Wall clock time and date at job start Mon Mar 30 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 H 1.08998 * 109.46750 * 306.09715 * 3 2 1 5 5 C 1.50694 * 109.46983 * 186.09474 * 3 2 1 6 6 H 1.07997 * 120.00484 * 239.99625 * 5 3 2 7 7 C 1.37882 * 119.99831 * 60.00541 * 5 3 2 8 8 N 1.31513 * 119.99767 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00279 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47106 * 59.99196 * 9 7 5 11 11 H 1.48497 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46657 * 299.99818 * 9 7 5 13 13 N 1.46904 * 109.46780 * 66.09813 * 3 2 1 14 14 C 1.46899 * 110.99793 * 255.52004 * 13 3 2 15 15 C 1.53002 * 109.47285 * 274.51937 * 14 13 3 16 16 H 1.08991 * 109.46845 * 54.41346 * 15 14 13 17 17 C 1.52996 * 109.47122 * 294.40925 * 15 14 13 18 18 N 1.46899 * 109.46801 * 174.40804 * 15 14 13 19 19 C 1.46847 * 111.00644 * 304.03986 * 18 15 14 20 20 C 1.53028 * 109.52619 * 174.16059 * 19 18 15 21 21 C 1.53119 * 109.27887 * 59.17698 * 20 19 18 22 22 C 1.53119 * 109.16322 * 302.34660 * 21 20 19 23 23 C 1.46846 * 110.99985 * 179.82310 * 18 15 14 24 24 H 1.08997 * 109.46896 * 299.84994 * 1 2 3 25 25 H 1.09006 * 109.46824 * 59.84367 * 1 2 3 26 26 H 1.08995 * 109.47224 * 179.84962 * 1 2 3 27 27 H 1.09002 * 109.47155 * 239.99641 * 2 1 3 28 28 H 1.09003 * 109.46824 * 119.99728 * 2 1 3 29 29 H 0.97005 * 119.99375 * 180.02562 * 8 7 5 30 30 H 1.00907 * 110.99513 * 131.57131 * 13 3 2 31 31 H 1.09002 * 109.46595 * 154.51997 * 14 13 3 32 32 H 1.09002 * 109.47213 * 34.52194 * 14 13 3 33 33 H 1.09005 * 109.46961 * 60.00179 * 17 15 14 34 34 H 1.09002 * 109.46921 * 180.02562 * 17 15 14 35 35 H 1.09003 * 109.47074 * 300.00393 * 17 15 14 36 36 H 1.08996 * 109.45893 * 294.18066 * 19 18 15 37 37 H 1.09003 * 109.46011 * 54.14017 * 19 18 15 38 38 H 1.09005 * 109.50447 * 299.23677 * 20 19 18 39 39 H 1.09001 * 109.50386 * 179.11960 * 20 19 18 40 40 H 1.09003 * 109.52418 * 182.44067 * 21 20 19 41 41 H 1.09002 * 109.57610 * 62.28510 * 21 20 19 42 42 H 1.09001 * 109.49732 * 297.71236 * 22 21 20 43 43 H 1.09001 * 109.50290 * 177.59459 * 22 21 20 44 44 H 1.08992 * 109.46637 * 305.86487 * 23 18 15 45 45 H 1.09009 * 109.45589 * 65.84002 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5903 1.9868 -0.8304 5 6 3.5394 1.4451 -0.1508 6 1 4.1587 1.8848 0.6170 7 6 4.1208 0.8863 -1.2693 8 7 3.3667 0.3507 -2.2042 9 14 5.9793 0.8901 -1.4568 10 1 6.5925 0.1489 -0.3254 11 1 6.3492 0.2338 -2.7365 12 1 6.4739 2.2904 -1.4571 13 7 1.6742 2.0912 1.2663 14 6 0.5500 3.0177 1.0775 15 6 1.0814 4.3785 0.6229 16 1 1.7016 4.2485 -0.2639 17 6 1.9174 4.9998 1.7435 18 7 -0.0472 5.2637 0.3055 19 6 -0.9270 4.6549 -0.7004 20 6 -2.1631 5.5350 -0.8985 21 6 -1.7234 6.9290 -1.3545 22 6 -0.7700 7.5211 -0.3128 23 6 0.4257 6.5834 -0.1315 24 1 -0.3633 0.5115 0.8913 25 1 -0.3633 0.5163 -0.8886 26 1 -0.3633 -1.0276 -0.0027 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7757 -0.0428 -2.9909 30 1 2.4677 2.5636 1.6730 31 1 0.0127 3.1335 2.0188 32 1 -0.1255 2.6199 0.3201 33 1 2.7549 4.3430 1.9789 34 1 2.2956 5.9695 1.4197 35 1 1.2971 5.1298 2.6303 36 1 -0.3905 4.5643 -1.6448 37 1 -1.2357 3.6659 -0.3619 38 1 -2.7077 5.6148 0.0423 39 1 -2.8083 5.0909 -1.6566 40 1 -2.5978 7.5721 -1.4551 41 1 -1.2132 6.8551 -2.3149 42 1 -1.2927 7.6321 0.6373 43 1 -0.4199 8.4959 -0.6523 44 1 1.0994 6.9950 0.6199 45 1 0.9557 6.4837 -1.0789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044992992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:59 Heat of formation + Delta-G solvation = -14.667436 kcal Electronic energy + Delta-G solvation = -20373.118127 eV Core-core repulsion = 17617.556317 eV Total energy + Delta-G solvation = -2755.561810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.21991 -36.62134 -34.31431 -32.19086 -30.90847 -30.89010 -28.98306 -27.01910 -24.93924 -23.65339 -22.71819 -22.14352 -20.03141 -19.64316 -19.06008 -16.77776 -16.27109 -14.88804 -14.81262 -14.63774 -14.22850 -13.87231 -13.54048 -13.47447 -13.13802 -12.89736 -12.69789 -12.58051 -11.99260 -11.69130 -11.62122 -11.31467 -11.15079 -11.09745 -10.99284 -10.78147 -10.76298 -10.74104 -10.52726 -10.20616 -10.09768 -9.93655 -9.62596 -9.31954 -8.84580 -8.43025 -8.03048 -7.20308 -6.03183 -4.11394 3.28279 3.33343 3.35803 4.09797 4.38747 4.86931 4.90346 4.97550 5.24909 5.27511 5.38150 5.43390 5.55566 5.58726 5.67675 5.70046 5.79455 5.83594 5.93983 5.95130 6.06151 6.14560 6.16755 6.21550 6.24644 6.37404 6.40150 6.44956 6.48415 6.54985 6.65589 6.71564 7.08317 7.18265 7.37512 7.40132 7.49528 7.60913 7.76652 7.98027 8.27675 8.41150 8.70659 9.02419 9.54679 11.01066 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.005882 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.964916 B = 4759.103521 C = 5138.140936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.009 0.991 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.686 5.686 14 C 0.068 3.932 15 C 0.046 3.954 16 H 0.046 0.954 17 C -0.141 4.141 18 N -0.529 5.529 19 C 0.049 3.951 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.114 4.114 23 C 0.050 3.950 24 H 0.044 0.956 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.331 0.669 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 10.850 2.914 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.027 0.973 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.063 4.063 16 H 0.064 0.936 17 C -0.199 4.199 18 N -0.255 5.255 19 C -0.079 4.079 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.078 4.078 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.855 10.268 3.366 13.970 hybrid contribution 1.996 0.609 -1.523 2.583 sum -6.859 10.877 1.843 12.990 Atomic orbital electron populations 1.21798 0.99633 0.98727 0.99740 1.21536 0.91539 0.99649 1.01721 1.19151 0.94044 0.91239 0.84733 0.97327 1.21456 0.91788 1.38545 1.04857 0.92581 1.24914 0.97996 0.95085 0.95759 1.69881 1.34786 1.38534 1.09280 0.86663 0.85801 0.78170 0.77388 1.20148 1.21276 1.20435 1.61000 1.10054 1.31334 1.29323 1.22249 0.95268 0.88691 1.00110 1.22474 0.91408 0.94415 0.98017 0.93559 1.21839 0.99529 1.00100 0.98411 1.62006 1.18840 1.02623 1.42042 1.22161 0.93771 0.98363 0.93597 1.21571 0.97240 0.95079 1.01339 1.21580 0.99003 0.96741 0.98573 1.21565 0.96499 0.97561 0.99577 1.22132 0.96520 0.90312 0.98846 0.93663 0.94729 0.95362 0.89385 0.94567 0.92876 0.84919 0.92032 0.91491 0.91740 0.93233 0.92195 0.95062 0.90023 0.91284 0.91880 0.92242 0.92467 0.91308 0.92096 0.90608 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.95 37.16 0.33 -2.61 16 2 C -0.11 -2.58 5.45 -26.73 -0.15 -2.73 16 3 C 0.22 5.34 1.90 -68.86 -0.13 5.20 16 4 H 0.01 0.24 7.23 -51.93 -0.38 -0.13 16 5 C -0.53 -14.21 8.60 -34.44 -0.30 -14.50 16 6 H 0.06 1.48 7.38 -52.49 -0.39 1.10 16 7 C 0.06 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.45 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.69 -14.43 6.20 -107.95 -0.67 -15.10 16 14 C 0.07 1.23 4.34 -3.82 -0.02 1.21 16 15 C 0.05 0.79 2.22 -67.71 -0.15 0.64 16 16 H 0.05 0.95 7.79 -51.93 -0.40 0.54 16 17 C -0.14 -2.13 8.78 37.16 0.33 -1.80 16 18 N -0.53 -7.93 4.52 -226.71 -1.03 -8.96 16 19 C 0.05 0.72 5.15 -3.84 -0.02 0.70 16 20 C -0.11 -1.36 6.09 -26.66 -0.16 -1.52 16 21 C -0.12 -1.32 6.00 -26.61 -0.16 -1.48 16 22 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 23 C 0.05 0.67 5.22 -3.84 -0.02 0.65 16 24 H 0.04 0.89 6.90 -51.93 -0.36 0.53 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 2.39 5.93 -51.93 -0.31 2.08 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.89 5.72 -39.29 -0.22 6.66 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.27 4.33 -51.93 -0.22 1.05 16 33 H 0.06 1.01 6.45 -51.93 -0.34 0.68 16 34 H 0.05 0.69 6.28 -51.93 -0.33 0.36 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.26 5.79 -51.93 -0.30 0.95 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.97 6.00 -51.93 -0.31 0.66 16 45 H 0.03 0.42 8.14 -51.92 -0.42 -0.01 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -27.25 330.92 -9.99 -37.24 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.19 Total: 6.17 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -0.70 Total: -15.99 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -1.07 Total: -48.51 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.25 -9.99 -37.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044992992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.575 kcal (2) G-P(sol) polarization free energy of solvation -27.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds