Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 H 1.08998 * 109.46750 * 306.09715 * 3 2 1 5 5 C 1.50694 * 109.46983 * 186.09474 * 3 2 1 6 6 H 1.07997 * 120.00484 * 239.99625 * 5 3 2 7 7 C 1.37882 * 119.99831 * 60.00541 * 5 3 2 8 8 N 1.31513 * 119.99767 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00279 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47106 * 59.99196 * 9 7 5 11 11 H 1.48497 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46657 * 299.99818 * 9 7 5 13 13 N 1.46904 * 109.46780 * 66.09813 * 3 2 1 14 14 C 1.46899 * 110.99793 * 255.52004 * 13 3 2 15 15 C 1.53002 * 109.47285 * 274.51937 * 14 13 3 16 16 H 1.08991 * 109.46845 * 54.41346 * 15 14 13 17 17 C 1.52996 * 109.47122 * 294.40925 * 15 14 13 18 18 N 1.46899 * 109.46801 * 174.40804 * 15 14 13 19 19 C 1.46847 * 111.00644 * 304.03986 * 18 15 14 20 20 C 1.53028 * 109.52619 * 174.16059 * 19 18 15 21 21 C 1.53119 * 109.27887 * 59.17698 * 20 19 18 22 22 C 1.53119 * 109.16322 * 302.34660 * 21 20 19 23 23 C 1.46846 * 110.99985 * 179.82310 * 18 15 14 24 24 H 1.08997 * 109.46896 * 299.84994 * 1 2 3 25 25 H 1.09006 * 109.46824 * 59.84367 * 1 2 3 26 26 H 1.08995 * 109.47224 * 179.84962 * 1 2 3 27 27 H 1.09002 * 109.47155 * 239.99641 * 2 1 3 28 28 H 1.09003 * 109.46824 * 119.99728 * 2 1 3 29 29 H 0.97005 * 119.99375 * 180.02562 * 8 7 5 30 30 H 1.00907 * 110.99513 * 131.57131 * 13 3 2 31 31 H 1.09002 * 109.46595 * 154.51997 * 14 13 3 32 32 H 1.09002 * 109.47213 * 34.52194 * 14 13 3 33 33 H 1.09005 * 109.46961 * 60.00179 * 17 15 14 34 34 H 1.09002 * 109.46921 * 180.02562 * 17 15 14 35 35 H 1.09003 * 109.47074 * 300.00393 * 17 15 14 36 36 H 1.08996 * 109.45893 * 294.18066 * 19 18 15 37 37 H 1.09003 * 109.46011 * 54.14017 * 19 18 15 38 38 H 1.09005 * 109.50447 * 299.23677 * 20 19 18 39 39 H 1.09001 * 109.50386 * 179.11960 * 20 19 18 40 40 H 1.09003 * 109.52418 * 182.44067 * 21 20 19 41 41 H 1.09002 * 109.57610 * 62.28510 * 21 20 19 42 42 H 1.09001 * 109.49732 * 297.71236 * 22 21 20 43 43 H 1.09001 * 109.50290 * 177.59459 * 22 21 20 44 44 H 1.08992 * 109.46637 * 305.86487 * 23 18 15 45 45 H 1.09009 * 109.45589 * 65.84002 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5903 1.9868 -0.8304 5 6 3.5394 1.4451 -0.1508 6 1 4.1587 1.8848 0.6170 7 6 4.1208 0.8863 -1.2693 8 7 3.3667 0.3507 -2.2042 9 14 5.9793 0.8901 -1.4568 10 1 6.5925 0.1489 -0.3254 11 1 6.3492 0.2338 -2.7365 12 1 6.4739 2.2904 -1.4571 13 7 1.6742 2.0912 1.2663 14 6 0.5500 3.0177 1.0775 15 6 1.0814 4.3785 0.6229 16 1 1.7016 4.2485 -0.2639 17 6 1.9174 4.9998 1.7435 18 7 -0.0472 5.2637 0.3055 19 6 -0.9270 4.6549 -0.7004 20 6 -2.1631 5.5350 -0.8985 21 6 -1.7234 6.9290 -1.3545 22 6 -0.7700 7.5211 -0.3128 23 6 0.4257 6.5834 -0.1315 24 1 -0.3633 0.5115 0.8913 25 1 -0.3633 0.5163 -0.8886 26 1 -0.3633 -1.0276 -0.0027 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7757 -0.0428 -2.9909 30 1 2.4677 2.5636 1.6730 31 1 0.0127 3.1335 2.0188 32 1 -0.1255 2.6199 0.3201 33 1 2.7549 4.3430 1.9789 34 1 2.2956 5.9695 1.4197 35 1 1.2971 5.1298 2.6303 36 1 -0.3905 4.5643 -1.6448 37 1 -1.2357 3.6659 -0.3619 38 1 -2.7077 5.6148 0.0423 39 1 -2.8083 5.0909 -1.6566 40 1 -2.5978 7.5721 -1.4551 41 1 -1.2132 6.8551 -2.3149 42 1 -1.2927 7.6321 0.6373 43 1 -0.4199 8.4959 -0.6523 44 1 1.0994 6.9950 0.6199 45 1 0.9557 6.4837 -1.0789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044992992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -31.400618 kcal Electronic energy + Delta-G solvation = -20373.843732 eV Core-core repulsion = 17617.556317 eV Total energy + Delta-G solvation = -2756.287416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45610 -38.23292 -35.81119 -34.02711 -32.56465 -31.96787 -30.39457 -28.80381 -26.43888 -25.06844 -24.29570 -23.39761 -21.63562 -20.92988 -20.54029 -18.78220 -17.54493 -16.81037 -16.21880 -15.91476 -15.62933 -15.31536 -14.93149 -14.67824 -14.45678 -14.33178 -14.16847 -14.08454 -13.53405 -13.41175 -13.09524 -12.93412 -12.68461 -12.66206 -12.51091 -12.23585 -12.13437 -12.08374 -12.07470 -11.60254 -11.53585 -11.36263 -11.15319 -10.96071 -10.85681 -10.51328 -9.33287 -8.98341 -8.12410 -6.28220 1.38566 1.40148 1.47428 2.38914 2.87603 3.13714 3.80005 3.84100 3.88854 3.96967 4.11589 4.16508 4.33431 4.41769 4.46230 4.52744 4.59318 4.63995 4.69448 4.78690 4.82404 4.83835 4.87122 4.94096 4.99190 5.04723 5.09878 5.12575 5.20924 5.22703 5.26468 5.33187 5.34008 5.48450 5.52715 5.65050 5.69279 5.94402 6.11829 6.19095 6.27624 6.47094 6.80778 7.05515 7.41972 8.90367 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.005882 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.964916 B = 4759.103521 C = 5138.140936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C 0.227 3.773 4 H -0.026 1.026 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.073 3.927 15 C 0.054 3.946 16 H 0.002 0.998 17 C -0.134 4.134 18 N -0.522 5.522 19 C 0.047 3.953 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.108 4.108 23 C 0.046 3.954 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.333 0.667 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 12.268 4.005 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C 0.118 3.882 4 H -0.008 1.008 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.057 4.057 15 C -0.056 4.056 16 H 0.020 0.980 17 C -0.192 4.192 18 N -0.247 5.247 19 C -0.081 4.081 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.082 4.082 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.023 0.977 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -9.508 11.702 4.469 15.726 hybrid contribution 2.167 0.183 -1.866 2.865 sum -7.341 11.884 2.604 14.209 Atomic orbital electron populations 1.21644 0.96808 1.00129 1.00009 1.21407 0.94094 0.98876 0.99835 1.18891 0.92880 0.91361 0.85063 1.00826 1.21811 0.93114 1.38445 1.05028 0.92560 1.25689 1.02364 0.94782 0.95511 1.70021 1.36472 1.39150 1.09646 0.85665 0.80559 0.78310 0.77432 1.19454 1.20985 1.19883 1.60941 1.10676 1.32445 1.27252 1.22211 0.94098 0.88826 1.00606 1.22275 0.91691 0.94661 0.96948 0.98019 1.21779 0.99071 1.00279 0.98061 1.62092 1.17724 1.02879 1.42050 1.22206 0.94816 0.98908 0.92193 1.21552 0.95717 0.95177 1.02179 1.21600 0.99835 0.96402 0.98019 1.21556 0.95347 0.97608 1.00076 1.22268 0.97944 0.89885 0.98115 0.92509 0.95252 0.93366 0.92326 0.95210 0.92957 0.84728 0.90230 0.92561 0.92652 0.91978 0.90621 0.97696 0.91063 0.90465 0.90812 0.89832 0.93343 0.90557 0.90184 0.89758 0.97207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.95 71.98 0.64 -4.67 16 2 C -0.10 -5.14 5.45 30.60 0.17 -4.98 16 3 C 0.23 11.54 1.90 44.17 0.08 11.62 16 4 H -0.03 -1.49 7.23 -2.39 -0.02 -1.50 16 5 C -0.55 -30.02 8.60 25.60 0.22 -29.80 16 6 H 0.06 3.02 7.38 -2.91 -0.02 3.00 16 7 C 0.02 0.90 5.29 84.66 0.45 1.34 16 8 N -0.91 -53.14 11.29 21.45 0.24 -52.90 16 9 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 N -0.68 -28.97 6.20 -495.44 -3.07 -32.05 16 14 C 0.07 2.65 4.34 86.30 0.37 3.03 16 15 C 0.05 1.87 2.22 44.91 0.10 1.97 16 16 H 0.00 0.08 7.79 -2.39 -0.02 0.06 16 17 C -0.13 -3.92 8.78 71.98 0.63 -3.28 16 18 N -0.52 -15.41 4.52 -871.17 -3.94 -19.36 16 19 C 0.05 1.39 5.15 86.32 0.44 1.84 16 20 C -0.11 -2.41 6.09 30.64 0.19 -2.22 16 21 C -0.12 -2.38 6.00 30.67 0.18 -2.19 16 22 C -0.11 -2.13 6.09 30.64 0.19 -1.95 16 23 C 0.05 1.18 5.22 86.32 0.45 1.63 16 24 H 0.06 2.19 6.90 -2.39 -0.02 2.18 16 25 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 27 H 0.06 3.28 5.93 -2.39 -0.01 3.26 16 28 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 30 H 0.33 13.93 5.72 -89.69 -0.51 13.42 16 31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.06 2.18 4.33 -2.39 -0.01 2.17 16 33 H 0.05 1.71 6.45 -2.38 -0.02 1.69 16 34 H 0.06 1.64 6.28 -2.39 -0.01 1.62 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.07 2.24 5.79 -2.39 -0.01 2.22 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 2.02 6.00 -2.39 -0.01 2.01 16 45 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 Total: -1.00 -59.59 330.92 -0.20 -59.79 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.43 Total: 26.38 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.12 Total: -27.67 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -6.77 Total: -104.30 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -59.59 -0.20 -59.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044992992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.385 kcal (2) G-P(sol) polarization free energy of solvation -59.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds