 -1.5089 -7.1389 23 6 1.2538 -0.8602 -4.7637 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7094 1.1619 3.4844 28 1 3.4736 0.6387 -4.2564 29 1 4.2802 -0.5025 -3.1540 30 1 5.1031 -0.7778 -5.4765 31 1 4.2472 -2.2375 -4.9248 32 1 3.0475 -0.0095 -6.6318 33 1 3.5507 -1.6117 -7.2210 34 1 0.9909 -3.5187 -5.3048 35 1 2.3495 -3.6614 -6.4463 36 1 2.6529 -3.1997 -4.7542 37 1 0.7145 -0.4582 -7.4057 38 1 1.2177 -2.0608 -7.9942 39 1 -0.1410 -1.9185 -6.8535 40 1 0.2849 -1.2697 -4.4779 41 1 1.1404 0.1906 -5.0302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851081665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:15 Heat of formation + Delta-G solvation = -126.235989 kcal Electronic energy + Delta-G solvation = -19787.356724 eV Core-core repulsion = 16858.831092 eV Total energy + Delta-G solvation = -2928.525631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15865 -38.69752 -35.55171 -33.84636 -32.85930 -30.75821 -29.85082 -27.43526 -26.40697 -25.17843 -23.61035 -22.20042 -21.07991 -19.63584 -18.36561 -16.70053 -16.04786 -15.87557 -15.27458 -14.82907 -14.71210 -14.40581 -13.97840 -13.63113 -13.31246 -12.86866 -12.66697 -12.37731 -12.16351 -11.97220 -11.63526 -11.50997 -11.44835 -11.03825 -11.01232 -10.99025 -10.78325 -10.68105 -10.57148 -10.44407 -10.27069 -10.05312 -9.99426 -9.64037 -9.01420 -9.01188 -8.42378 -6.08188 -4.13329 3.31234 3.36671 3.38672 3.41639 3.57101 4.42706 4.56864 4.64422 4.75980 5.05606 5.11146 5.25052 5.29413 5.31634 5.42052 5.46197 5.57078 5.58448 5.63505 5.76005 5.86150 5.87838 5.93659 6.00116 6.03093 6.16976 6.20352 6.29498 6.36799 6.37879 6.53063 6.69754 6.91227 6.92349 7.34098 7.47911 7.77197 7.97567 8.17755 8.91075 8.98799 9.52042 10.99284 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040222 B = 0.004731 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.975323 B = 5916.779364 C = 6132.640030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.511 4.511 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.464 3.536 13 O -0.519 6.519 14 O -0.362 6.362 15 C 0.083 3.917 16 H 0.082 0.918 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.103 4.103 24 H 0.095 0.905 25 H 0.023 0.977 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 -2.524 -17.485 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.549 4.549 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.406 6.406 14 O -0.281 6.281 15 C 0.027 3.973 16 H 0.099 0.901 17 C -0.172 4.172 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.062 4.062 21 C -0.207 4.207 22 C -0.196 4.196 23 C -0.141 4.141 24 H 0.114 0.886 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.182 -2.722 -17.339 17.591 hybrid contribution 0.399 -0.478 0.840 1.045 sum 1.581 -3.200 -16.499 16.881 Atomic orbital electron populations 1.21721 0.95693 0.99968 1.01669 1.18743 0.94823 0.96930 0.85780 0.91961 1.21142 1.31752 1.13180 0.88826 0.90685 1.24938 0.94926 0.95047 0.99109 1.69884 1.36595 1.22868 1.23786 0.86389 0.78488 0.80178 0.81808 1.20548 1.21139 1.19699 1.25297 0.76460 0.83062 0.84268 1.90472 1.36540 1.26877 1.86703 1.86663 1.70176 1.55857 1.15368 1.22562 0.93104 0.97090 0.84507 0.90054 1.21914 0.96488 1.00350 0.98466 1.21527 0.98335 1.00906 0.94702 1.21638 0.94351 1.01006 0.97681 1.20499 0.95344 0.95588 0.94751 1.22030 1.02177 0.94868 1.01619 1.21838 0.98874 1.01731 0.97190 1.21626 0.98398 1.01187 0.92866 0.88633 0.95796 0.95064 0.92742 0.91248 0.91346 0.91705 0.91474 0.91779 0.91933 0.92558 0.92701 0.91813 0.92574 0.92654 0.92527 0.91202 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.90 37.15 0.33 -2.88 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.20 16 3 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 4 C -0.51 -14.56 8.37 -34.44 -0.29 -14.85 16 5 H 0.08 2.23 6.76 -52.49 -0.35 1.87 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.46 11.18 7.22 36.01 0.26 11.44 16 13 O -0.52 -13.44 14.68 -18.75 -0.28 -13.71 16 14 O -0.36 -7.46 9.78 -39.27 -0.38 -7.85 16 15 C 0.08 1.37 2.18 -26.73 -0.06 1.31 16 16 H 0.08 1.46 5.44 -51.93 -0.28 1.18 16 17 C -0.13 -1.98 5.56 -26.73 -0.15 -2.13 16 18 C -0.12 -1.35 5.65 -26.73 -0.15 -1.50 16 19 C -0.11 -1.09 4.73 -26.73 -0.13 -1.22 16 20 C -0.06 -0.65 0.77 -154.51 -0.12 -0.77 16 21 C -0.15 -1.61 7.78 37.16 0.29 -1.33 16 22 C -0.14 -1.23 8.47 37.15 0.31 -0.92 16 23 C -0.10 -1.36 4.39 -26.73 -0.12 -1.48 16 24 H 0.10 2.48 6.07 -51.92 -0.32 2.16 16 25 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.78 4.81 -51.93 -0.25 0.53 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -29.58 318.63 -7.43 -37.00 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.01 Total: -0.93 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.16 Total: -11.50 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.63 Total: -24.48 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.66 Total: -21.56 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.58 -7.43 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851081665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.231 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds