Wall clock time and date at job start Mon Mar 30 2020 06:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46836 * 2 1 4 4 H 1.09006 * 109.47051 * 305.28147 * 3 2 1 5 5 C 1.50702 * 109.46748 * 185.28655 * 3 2 1 6 6 H 1.08000 * 119.99322 * 239.99799 * 5 3 2 7 7 C 1.37878 * 120.00475 * 59.99951 * 5 3 2 8 8 N 1.31510 * 119.99543 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00102 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46920 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46883 * 119.99723 * 9 7 5 12 12 H 1.48497 * 109.47094 * 240.00147 * 9 7 5 13 13 N 1.46891 * 109.47343 * 65.28436 * 3 2 1 14 14 C 1.46895 * 111.00234 * 232.74960 * 13 3 2 15 15 H 1.08995 * 109.47434 * 182.32771 * 14 13 3 16 16 C 1.53000 * 109.47199 * 62.32711 * 14 13 3 17 17 C 1.52996 * 109.47259 * 302.32808 * 14 13 3 18 18 N 1.46896 * 109.47203 * 303.04764 * 17 14 13 19 19 C 1.46854 * 110.99768 * 288.37553 * 18 17 14 20 20 C 1.53033 * 109.52207 * 174.16168 * 19 18 17 21 21 C 1.53117 * 109.28400 * 59.17857 * 20 19 18 22 22 C 1.53121 * 109.15942 * 302.34804 * 21 20 19 23 23 C 1.46847 * 111.00519 * 164.16486 * 18 17 14 24 24 H 1.08999 * 109.46820 * 185.44786 * 1 2 3 25 25 H 1.08998 * 109.47262 * 65.44748 * 1 2 3 26 26 H 1.09000 * 109.46690 * 305.44386 * 1 2 3 27 27 H 1.08993 * 109.47424 * 120.00263 * 2 1 3 28 28 H 1.09000 * 109.46628 * 240.00190 * 2 1 3 29 29 H 0.97001 * 119.99640 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00439 * 108.79447 * 13 3 2 31 31 H 1.09000 * 109.47360 * 299.97539 * 16 14 13 32 32 H 1.09000 * 109.47263 * 59.97884 * 16 14 13 33 33 H 1.09003 * 109.47618 * 179.97438 * 16 14 13 34 34 H 1.09010 * 109.46965 * 63.04256 * 17 14 13 35 35 H 1.09003 * 109.47648 * 183.04192 * 17 14 13 36 36 H 1.09001 * 109.45985 * 294.17571 * 19 18 17 37 37 H 1.08994 * 109.46234 * 54.14654 * 19 18 17 38 38 H 1.08998 * 109.50693 * 299.23672 * 20 19 18 39 39 H 1.09001 * 109.53697 * 179.13659 * 20 19 18 40 40 H 1.08998 * 109.52759 * 182.44437 * 21 20 19 41 41 H 1.08998 * 109.52306 * 62.24427 * 21 20 19 42 42 H 1.09003 * 109.50090 * 297.70693 * 22 21 20 43 43 H 1.08993 * 109.50720 * 177.59327 * 22 21 20 44 44 H 1.08996 * 109.46316 * 305.85922 * 23 18 17 45 45 H 1.09004 * 109.46013 * 65.81878 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 -0.8390 5 6 3.5413 1.4445 -0.1309 6 1 4.1502 1.8879 0.6431 7 6 4.1376 0.8805 -1.2388 8 7 3.3961 0.3402 -2.1810 9 14 5.9985 0.8836 -1.4013 10 1 6.5978 1.5478 -0.2159 11 1 6.4902 -0.5150 -1.4870 12 1 6.3868 1.6211 -2.6303 13 7 1.6573 2.0972 1.2580 14 6 0.9551 3.3616 1.0011 15 1 0.7197 3.8456 1.9489 16 6 -0.3401 3.0797 0.2370 17 6 1.8493 4.2813 0.1672 18 7 3.1228 4.4933 0.8680 19 6 2.9392 5.3527 2.0446 20 6 4.2508 5.4329 2.8289 21 6 5.3471 6.0020 1.9241 22 6 5.4847 5.1158 0.6830 23 6 4.1374 5.0447 -0.0391 24 1 -0.3633 -1.0230 0.0976 25 1 -0.3634 0.4270 -0.9347 26 1 -0.3633 0.5960 0.8372 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8156 -0.0569 -2.9603 30 1 2.4620 2.2441 1.8487 31 1 -0.1047 2.5961 -0.7111 32 1 -0.9770 2.4242 0.8309 33 1 -0.8614 4.0178 0.0467 34 1 2.0404 3.8208 -0.8023 35 1 1.3504 5.2395 0.0222 36 1 2.6470 6.3521 1.7223 37 1 2.1600 4.9344 2.6818 38 1 4.5365 4.4356 3.1634 39 1 4.1191 6.0830 3.6939 40 1 6.2930 6.0205 2.4652 41 1 5.0800 7.0143 1.6208 42 1 5.7898 4.1134 0.9837 43 1 6.2340 5.5395 0.0145 44 1 4.2284 4.4029 -0.9154 45 1 3.8396 6.0456 -0.3517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049501327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:08 Heat of formation + Delta-G solvation = -11.659171 kcal Electronic energy + Delta-G solvation = -21115.838790 eV Core-core repulsion = 18360.407428 eV Total energy + Delta-G solvation = -2755.431362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.88822 -36.72055 -33.65670 -32.10295 -30.88198 -30.45013 -29.04446 -25.77248 -25.70620 -22.96181 -22.58624 -22.39589 -20.26514 -19.35691 -18.22009 -16.69180 -15.65524 -14.95724 -14.60314 -14.32989 -14.17587 -13.87916 -13.54570 -13.22773 -13.02503 -12.72697 -12.40754 -12.00738 -11.88688 -11.55859 -11.26608 -11.14128 -11.02224 -10.96901 -10.84674 -10.66111 -10.52247 -10.45953 -10.30696 -10.01247 -9.93115 -9.72651 -9.42870 -9.23973 -8.66956 -8.21175 -7.71098 -6.98288 -5.84452 -3.88881 3.33436 3.42905 3.46663 4.37010 4.53018 5.09102 5.13470 5.17754 5.41225 5.50137 5.55892 5.61910 5.74440 5.81483 5.86502 5.91428 5.97969 6.06005 6.10839 6.17295 6.18882 6.28130 6.40423 6.42315 6.46547 6.54774 6.56442 6.64271 6.71112 6.73777 6.86677 6.94332 7.25451 7.34258 7.65381 7.69187 7.70451 7.76791 7.99335 8.28573 8.40987 8.59571 8.96730 9.27560 9.74850 11.18730 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.010825 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.436253 B = 2585.945995 C = 3997.091554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.025 0.975 5 C -0.502 4.502 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.880 3.120 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.096 3.904 15 H 0.056 0.944 16 C -0.144 4.144 17 C 0.031 3.969 18 N -0.513 5.513 19 C 0.055 3.945 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.117 4.117 23 C 0.066 3.934 24 H 0.020 0.980 25 H 0.033 0.967 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.086 0.914 29 H 0.255 0.745 30 H 0.339 0.661 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.012 0.988 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 9.625 5.912 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.042 0.958 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.709 3.291 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.307 5.307 14 C -0.016 4.016 15 H 0.074 0.926 16 C -0.202 4.202 17 C -0.099 4.099 18 N -0.237 5.237 19 C -0.074 4.074 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.062 4.062 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.597 8.709 5.977 10.683 hybrid contribution 1.580 1.349 -0.911 2.268 sum -0.017 10.058 5.066 11.262 Atomic orbital electron populations 1.21875 0.99680 0.98350 0.99955 1.21531 0.91595 1.00087 1.01293 1.19095 0.93481 0.90565 0.86050 0.95754 1.21826 0.92183 1.35362 1.04732 0.91768 1.24901 0.97090 0.95904 0.96246 1.69899 1.34165 1.39806 1.09655 0.86731 0.87248 0.77429 0.77716 1.19746 1.21521 1.21583 1.60984 1.30998 1.19570 1.19164 1.21368 0.93146 0.91016 0.96076 0.92595 1.21980 0.96871 0.99999 1.01357 1.22886 0.89663 0.97554 0.99760 1.61670 1.07991 1.46573 1.07443 1.22104 0.97442 0.94314 0.93509 1.21554 0.94911 1.01585 0.97206 1.21553 0.98528 0.98545 0.96905 1.21577 0.96700 1.00850 0.96385 1.21963 0.91603 0.96704 0.95969 0.96051 0.94827 0.92958 0.95225 0.89602 0.93471 0.84239 0.91742 0.92194 0.94269 0.89502 0.96937 0.96222 0.90981 0.90903 0.92438 0.92469 0.92988 0.90624 0.92419 0.89998 0.96551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.69 37.16 0.32 -2.60 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.10 1.00 -68.87 -0.07 5.03 16 4 H 0.02 0.64 4.73 -51.93 -0.25 0.39 16 5 C -0.50 -12.90 8.40 -34.44 -0.29 -13.19 16 6 H 0.06 1.68 7.38 -52.49 -0.39 1.30 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 8 N -0.89 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.88 21.14 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.68 -13.84 5.67 -100.96 -0.57 -14.41 16 14 C 0.10 1.69 3.06 -67.72 -0.21 1.49 16 15 H 0.06 0.92 6.76 -51.93 -0.35 0.57 16 16 C -0.14 -2.43 7.84 37.16 0.29 -2.13 16 17 C 0.03 0.55 3.99 -3.83 -0.02 0.54 16 18 N -0.51 -8.78 3.89 -234.67 -0.91 -9.69 16 19 C 0.05 0.79 5.30 -3.83 -0.02 0.77 16 20 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 21 C -0.12 -1.53 6.00 -26.61 -0.16 -1.69 16 22 C -0.12 -1.80 6.09 -26.65 -0.16 -1.97 16 23 C 0.07 1.11 5.44 -3.84 -0.02 1.09 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 26 H 0.05 1.03 5.68 -51.93 -0.29 0.74 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.32 5.95 -51.93 -0.31 2.01 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.34 7.21 7.38 -39.29 -0.29 6.92 16 31 H 0.06 1.22 5.43 -51.93 -0.28 0.94 16 32 H 0.06 0.99 6.77 -51.93 -0.35 0.64 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.83 6.27 -51.92 -0.33 1.51 16 35 H 0.01 0.21 8.06 -51.93 -0.42 -0.21 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.60 7.96 -51.93 -0.41 1.19 16 45 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -26.21 328.71 -9.85 -36.05 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.19 Total: 7.03 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.73 Total: -15.57 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.86 Total: -48.59 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.21 -9.85 -36.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.394 kcal (2) G-P(sol) polarization free energy of solvation -26.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds