Wall clock time and date at job start Mon Mar 30 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47322 * 2 1 4 4 C 1.50707 * 109.47274 * 119.99617 * 2 1 3 5 5 H 1.07999 * 119.99513 * 119.99306 * 4 2 1 6 6 C 1.37877 * 120.00076 * 300.00315 * 4 2 1 7 7 N 1.31517 * 119.99871 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47063 * 89.99880 * 8 6 4 10 10 H 1.48496 * 109.46952 * 209.99655 * 8 6 4 11 11 H 1.48498 * 109.46749 * 329.99805 * 8 6 4 12 12 C 1.50699 * 109.47346 * 239.99496 * 2 1 3 13 13 O 1.20826 * 120.00339 * 240.00303 * 12 2 1 14 14 O 1.34236 * 119.99803 * 59.99912 * 12 2 1 15 15 C 1.45198 * 117.00183 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46782 * 30.00266 * 15 14 12 17 17 C 1.52996 * 109.47173 * 270.00138 * 15 14 12 18 18 C 1.53002 * 109.46891 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46978 * 60.00410 * 18 17 15 20 20 C 1.53006 * 109.47164 * 299.99874 * 19 18 17 21 21 C 1.52999 * 109.46623 * 299.99900 * 20 19 18 22 22 C 1.52992 * 109.47223 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47127 * 59.99836 * 20 19 18 24 24 H 1.09012 * 109.47113 * 300.00454 * 1 2 3 25 25 H 1.09005 * 109.47059 * 59.99959 * 1 2 3 26 26 H 1.08998 * 109.47288 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99612 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47554 * 299.99772 * 17 15 14 29 29 H 1.09004 * 109.47108 * 60.00023 * 17 15 14 30 30 H 1.09002 * 109.47097 * 180.02562 * 18 17 15 31 31 H 1.09001 * 109.47142 * 300.00176 * 18 17 15 32 32 H 1.09001 * 109.47375 * 59.99908 * 19 18 17 33 33 H 1.09000 * 109.47140 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.46716 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.47486 * 299.99829 * 21 20 19 36 36 H 1.09001 * 109.47362 * 60.00551 * 21 20 19 37 37 H 1.09001 * 109.47066 * 299.99881 * 22 20 19 38 38 H 1.08996 * 109.47747 * 59.99547 * 22 20 19 39 39 H 1.09002 * 109.47103 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.47153 * 180.02562 * 23 20 19 41 41 H 1.09001 * 109.46832 * 60.00321 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1202 4.0081 9 1 3.6296 -0.5457 4.4124 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5660 3.7121 12 6 2.0323 -0.7105 -1.2304 13 8 2.7269 -1.6929 -1.1195 14 8 1.7080 -0.2520 -2.4496 15 6 2.2267 -0.9865 -3.5896 16 1 2.3401 -2.0375 -3.3235 17 6 3.5870 -0.4122 -3.9903 18 6 4.1338 -1.1867 -5.1912 19 6 3.1610 -1.0604 -6.3653 20 6 1.8006 -1.6347 -5.9646 21 6 1.9599 -3.1097 -5.5907 22 6 0.8280 -1.5089 -7.1389 23 6 1.2538 -0.8602 -4.7637 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.7094 1.1619 3.4844 28 1 3.4736 0.6387 -4.2564 29 1 4.2802 -0.5025 -3.1540 30 1 5.1031 -0.7778 -5.4765 31 1 4.2472 -2.2375 -4.9248 32 1 3.0475 -0.0095 -6.6318 33 1 3.5507 -1.6117 -7.2210 34 1 0.9909 -3.5187 -5.3048 35 1 2.3495 -3.6614 -6.4463 36 1 2.6529 -3.1997 -4.7542 37 1 0.7145 -0.4582 -7.4057 38 1 1.2177 -2.0608 -7.9942 39 1 -0.1410 -1.9185 -6.8535 40 1 0.2849 -1.2697 -4.4779 41 1 1.1404 0.1906 -5.0302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851081665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:14 Heat of formation + Delta-G solvation = -140.863823 kcal Electronic energy + Delta-G solvation = -19787.991034 eV Core-core repulsion = 16858.831092 eV Total energy + Delta-G solvation = -2929.159942 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67686 -40.03900 -37.26179 -35.93263 -33.90537 -32.69816 -31.13233 -28.24172 -27.32469 -27.29959 -25.39636 -23.40872 -22.39246 -21.36880 -19.36247 -18.60978 -17.99656 -17.58786 -16.87820 -16.48116 -15.73091 -15.63052 -15.29350 -14.84032 -14.76661 -14.44084 -14.03121 -13.63353 -13.59375 -13.01021 -12.93678 -12.83375 -12.80441 -12.72421 -12.62594 -12.44011 -12.29659 -12.14557 -12.07274 -11.92464 -11.61400 -11.55054 -11.15524 -11.08306 -10.93325 -10.82402 -10.54053 -8.21433 -6.34897 1.40566 1.41255 1.45643 1.53067 1.92365 2.42977 3.08374 3.59259 3.65086 3.79889 3.99908 4.05580 4.11617 4.30464 4.33474 4.40773 4.54911 4.64351 4.66333 4.77282 4.81972 4.88670 4.93418 4.94252 5.00663 5.02795 5.04465 5.08588 5.16432 5.18719 5.28626 5.38224 5.41377 5.46276 5.54456 5.59208 5.70243 5.86967 6.08920 6.71423 7.07256 7.33961 8.85209 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040222 B = 0.004731 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.975323 B = 5916.779364 C = 6132.640030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.362 6.362 15 C 0.074 3.926 16 H 0.064 0.936 17 C -0.133 4.133 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.058 4.058 21 C -0.151 4.151 22 C -0.135 4.135 23 C -0.098 4.098 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.269 0.731 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 -2.577 -19.193 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.317 3.683 13 O -0.434 6.434 14 O -0.279 6.279 15 C 0.019 3.981 16 H 0.082 0.918 17 C -0.171 4.171 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.058 4.058 21 C -0.208 4.208 22 C -0.192 4.192 23 C -0.136 4.136 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.123 -2.756 -19.070 19.301 hybrid contribution 0.415 -0.440 1.315 1.447 sum 1.537 -3.196 -17.755 18.106 Atomic orbital electron populations 1.21548 0.94370 0.99814 1.01976 1.18678 0.95945 0.96036 0.86379 0.93380 1.21243 1.32652 1.13261 0.90551 0.92720 1.25652 0.94848 0.95672 1.01571 1.69962 1.36606 1.23394 1.24773 0.85461 0.78439 0.78702 0.78498 1.19781 1.19675 1.20104 1.24817 0.75930 0.82414 0.85113 1.90450 1.37641 1.27955 1.87352 1.86601 1.69988 1.56089 1.15259 1.23008 0.95305 0.95801 0.83936 0.91802 1.21923 0.94741 1.01369 0.99020 1.21528 0.99576 1.00051 0.93846 1.21647 0.93208 1.01974 0.97421 1.20523 0.96351 0.94819 0.94143 1.22038 1.01556 0.95480 1.01698 1.21805 0.98230 1.02555 0.96631 1.21686 0.97270 1.02253 0.92389 0.90312 0.93333 0.95335 0.92213 0.90416 0.94238 0.89964 0.92025 0.90832 0.89589 0.92974 0.90649 0.93857 0.91848 0.90969 0.92656 0.91738 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.90 71.98 0.64 -5.18 16 2 C 0.05 2.60 2.74 -12.29 -0.03 2.56 16 3 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 4 C -0.54 -31.52 8.37 25.60 0.21 -31.31 16 5 H 0.05 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -51.28 11.32 21.45 0.24 -51.04 16 8 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.47 23.41 7.22 71.24 0.51 23.92 16 13 O -0.54 -29.32 14.68 21.97 0.32 -29.00 16 14 O -0.36 -15.13 9.78 -51.47 -0.50 -15.63 16 15 C 0.07 2.46 2.18 30.59 0.07 2.53 16 16 H 0.06 2.37 5.44 -2.39 -0.01 2.36 16 17 C -0.13 -3.89 5.56 30.59 0.17 -3.72 16 18 C -0.11 -2.40 5.65 30.59 0.17 -2.23 16 19 C -0.11 -1.76 4.73 30.60 0.14 -1.62 16 20 C -0.06 -1.10 0.77 -52.18 -0.04 -1.14 16 21 C -0.15 -3.01 7.78 71.98 0.56 -2.45 16 22 C -0.14 -1.94 8.47 71.98 0.61 -1.33 16 23 C -0.10 -2.48 4.39 30.59 0.13 -2.35 16 24 H 0.08 4.12 6.07 -2.38 -0.01 4.10 16 25 H 0.05 2.06 8.11 -2.38 -0.02 2.05 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.39 6.43 -2.39 -0.02 1.38 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 1.04 4.81 -2.39 -0.01 1.03 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.21 318.63 6.68 -57.54 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.98 Total: 12.14 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.60 Total: -20.60 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.24 Total: -51.04 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.18 Total: -44.63 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.21 6.68 -57.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851081665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.329 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds