Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.34939 * 2 1 4 4 O 1.44312 * 110.38992 * 237.69846 * 2 1 3 5 Xx 1.43750 * 104.52034 * 264.84482 * 4 2 1 6 5 C 1.57000 * 127.54087 * 140.44024 * 5 4 2 7 6 C 1.52999 * 109.47036 * 359.94403 * 6 5 4 8 7 C 1.52999 * 109.47107 * 179.97438 * 7 6 5 9 8 C 1.53003 * 109.47126 * 179.97438 * 8 7 6 10 9 C 1.50700 * 109.47046 * 180.02562 * 9 8 7 11 10 H 1.08000 * 120.00169 * 0.02562 * 10 9 8 12 11 C 1.37874 * 119.99881 * 180.02562 * 10 9 8 13 12 N 1.31513 * 119.99955 * 180.02562 * 12 10 9 14 13 Si 1.86800 * 119.99983 * 359.97438 * 12 10 9 15 14 H 1.48502 * 109.47179 * 90.00524 * 14 12 10 16 15 H 1.48507 * 109.47201 * 210.00146 * 14 12 10 17 16 H 1.48497 * 109.47438 * 330.00370 * 14 12 10 18 17 O 1.43476 * 104.90305 * 320.39117 * 5 4 2 19 18 C 1.44312 * 104.66053 * 39.61644 * 18 5 4 20 19 C 1.53005 * 110.39288 * 217.51512 * 19 18 5 21 20 C 1.53008 * 110.49143 * 95.17468 * 19 18 5 22 21 H 1.09001 * 109.47002 * 59.29656 * 1 2 3 23 22 H 1.08993 * 109.46955 * 179.30093 * 1 2 3 24 23 H 1.09000 * 109.47050 * 299.29922 * 1 2 3 25 24 H 1.09001 * 109.47087 * 60.70015 * 3 2 1 26 25 H 1.08996 * 109.47106 * 180.69389 * 3 2 1 27 26 H 1.08994 * 109.47586 * 300.70065 * 3 2 1 28 27 H 1.09002 * 109.47182 * 119.94085 * 6 5 4 29 28 H 1.08999 * 109.46823 * 239.94387 * 6 5 4 30 29 H 1.09004 * 109.47326 * 300.00142 * 7 6 5 31 30 H 1.09000 * 109.47121 * 59.99791 * 7 6 5 32 31 H 1.08995 * 109.47425 * 300.00348 * 8 7 6 33 32 H 1.09005 * 109.46748 * 60.00404 * 8 7 6 34 33 H 1.08993 * 109.47099 * 300.00363 * 9 8 7 35 34 H 1.09000 * 109.46815 * 59.99993 * 9 8 7 36 35 H 0.97000 * 119.99788 * 179.97438 * 13 12 10 37 36 H 1.08998 * 109.47072 * 175.27861 * 20 19 18 38 37 H 1.09003 * 109.46961 * 295.27865 * 20 19 18 39 38 H 1.08997 * 109.46903 * 55.27572 * 20 19 18 40 39 H 1.09001 * 109.46543 * 304.66927 * 21 19 18 41 40 H 1.08999 * 109.46740 * 64.65831 * 21 19 18 42 41 H 1.08997 * 109.47410 * 184.66205 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 8 2.0329 -0.7229 -1.1434 5 6 2.0005 -3.4099 -1.3891 6 6 1.4083 -3.1286 -2.7716 7 6 1.1407 -4.4523 -3.4907 8 6 0.5479 -4.1710 -4.8729 9 6 0.2838 -5.4749 -5.5810 10 1 0.5152 -6.4105 -5.0937 11 6 -0.2532 -5.4732 -6.8508 12 7 -0.4842 -6.6110 -7.4686 13 14 -0.6541 -3.8549 -7.6933 14 1 0.5288 -3.3906 -8.4618 15 1 -1.8001 -4.0486 -8.6178 16 1 -1.0097 -2.8390 -6.6703 17 8 2.8254 -1.8646 0.6605 18 6 2.0674 -0.7725 1.2220 19 6 2.9732 0.1272 2.0653 20 6 0.9088 -1.3040 2.0683 21 1 -0.3633 0.5247 -0.8836 22 1 -0.3633 -1.0275 -0.0125 23 1 -0.3633 0.5029 0.8962 24 1 1.7169 1.9500 0.8962 25 1 3.1519 1.4178 -0.0124 26 1 1.6966 1.9576 -0.8836 27 1 2.9354 -3.9594 -1.4994 28 1 1.2965 -4.0037 -0.8062 29 1 0.4734 -2.5791 -2.6614 30 1 2.1123 -2.5347 -3.3544 31 1 2.0757 -5.0015 -3.6009 32 1 0.4368 -5.0465 -2.9080 33 1 -0.3872 -3.6221 -4.7623 34 1 1.2514 -3.5766 -5.4558 35 1 -0.8624 -6.6099 -8.3618 36 1 2.4060 0.9907 2.4125 37 1 3.3441 -0.4330 2.9237 38 1 3.8149 0.4646 1.4604 39 1 0.2965 -1.9747 1.4655 40 1 1.3049 -1.8467 2.9265 41 1 0.2998 -0.4695 2.4156 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200439897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = 49.608048 kcal Electronic energy + Delta-G solvation = -17761.219621 eV Core-core repulsion = 14954.889560 eV Total energy + Delta-G solvation = -2806.330061 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 243.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -36.81577 -36.09651 -34.82687 -31.02635 -30.56534 -28.17322 -27.52947 -26.44901 -26.41138 -24.10568 -22.27513 -20.74012 -20.14910 -19.22538 -16.66506 -15.75111 -15.48300 -14.72314 -13.96097 -13.87335 -13.56136 -13.43901 -12.99964 -12.71917 -12.38664 -12.05732 -11.60640 -11.59793 -11.55393 -11.31994 -11.16817 -10.87136 -10.82399 -10.76172 -10.62861 -10.49450 -10.46909 -10.18561 -10.03165 -9.28693 -9.15722 -9.12074 -8.83564 -6.26376 -6.12924 -5.54894 -5.18604 -3.88762 0.75494 1.87706 1.88499 2.14049 2.61813 2.69788 4.40929 4.86915 5.02516 5.26641 5.44041 5.67083 5.74651 5.83597 5.92159 6.06126 6.06966 6.22414 6.25554 6.56140 6.57474 6.61183 6.68147 6.72814 6.77722 6.83157 6.94980 6.98466 6.99575 7.05449 7.14068 7.22247 7.24482 7.38449 7.53187 7.72803 7.77054 8.33519 8.43229 9.56269 10.15641 Molecular weight = 243.17amu Principal moments of inertia in cm(-1) A = 0.036730 B = 0.003960 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.127382 B = 7069.148202 C = 7432.274835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 C -0.131 4.131 4 O -0.667 6.667 5 C 0.142 3.858 6 C -0.137 4.137 7 C -0.115 4.115 8 C -0.108 4.108 9 C -0.083 4.083 10 H 0.132 0.868 11 C -0.067 4.067 12 N -0.619 5.619 13 Si 0.933 3.067 14 H -0.243 1.243 15 H -0.254 1.254 16 H -0.232 1.232 17 O -0.683 6.683 18 C 0.123 3.877 19 C -0.131 4.131 20 C -0.145 4.145 21 H 0.022 0.978 22 H 0.038 0.962 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.330 0.670 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.022 0.978 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -6.858 -11.817 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.071 3.929 3 C -0.189 4.189 4 O -0.605 6.605 5 C 0.087 3.913 6 C -0.175 4.175 7 C -0.153 4.153 8 C -0.144 4.144 9 C -0.102 4.102 10 H 0.150 0.850 11 C -0.279 4.279 12 N -0.268 5.268 13 Si 0.750 3.250 14 H -0.166 1.166 15 H -0.178 1.178 16 H -0.154 1.154 17 O -0.621 6.621 18 C 0.072 3.928 19 C -0.189 4.189 20 C -0.203 4.203 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.333 -7.129 -12.119 15.421 hybrid contribution -0.524 0.737 -0.005 0.904 sum -6.858 -6.392 -12.124 15.326 Atomic orbital electron populations 1.22392 1.01769 0.98989 0.97123 1.21076 0.87775 0.88811 0.95254 1.22180 1.00398 0.98966 0.97341 1.94891 1.84429 1.49188 1.31961 1.30361 0.97120 0.76002 0.87862 1.21837 1.03359 0.96195 0.96088 1.21652 1.01296 0.97891 0.94413 1.21049 1.01765 0.95105 0.96440 1.25354 0.92160 0.99594 0.93070 0.85039 1.26717 0.99307 1.02985 0.98870 1.69885 1.13559 1.29266 1.14043 0.85609 0.81346 0.77265 0.80738 1.16639 1.17783 1.15403 1.94910 1.61116 1.45285 1.60833 1.21037 0.90089 0.92667 0.89017 1.22184 0.99982 0.98136 0.98558 1.22398 1.00358 0.98575 0.98985 0.95903 0.94247 0.95717 0.95376 0.93780 0.95616 0.91350 0.91687 0.90400 0.90250 0.91229 0.91291 0.88356 0.88674 0.85732 0.95370 0.95612 0.93821 0.94295 0.95876 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 7.78 37.16 0.29 -3.42 16 2 C 0.12 3.55 1.57 -89.97 -0.14 3.41 16 3 C -0.13 -3.45 7.78 37.16 0.29 -3.16 16 4 O -0.67 -21.71 13.69 -59.48 -0.81 -22.53 16 5 C 0.14 2.93 10.46 37.16 0.39 3.32 16 6 C -0.14 -2.30 5.23 -26.73 -0.14 -2.44 16 7 C -0.11 -1.31 5.15 -26.73 -0.14 -1.45 16 8 C -0.11 -1.07 4.04 -27.88 -0.11 -1.18 16 9 C -0.08 -0.80 9.66 -34.44 -0.33 -1.13 16 10 H 0.13 1.23 7.99 -52.49 -0.42 0.81 16 11 C -0.07 -0.66 5.47 -17.82 -0.10 -0.76 16 12 N -0.62 -6.63 13.96 55.43 0.77 -5.86 16 13 Si 0.93 8.24 27.47 -169.99 -4.67 3.57 16 14 H -0.24 -2.29 7.11 56.52 0.40 -1.89 16 15 H -0.25 -2.28 7.11 56.52 0.40 -1.88 16 16 H -0.23 -2.19 6.54 56.52 0.37 -1.82 16 17 O -0.68 -23.11 14.25 -59.48 -0.85 -23.96 16 18 C 0.12 3.63 1.57 -89.97 -0.14 3.49 16 19 C -0.13 -3.48 7.78 37.16 0.29 -3.19 16 20 C -0.15 -3.78 7.78 37.16 0.29 -3.49 16 21 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.04 1.00 6.71 -51.93 -0.35 0.65 16 23 H 0.02 0.56 6.90 -51.93 -0.36 0.20 16 24 H 0.03 0.65 6.91 -51.93 -0.36 0.29 16 25 H 0.04 1.18 6.71 -51.93 -0.35 0.83 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.96 7.20 -51.93 -0.37 0.59 16 34 H 0.10 0.90 7.57 -51.93 -0.39 0.51 16 35 H 0.33 2.87 8.31 -40.82 -0.34 2.53 16 36 H 0.03 0.66 6.85 -51.93 -0.36 0.30 16 37 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 1.18 6.77 -51.93 -0.35 0.83 16 39 H 0.04 1.00 6.76 -51.93 -0.35 0.65 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.58 6.85 -51.93 -0.36 0.22 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -38.54 331.33 -7.53 -46.06 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.41 Total: 7.71 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 0.44 Total: -9.99 kcal Atomic # 7 Polarization: -6.63 SS G_CDS: 0.77 Total: -5.86 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -1.66 Total: -46.49 kcal Atomic # 14 Polarization: 8.24 SS G_CDS: -4.67 Total: 3.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -38.54 -7.53 -46.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200439897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.672 kcal (2) G-P(sol) polarization free energy of solvation -38.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds