Wall clock time and date at job start Mon Mar 30 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46787 * 2 1 4 4 H 1.08995 * 109.47547 * 305.99311 * 3 2 1 5 5 C 1.50700 * 109.46972 * 185.99704 * 3 2 1 6 6 H 1.08007 * 119.99907 * 244.23830 * 5 3 2 7 7 C 1.37873 * 120.00504 * 64.23368 * 5 3 2 8 8 N 1.31515 * 119.99760 * 9.38027 * 7 5 3 9 9 Si 1.86801 * 120.00479 * 189.09841 * 7 5 3 10 10 H 1.48505 * 109.46825 * 90.00208 * 9 7 5 11 11 H 1.48492 * 109.47335 * 210.00081 * 9 7 5 12 12 H 1.48496 * 109.47001 * 330.00536 * 9 7 5 13 13 N 1.46900 * 109.46964 * 65.99658 * 3 2 1 14 14 C 1.46900 * 110.99850 * 206.25942 * 13 3 2 15 15 H 1.09005 * 109.47576 * 325.26153 * 14 13 3 16 16 C 1.53010 * 109.46945 * 85.25319 * 14 13 3 17 17 C 1.52996 * 109.47285 * 205.25225 * 14 13 3 18 18 N 1.46896 * 109.46722 * 54.86427 * 17 14 13 19 19 C 1.46855 * 111.00043 * 200.02779 * 18 17 14 20 20 C 1.53028 * 109.52518 * 174.15936 * 19 18 17 21 21 C 1.53122 * 109.28160 * 59.17840 * 20 19 18 22 22 C 1.53120 * 109.15942 * 302.34646 * 21 20 19 23 23 C 1.46846 * 111.00411 * 75.81756 * 18 17 14 24 24 H 1.09000 * 109.47084 * 62.92814 * 1 2 3 25 25 H 1.09000 * 109.46855 * 182.93013 * 1 2 3 26 26 H 1.09000 * 109.46816 * 302.92182 * 1 2 3 27 27 H 1.08999 * 109.47116 * 240.00482 * 2 1 3 28 28 H 1.08997 * 109.47564 * 120.00082 * 2 1 3 29 29 H 0.97004 * 120.00050 * 359.91002 * 8 7 5 30 30 H 1.00900 * 111.00152 * 330.21125 * 13 3 2 31 31 H 1.09003 * 109.47093 * 304.72850 * 16 14 13 32 32 H 1.09004 * 109.46571 * 64.72260 * 16 14 13 33 33 H 1.08997 * 109.47073 * 184.72205 * 16 14 13 34 34 H 1.08999 * 109.47108 * 174.86017 * 17 14 13 35 35 H 1.08994 * 109.47486 * 294.86043 * 17 14 13 36 36 H 1.09001 * 109.46030 * 294.17843 * 19 18 17 37 37 H 1.09002 * 109.46216 * 54.14162 * 19 18 17 38 38 H 1.08999 * 109.50409 * 299.23510 * 20 19 18 39 39 H 1.09005 * 109.50501 * 179.12097 * 20 19 18 40 40 H 1.08995 * 109.52621 * 182.43957 * 21 20 19 41 41 H 1.09003 * 109.57375 * 62.28160 * 21 20 19 42 42 H 1.08996 * 109.50251 * 297.71279 * 22 21 20 43 43 H 1.09001 * 109.49917 * 177.59031 * 22 21 20 44 44 H 1.08994 * 109.46381 * 305.85401 * 23 18 17 45 45 H 1.09008 * 109.46286 * 65.82327 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5917 1.9864 -0.8314 5 6 3.5396 1.4452 -0.1484 6 1 4.1607 1.8231 0.6503 7 6 4.1189 0.9651 -1.3038 8 7 3.3689 0.6779 -2.3452 9 14 5.9700 0.7302 -1.3928 10 1 6.3168 -0.6423 -0.9440 11 1 6.4268 0.9235 -2.7924 12 1 6.6377 1.7223 -0.5125 13 7 1.6719 2.0919 1.2652 14 6 1.5611 3.5471 1.0973 15 1 2.3028 3.8870 0.3743 16 6 0.1596 3.8970 0.5928 17 6 1.8060 4.2357 2.4414 18 7 3.1005 3.8031 2.9845 19 6 3.1700 4.0410 4.4319 20 6 4.4675 3.4482 4.9860 21 6 5.6617 4.1013 4.2846 22 6 5.5399 3.8804 2.7744 23 6 4.2113 4.4607 2.2844 24 1 -0.3633 0.4677 -0.9151 25 1 -0.3633 -1.0263 0.0525 26 1 -0.3633 0.5585 0.8627 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.4080 0.8025 -2.3000 30 1 0.8169 1.7045 1.6352 31 1 -0.0468 3.3408 -0.3216 32 1 -0.5763 3.6332 1.3525 33 1 0.1035 4.9662 0.3884 34 1 1.8144 5.3165 2.2997 35 1 1.0117 3.9667 3.1376 36 1 3.1492 5.1136 4.6250 37 1 2.3174 3.5679 4.9191 38 1 4.4826 2.3734 4.8055 39 1 4.5261 3.6387 6.0577 40 1 6.5866 3.6512 4.6452 41 1 5.6700 5.1704 4.4969 42 1 5.5719 2.8124 2.5591 43 1 6.3647 4.3797 2.2659 44 1 4.1151 4.2924 1.2118 45 1 4.1857 5.5314 2.4876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049501323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:03 Heat of formation + Delta-G solvation = -35.028069 kcal Electronic energy + Delta-G solvation = -20686.235643 eV Core-core repulsion = 17929.790929 eV Total energy + Delta-G solvation = -2756.444714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.04026 -38.50554 -35.85865 -33.90258 -32.99177 -31.63551 -30.30759 -27.46291 -27.15286 -24.83793 -24.06811 -23.67946 -21.66889 -21.23402 -20.50177 -18.64769 -17.10730 -16.76798 -15.97568 -15.69352 -15.61322 -15.45364 -15.18820 -14.60700 -14.53594 -14.24817 -14.00928 -13.95069 -13.60959 -13.20761 -13.18841 -13.02895 -12.66027 -12.52941 -12.42168 -12.28468 -12.04885 -11.94011 -11.84350 -11.68336 -11.56835 -11.40775 -11.16999 -11.02804 -10.52564 -10.36914 -8.89628 -8.77808 -8.36372 -6.09281 1.53050 1.60744 1.78517 2.62843 3.08748 3.30839 3.64415 3.95642 3.99550 4.06965 4.19398 4.31938 4.34921 4.39121 4.43150 4.47763 4.53526 4.55638 4.59547 4.70387 4.73313 4.75249 4.88490 4.92431 4.94866 5.01840 5.10816 5.12018 5.13504 5.15906 5.22399 5.28366 5.30327 5.40122 5.43836 5.56698 5.63257 6.26217 6.30271 6.39472 6.48539 6.75425 6.80602 7.18222 7.66609 8.93068 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.008960 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.307453 B = 3124.224379 C = 4344.871910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.218 3.782 4 H -0.043 1.043 5 C -0.562 4.562 6 H 0.047 0.953 7 C -0.036 4.036 8 N -0.947 5.947 9 Si 1.105 2.895 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.650 5.650 14 C 0.095 3.905 15 H 0.037 0.963 16 C -0.170 4.170 17 C 0.081 3.919 18 N -0.528 5.528 19 C 0.059 3.941 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.116 4.116 23 C 0.069 3.931 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.256 0.744 30 H 0.321 0.679 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 8.022 13.487 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.109 3.891 4 H -0.026 1.026 5 C -0.602 4.602 6 H 0.065 0.935 7 C -0.233 4.233 8 N -0.586 5.586 9 Si 0.929 3.071 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.280 5.280 14 C -0.017 4.017 15 H 0.056 0.944 16 C -0.230 4.230 17 C -0.047 4.047 18 N -0.252 5.252 19 C -0.068 4.068 20 C -0.150 4.150 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.059 4.059 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.339 7.060 12.674 14.511 hybrid contribution -2.131 1.164 -0.154 2.433 sum -2.470 8.224 12.520 15.182 Atomic orbital electron populations 1.21752 0.95506 1.01585 1.00779 1.21645 0.95021 0.99359 0.99943 1.18992 0.94473 0.89752 0.85858 1.02564 1.22284 0.92803 1.42211 1.02857 0.93494 1.26862 1.09694 0.94478 0.92258 1.70886 1.06825 1.49733 1.31196 0.83073 0.71263 0.77187 0.75538 1.20590 1.21643 1.19974 1.60455 1.37115 1.02175 1.28273 1.21423 0.94803 0.89468 0.95974 0.94438 1.22398 0.97768 1.01942 1.00857 1.21986 0.91458 0.95651 0.95638 1.61592 1.01589 1.58953 1.03109 1.22113 0.98871 0.98151 0.87680 1.21551 0.93748 1.00040 0.99684 1.21523 0.98645 1.00866 0.93847 1.21526 0.96058 1.00610 0.97163 1.21895 0.91656 0.94643 0.97757 0.94418 0.92044 0.91868 0.94606 0.93581 0.93391 0.86063 0.94752 0.90841 0.91450 0.94601 0.90168 0.94934 0.90646 0.92972 0.89638 0.91185 0.91351 0.93774 0.91665 0.93781 0.95101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.80 71.98 0.71 -4.37 16 2 C -0.12 -5.66 5.19 30.60 0.16 -5.50 16 3 C 0.22 10.91 1.44 44.17 0.06 10.97 16 4 H -0.04 -2.40 6.49 -2.39 -0.02 -2.41 16 5 C -0.56 -31.96 8.50 25.60 0.22 -31.74 16 6 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 7 C -0.04 -2.10 5.15 84.65 0.44 -1.66 16 8 N -0.95 -58.53 12.92 21.45 0.28 -58.25 16 9 Si 1.10 52.83 29.91 68.60 2.05 54.88 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.65 -26.98 5.77 -473.30 -2.73 -29.72 16 14 C 0.09 3.48 2.40 44.92 0.11 3.59 16 15 H 0.04 1.69 6.56 -2.38 -0.02 1.67 16 16 C -0.17 -5.22 9.16 71.99 0.66 -4.56 16 17 C 0.08 2.46 4.70 86.30 0.41 2.87 16 18 N -0.53 -17.17 4.31 -896.38 -3.86 -21.03 16 19 C 0.06 1.51 5.43 86.32 0.47 1.98 16 20 C -0.11 -2.70 6.09 30.64 0.19 -2.51 16 21 C -0.11 -2.68 6.00 30.68 0.18 -2.50 16 22 C -0.12 -3.64 6.09 30.65 0.19 -3.45 16 23 C 0.07 2.31 5.29 86.33 0.46 2.76 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 2.03 6.40 -2.39 -0.02 2.02 16 27 H 0.04 1.90 6.30 -2.39 -0.02 1.88 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.26 15.96 6.15 -92.71 -0.57 15.39 16 30 H 0.32 12.02 6.24 -89.69 -0.56 11.46 16 31 H 0.03 1.19 7.42 -2.39 -0.02 1.17 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.00 8.00 -2.39 -0.02 0.98 16 35 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 36 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.80 7.93 -2.39 -0.02 1.78 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.04 1.81 6.81 -2.39 -0.02 1.79 16 45 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -64.77 339.22 0.54 -64.23 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.56 Total: 24.01 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.24 Total: -34.12 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -6.31 Total: -109.00 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.05 Total: 54.88 kcal Total: -64.77 0.54 -64.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.203 kcal (2) G-P(sol) polarization free energy of solvation -64.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds