Wall clock time and date at job start Mon Mar 30 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47291 * 2 1 4 4 C 1.52996 * 109.47533 * 120.00469 * 2 1 3 5 5 N 1.46906 * 109.47401 * 182.07304 * 4 2 1 6 6 C 1.46897 * 111.00315 * 158.89415 * 5 4 2 7 7 C 1.50702 * 109.47057 * 288.11082 * 6 5 4 8 8 H 1.07996 * 119.99762 * 4.92770 * 7 6 5 9 9 C 1.37875 * 119.99915 * 184.93505 * 7 6 5 10 10 N 1.31519 * 119.99984 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00158 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46722 * 90.00266 * 11 9 7 13 13 H 1.48496 * 109.47172 * 210.00144 * 11 9 7 14 14 H 1.48501 * 109.47072 * 330.00468 * 11 9 7 15 15 C 1.46903 * 110.99627 * 282.84570 * 5 4 2 16 16 C 1.53003 * 109.46903 * 91.53482 * 15 5 4 17 17 C 1.53003 * 109.46895 * 184.62857 * 16 15 5 18 18 N 1.46897 * 109.47198 * 180.02562 * 17 16 15 19 19 C 1.46898 * 111.00179 * 179.97438 * 18 17 16 20 20 C 1.52996 * 117.49845 * 223.74316 * 19 18 17 21 21 C 1.53000 * 117.49901 * 155.08393 * 19 18 17 22 22 H 1.09003 * 109.46719 * 299.99347 * 1 2 3 23 23 H 1.08994 * 109.47158 * 59.99627 * 1 2 3 24 24 H 1.09001 * 109.47068 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47341 * 240.00228 * 2 1 3 26 26 H 1.09006 * 109.47036 * 64.87181 * 3 2 1 27 27 H 1.08999 * 109.47550 * 184.87393 * 3 2 1 28 28 H 1.09005 * 109.47217 * 304.87502 * 3 2 1 29 29 H 1.08994 * 109.47242 * 62.06872 * 4 2 1 30 30 H 1.09001 * 109.47122 * 302.06407 * 4 2 1 31 31 H 1.09005 * 109.46972 * 48.10416 * 6 5 4 32 32 H 1.09000 * 109.47450 * 168.10780 * 6 5 4 33 33 H 0.96998 * 120.00291 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.46864 * 331.54080 * 15 5 4 35 35 H 1.08990 * 109.47057 * 211.53966 * 15 5 4 36 36 H 1.09006 * 109.46626 * 64.63441 * 16 15 5 37 37 H 1.08994 * 109.47498 * 304.62874 * 16 15 5 38 38 H 1.09001 * 109.47145 * 60.00099 * 17 16 15 39 39 H 1.09007 * 109.46852 * 300.00364 * 17 16 15 40 40 H 1.00900 * 111.00174 * 56.04179 * 18 17 16 41 41 H 1.08997 * 115.54653 * 9.41786 * 19 18 17 42 42 H 1.09003 * 117.50152 * 0.02562 * 20 19 18 43 43 H 1.09003 * 117.49782 * 145.02409 * 20 19 18 44 44 H 1.09001 * 117.50330 * 214.98110 * 21 19 18 45 45 H 1.09003 * 117.49821 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5083 -0.6781 1.2744 6 6 4.0179 -0.8913 2.6355 7 6 3.7351 0.3282 3.4746 8 1 3.1583 1.1439 3.0644 9 6 4.2129 0.4026 4.7657 10 7 3.9657 1.4666 5.4982 11 14 5.2103 -1.0086 5.4753 12 1 6.6513 -0.7869 5.1936 13 1 4.9976 -1.0759 6.9434 14 1 4.7747 -2.2846 4.8529 15 6 4.0799 -1.6561 0.3391 16 6 4.3026 -0.9912 -1.0209 17 6 4.7890 -2.0370 -2.0262 18 7 5.0035 -1.3987 -3.3317 19 6 5.4726 -2.3748 -4.3243 20 6 6.6200 -1.9516 -5.2437 21 6 5.1983 -2.0707 -5.7985 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.7497 1.9305 0.9305 27 1 3.1265 1.4438 -0.0873 28 1 1.6071 1.9810 -0.8431 29 1 1.7074 -1.7591 1.2307 30 1 1.6469 -0.2294 2.1388 31 1 3.5251 -1.7578 3.0764 32 1 5.0933 -1.0650 2.5978 33 1 4.3016 1.5188 6.4066 34 1 3.3928 -2.4946 0.2253 35 1 5.0322 -2.0167 0.7276 36 1 5.0518 -0.2055 -0.9228 37 1 3.3658 -0.5584 -1.3715 38 1 4.0399 -2.8228 -2.1242 39 1 5.7259 -2.4700 -1.6754 40 1 5.6461 -0.6246 -3.2546 41 1 5.4375 -3.4180 -4.0106 42 1 7.0271 -0.9491 -5.1118 43 1 7.3396 -2.7166 -5.5352 44 1 4.9832 -2.9139 -6.4548 45 1 4.6694 -1.1466 -6.0318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043418014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:25 Heat of formation + Delta-G solvation = -1.938682 kcal Electronic energy + Delta-G solvation = -19370.939959 eV Core-core repulsion = 16615.930109 eV Total energy + Delta-G solvation = -2755.009850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55761 -38.68463 -35.67966 -35.42361 -34.24245 -31.51735 -29.28973 -27.86337 -26.73465 -24.80808 -23.21510 -22.54956 -22.26850 -21.55728 -20.71859 -18.85860 -17.30038 -16.95303 -16.46864 -16.39613 -15.84502 -15.40460 -15.31129 -14.81885 -14.48800 -14.36916 -13.90607 -13.75396 -13.40695 -13.39130 -13.15029 -12.85487 -12.77334 -12.53097 -12.36066 -12.19148 -12.14844 -11.96796 -11.81059 -11.70387 -11.65125 -11.42391 -11.32240 -11.12502 -10.85425 -10.75268 -9.15708 -8.92574 -8.25750 -6.27696 1.34152 1.35399 1.46008 2.35212 2.87077 3.03389 3.08606 3.39694 3.95613 4.03710 4.09327 4.12233 4.19894 4.27618 4.31459 4.44429 4.48258 4.56972 4.63185 4.75668 4.78046 4.79866 4.81481 4.86571 4.92598 4.94187 5.05530 5.07266 5.09043 5.16300 5.22589 5.30085 5.31430 5.35350 5.43976 5.57010 5.63898 5.76046 6.06768 6.13895 6.40411 6.47664 6.73531 6.79602 7.35350 8.91081 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019499 B = 0.004737 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.594492 B = 5910.002005 C = 6893.956382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.124 4.124 4 C 0.070 3.930 5 N -0.535 5.535 6 C 0.173 3.827 7 C -0.508 4.508 8 H 0.039 0.961 9 C 0.006 3.994 10 N -0.950 5.950 11 Si 0.946 3.054 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.253 1.253 15 C 0.054 3.946 16 C -0.106 4.106 17 C 0.071 3.929 18 N -0.666 5.666 19 C 0.009 3.991 20 C -0.202 4.202 21 C -0.172 4.172 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.045 0.955 31 H -0.017 1.017 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.344 0.656 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -9.706 -19.721 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.181 4.181 4 C -0.058 4.058 5 N -0.259 5.259 6 C 0.045 3.955 7 C -0.546 4.546 8 H 0.057 0.943 9 C -0.191 4.191 10 N -0.591 5.591 11 Si 0.770 3.230 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.177 1.177 15 C -0.075 4.075 16 C -0.144 4.144 17 C -0.058 4.058 18 N -0.297 5.297 19 C -0.101 4.101 20 C -0.240 4.240 21 C -0.210 4.210 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.000 1.000 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.164 0.836 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.663 -9.215 -19.856 21.901 hybrid contribution 1.080 -0.905 1.588 2.123 sum 1.743 -10.120 -18.269 20.957 Atomic orbital electron populations 1.21792 0.94434 1.01925 1.01804 1.21229 0.95591 0.96427 0.97284 1.21563 1.01218 0.95695 0.99653 1.22152 0.87438 0.97709 0.98519 1.61731 1.06915 1.49961 1.07246 1.19979 0.94643 0.94212 0.86623 1.21277 1.33108 1.03085 0.97146 0.94307 1.25829 0.97459 0.98420 0.97357 1.70056 1.48265 1.30687 1.10078 0.85739 0.79503 0.80255 0.77549 1.19098 1.20902 1.17692 1.22190 0.98964 0.92953 0.93367 1.21644 1.02457 0.97774 0.92517 1.21870 0.99632 0.96611 0.87728 1.60209 1.51613 1.10396 1.07440 1.22509 1.01589 0.96135 0.89888 1.23474 0.92080 1.03206 1.05265 1.23165 0.98218 1.03767 0.95897 0.93963 0.91124 0.92119 0.89718 0.95848 0.93058 0.92224 0.95242 0.93638 0.99969 0.95551 0.92583 0.93813 0.92383 0.92827 0.90228 0.90742 0.94941 0.83641 0.87048 0.88722 0.87761 0.87646 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.19 71.98 0.66 -3.05 16 2 C -0.09 -2.67 2.47 -10.80 -0.03 -2.70 16 3 C -0.12 -4.19 8.75 71.98 0.63 -3.56 16 4 C 0.07 2.64 4.25 86.30 0.37 3.01 16 5 N -0.54 -21.61 3.52 -900.79 -3.17 -24.78 16 6 C 0.17 8.30 3.73 85.56 0.32 8.61 16 7 C -0.51 -29.57 8.96 25.60 0.23 -29.34 16 8 H 0.04 2.53 7.80 -2.91 -0.02 2.51 16 9 C 0.01 0.36 5.47 84.65 0.46 0.82 16 10 N -0.95 -60.03 13.96 21.45 0.30 -59.74 16 11 Si 0.95 44.48 27.37 68.60 1.88 46.36 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.25 -11.14 6.69 99.48 0.67 -10.47 16 15 C 0.05 1.70 5.06 86.30 0.44 2.14 16 16 C -0.11 -2.82 5.40 30.60 0.17 -2.65 16 17 C 0.07 1.53 5.54 86.30 0.48 2.01 16 18 N -0.67 -13.60 6.78 -491.58 -3.33 -16.94 16 19 C 0.01 0.16 6.31 44.91 0.28 0.44 16 20 C -0.20 -2.92 10.23 30.62 0.31 -2.61 16 21 C -0.17 -2.64 10.46 30.62 0.32 -2.32 16 22 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 2.38 5.33 -2.39 -0.01 2.37 16 26 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.05 1.89 7.51 -2.39 -0.02 1.87 16 28 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.03 1.03 7.58 -2.39 -0.02 1.01 16 30 H 0.04 2.06 6.95 -2.39 -0.02 2.04 16 31 H -0.02 -0.84 7.45 -2.38 -0.02 -0.86 16 32 H 0.03 1.24 6.77 -2.39 -0.02 1.23 16 33 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.04 1.27 7.42 -2.39 -0.02 1.25 16 35 H 0.06 1.83 7.39 -2.39 -0.02 1.82 16 36 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.08 2.19 4.65 -2.39 -0.01 2.18 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.34 6.80 8.51 -89.69 -0.76 6.04 16 41 H 0.11 1.80 7.90 -2.39 -0.02 1.78 16 42 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 43 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.96 349.57 0.44 -64.52 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.12 Total: 19.77 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 4.64 Total: -29.19 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -6.21 Total: -101.46 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -64.96 0.44 -64.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043418014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.580 kcal (2) G-P(sol) polarization free energy of solvation -64.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds