Wall clock time and date at job start Mon Mar 30 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46787 * 2 1 4 4 H 1.08995 * 109.47547 * 305.99311 * 3 2 1 5 5 C 1.50700 * 109.46972 * 185.99704 * 3 2 1 6 6 H 1.08007 * 119.99907 * 244.23830 * 5 3 2 7 7 C 1.37873 * 120.00504 * 64.23368 * 5 3 2 8 8 N 1.31515 * 119.99760 * 9.38027 * 7 5 3 9 9 Si 1.86801 * 120.00479 * 189.09841 * 7 5 3 10 10 H 1.48505 * 109.46825 * 90.00208 * 9 7 5 11 11 H 1.48492 * 109.47335 * 210.00081 * 9 7 5 12 12 H 1.48496 * 109.47001 * 330.00536 * 9 7 5 13 13 N 1.46900 * 109.46964 * 65.99658 * 3 2 1 14 14 C 1.46900 * 110.99850 * 206.25942 * 13 3 2 15 15 H 1.09005 * 109.47576 * 325.26153 * 14 13 3 16 16 C 1.53010 * 109.46945 * 85.25319 * 14 13 3 17 17 C 1.52996 * 109.47285 * 205.25225 * 14 13 3 18 18 N 1.46896 * 109.46722 * 54.86427 * 17 14 13 19 19 C 1.46855 * 111.00043 * 200.02779 * 18 17 14 20 20 C 1.53028 * 109.52518 * 174.15936 * 19 18 17 21 21 C 1.53122 * 109.28160 * 59.17840 * 20 19 18 22 22 C 1.53120 * 109.15942 * 302.34646 * 21 20 19 23 23 C 1.46846 * 111.00411 * 75.81756 * 18 17 14 24 24 H 1.09000 * 109.47084 * 62.92814 * 1 2 3 25 25 H 1.09000 * 109.46855 * 182.93013 * 1 2 3 26 26 H 1.09000 * 109.46816 * 302.92182 * 1 2 3 27 27 H 1.08999 * 109.47116 * 240.00482 * 2 1 3 28 28 H 1.08997 * 109.47564 * 120.00082 * 2 1 3 29 29 H 0.97004 * 120.00050 * 359.91002 * 8 7 5 30 30 H 1.00900 * 111.00152 * 330.21125 * 13 3 2 31 31 H 1.09003 * 109.47093 * 304.72850 * 16 14 13 32 32 H 1.09004 * 109.46571 * 64.72260 * 16 14 13 33 33 H 1.08997 * 109.47073 * 184.72205 * 16 14 13 34 34 H 1.08999 * 109.47108 * 174.86017 * 17 14 13 35 35 H 1.08994 * 109.47486 * 294.86043 * 17 14 13 36 36 H 1.09001 * 109.46030 * 294.17843 * 19 18 17 37 37 H 1.09002 * 109.46216 * 54.14162 * 19 18 17 38 38 H 1.08999 * 109.50409 * 299.23510 * 20 19 18 39 39 H 1.09005 * 109.50501 * 179.12097 * 20 19 18 40 40 H 1.08995 * 109.52621 * 182.43957 * 21 20 19 41 41 H 1.09003 * 109.57375 * 62.28160 * 21 20 19 42 42 H 1.08996 * 109.50251 * 297.71279 * 22 21 20 43 43 H 1.09001 * 109.49917 * 177.59031 * 22 21 20 44 44 H 1.08994 * 109.46381 * 305.85401 * 23 18 17 45 45 H 1.09008 * 109.46286 * 65.82327 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5917 1.9864 -0.8314 5 6 3.5396 1.4452 -0.1484 6 1 4.1607 1.8231 0.6503 7 6 4.1189 0.9651 -1.3038 8 7 3.3689 0.6779 -2.3452 9 14 5.9700 0.7302 -1.3928 10 1 6.3168 -0.6423 -0.9440 11 1 6.4268 0.9235 -2.7924 12 1 6.6377 1.7223 -0.5125 13 7 1.6719 2.0919 1.2652 14 6 1.5611 3.5471 1.0973 15 1 2.3028 3.8870 0.3743 16 6 0.1596 3.8970 0.5928 17 6 1.8060 4.2357 2.4414 18 7 3.1005 3.8031 2.9845 19 6 3.1700 4.0410 4.4319 20 6 4.4675 3.4482 4.9860 21 6 5.6617 4.1013 4.2846 22 6 5.5399 3.8804 2.7744 23 6 4.2113 4.4607 2.2844 24 1 -0.3633 0.4677 -0.9151 25 1 -0.3633 -1.0263 0.0525 26 1 -0.3633 0.5585 0.8627 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.4080 0.8025 -2.3000 30 1 0.8169 1.7045 1.6352 31 1 -0.0468 3.3408 -0.3216 32 1 -0.5763 3.6332 1.3525 33 1 0.1035 4.9662 0.3884 34 1 1.8144 5.3165 2.2997 35 1 1.0117 3.9667 3.1376 36 1 3.1492 5.1136 4.6250 37 1 2.3174 3.5679 4.9191 38 1 4.4826 2.3734 4.8055 39 1 4.5261 3.6387 6.0577 40 1 6.5866 3.6512 4.6452 41 1 5.6700 5.1704 4.4969 42 1 5.5719 2.8124 2.5591 43 1 6.3647 4.3797 2.2659 44 1 4.1151 4.2924 1.2118 45 1 4.1857 5.5314 2.4876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049501323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:03 Heat of formation + Delta-G solvation = -17.226567 kcal Electronic energy + Delta-G solvation = -20685.463712 eV Core-core repulsion = 17929.790929 eV Total energy + Delta-G solvation = -2755.672783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.74288 -36.85544 -34.23699 -32.23222 -31.31098 -30.43998 -28.69286 -25.98381 -25.40341 -23.05021 -22.72343 -22.41738 -19.81301 -19.72003 -19.31700 -16.54592 -15.80340 -15.12194 -14.49947 -14.32598 -14.03228 -13.91445 -13.62921 -13.24344 -13.07616 -12.92154 -12.66773 -12.25326 -11.98078 -11.96224 -11.71756 -11.43740 -11.08397 -11.00370 -10.84080 -10.62895 -10.44407 -10.38830 -10.33102 -10.02361 -10.00699 -9.88417 -9.80958 -9.60027 -8.49911 -8.19918 -7.63089 -6.97078 -6.14254 -3.82812 3.52810 3.54795 3.71203 4.32037 4.65241 5.07856 5.13252 5.17598 5.27304 5.47850 5.52078 5.57744 5.69208 5.73560 5.80463 5.84211 5.88042 5.91749 5.98612 6.01505 6.04798 6.06574 6.15215 6.23066 6.24550 6.28554 6.34851 6.47473 6.49406 6.61984 6.70484 6.72146 6.79874 6.94378 7.04248 7.30450 7.52069 7.67725 7.69222 8.28533 8.36587 8.68216 8.93846 9.13237 9.86349 11.19734 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.008960 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.307453 B = 3124.224379 C = 4344.871910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.210 3.790 4 H -0.012 1.012 5 C -0.562 4.562 6 H 0.063 0.937 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 1.065 2.935 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.650 5.650 14 C 0.095 3.905 15 H 0.079 0.921 16 C -0.180 4.180 17 C 0.074 3.926 18 N -0.503 5.503 19 C 0.059 3.941 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.116 4.116 23 C 0.063 3.937 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.267 0.733 30 H 0.310 0.690 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.017 0.983 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 7.070 11.032 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.102 3.898 4 H 0.005 0.995 5 C -0.601 4.601 6 H 0.081 0.919 7 C -0.191 4.191 8 N -0.561 5.561 9 Si 0.895 3.105 10 H -0.218 1.218 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.280 5.280 14 C -0.017 4.017 15 H 0.097 0.903 16 C -0.239 4.239 17 C -0.055 4.055 18 N -0.227 5.227 19 C -0.069 4.069 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.065 4.065 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.142 6.097 10.191 11.877 hybrid contribution -2.258 1.418 0.582 2.729 sum -2.116 7.515 10.773 13.305 Atomic orbital electron populations 1.21890 0.99141 0.99783 1.00059 1.21829 0.91778 1.01031 1.01981 1.19249 0.96345 0.88957 0.85293 0.99464 1.22054 0.90978 1.43377 1.03682 0.91920 1.25670 1.06336 0.94704 0.92362 1.70778 1.07308 1.47684 1.30341 0.83600 0.75193 0.76394 0.75349 1.21777 1.21658 1.21489 1.60563 1.36294 1.00751 1.30345 1.21423 0.94343 0.90887 0.95046 0.90266 1.22529 0.99097 1.01031 1.01287 1.22075 0.91084 0.95272 0.97038 1.61643 1.01541 1.58164 1.01334 1.22046 0.98086 0.97085 0.89690 1.21547 0.94150 1.01533 0.97989 1.21561 0.97967 0.99652 0.96392 1.21551 0.96244 1.02998 0.94569 1.22042 0.90851 0.93613 0.99948 0.93983 0.94245 0.93966 0.91270 0.92995 0.92162 0.87249 0.92564 0.93353 0.93298 0.96005 0.92055 0.96452 0.91464 0.90766 0.92536 0.92402 0.93097 0.90246 0.92338 0.89802 0.96772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.80 37.16 0.36 -2.48 16 2 C -0.13 -2.93 5.19 -26.73 -0.14 -3.07 16 3 C 0.21 5.07 1.44 -68.86 -0.10 4.97 16 4 H -0.01 -0.32 6.49 -51.93 -0.34 -0.66 16 5 C -0.56 -15.35 8.50 -34.44 -0.29 -15.64 16 6 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 7 C 0.01 0.33 5.15 -17.82 -0.09 0.24 16 8 N -0.92 -27.51 12.92 55.43 0.72 -26.79 16 9 Si 1.06 25.60 29.91 -169.99 -5.08 20.52 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.65 -13.44 5.77 -100.95 -0.58 -14.03 16 14 C 0.09 1.74 2.40 -67.71 -0.16 1.58 16 15 H 0.08 1.71 6.56 -51.93 -0.34 1.37 16 16 C -0.18 -2.87 9.16 37.16 0.34 -2.53 16 17 C 0.07 1.19 4.70 -3.83 -0.02 1.17 16 18 N -0.50 -8.45 4.31 -234.68 -1.01 -9.46 16 19 C 0.06 0.84 5.43 -3.83 -0.02 0.82 16 20 C -0.11 -1.52 6.09 -26.65 -0.16 -1.68 16 21 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 22 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 23 C 0.06 1.07 5.29 -3.83 -0.02 1.05 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.72 6.40 -51.93 -0.33 0.39 16 27 H 0.07 1.78 6.30 -51.93 -0.33 1.46 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.27 7.94 6.15 -40.82 -0.25 7.69 16 30 H 0.31 6.01 6.24 -39.29 -0.25 5.76 16 31 H 0.06 0.98 7.42 -51.93 -0.39 0.60 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 35 H 0.06 0.92 7.79 -51.93 -0.40 0.52 16 36 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.64 6.81 -51.93 -0.35 1.28 16 45 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -28.66 339.22 -9.98 -38.64 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.51 Total: 5.31 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.62 Total: -19.29 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.88 Total: -50.28 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.66 -9.98 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.414 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds