Wall clock time and date at job start Mon Mar 30 2020 06:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46836 * 2 1 4 4 H 1.09006 * 109.47051 * 305.28147 * 3 2 1 5 5 C 1.50702 * 109.46748 * 185.28655 * 3 2 1 6 6 H 1.08000 * 119.99322 * 239.99799 * 5 3 2 7 7 C 1.37878 * 120.00475 * 59.99951 * 5 3 2 8 8 N 1.31510 * 119.99543 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00102 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46920 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46883 * 119.99723 * 9 7 5 12 12 H 1.48497 * 109.47094 * 240.00147 * 9 7 5 13 13 N 1.46891 * 109.47343 * 65.28436 * 3 2 1 14 14 C 1.46895 * 111.00234 * 232.74960 * 13 3 2 15 15 H 1.08995 * 109.47434 * 182.32771 * 14 13 3 16 16 C 1.53000 * 109.47199 * 62.32711 * 14 13 3 17 17 C 1.52996 * 109.47259 * 302.32808 * 14 13 3 18 18 N 1.46896 * 109.47203 * 303.04764 * 17 14 13 19 19 C 1.46854 * 110.99768 * 288.37553 * 18 17 14 20 20 C 1.53033 * 109.52207 * 174.16168 * 19 18 17 21 21 C 1.53117 * 109.28400 * 59.17857 * 20 19 18 22 22 C 1.53121 * 109.15942 * 302.34804 * 21 20 19 23 23 C 1.46847 * 111.00519 * 164.16486 * 18 17 14 24 24 H 1.08999 * 109.46820 * 185.44786 * 1 2 3 25 25 H 1.08998 * 109.47262 * 65.44748 * 1 2 3 26 26 H 1.09000 * 109.46690 * 305.44386 * 1 2 3 27 27 H 1.08993 * 109.47424 * 120.00263 * 2 1 3 28 28 H 1.09000 * 109.46628 * 240.00190 * 2 1 3 29 29 H 0.97001 * 119.99640 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00439 * 108.79447 * 13 3 2 31 31 H 1.09000 * 109.47360 * 299.97539 * 16 14 13 32 32 H 1.09000 * 109.47263 * 59.97884 * 16 14 13 33 33 H 1.09003 * 109.47618 * 179.97438 * 16 14 13 34 34 H 1.09010 * 109.46965 * 63.04256 * 17 14 13 35 35 H 1.09003 * 109.47648 * 183.04192 * 17 14 13 36 36 H 1.09001 * 109.45985 * 294.17571 * 19 18 17 37 37 H 1.08994 * 109.46234 * 54.14654 * 19 18 17 38 38 H 1.08998 * 109.50693 * 299.23672 * 20 19 18 39 39 H 1.09001 * 109.53697 * 179.13659 * 20 19 18 40 40 H 1.08998 * 109.52759 * 182.44437 * 21 20 19 41 41 H 1.08998 * 109.52306 * 62.24427 * 21 20 19 42 42 H 1.09003 * 109.50090 * 297.70693 * 22 21 20 43 43 H 1.08993 * 109.50720 * 177.59327 * 22 21 20 44 44 H 1.08996 * 109.46316 * 305.85922 * 23 18 17 45 45 H 1.09004 * 109.46013 * 65.81878 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 -0.8390 5 6 3.5413 1.4445 -0.1309 6 1 4.1502 1.8879 0.6431 7 6 4.1376 0.8805 -1.2388 8 7 3.3961 0.3402 -2.1810 9 14 5.9985 0.8836 -1.4013 10 1 6.5978 1.5478 -0.2159 11 1 6.4902 -0.5150 -1.4870 12 1 6.3868 1.6211 -2.6303 13 7 1.6573 2.0972 1.2580 14 6 0.9551 3.3616 1.0011 15 1 0.7197 3.8456 1.9489 16 6 -0.3401 3.0797 0.2370 17 6 1.8493 4.2813 0.1672 18 7 3.1228 4.4933 0.8680 19 6 2.9392 5.3527 2.0446 20 6 4.2508 5.4329 2.8289 21 6 5.3471 6.0020 1.9241 22 6 5.4847 5.1158 0.6830 23 6 4.1374 5.0447 -0.0391 24 1 -0.3633 -1.0230 0.0976 25 1 -0.3634 0.4270 -0.9347 26 1 -0.3633 0.5960 0.8372 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8156 -0.0569 -2.9603 30 1 2.4620 2.2441 1.8487 31 1 -0.1047 2.5961 -0.7111 32 1 -0.9770 2.4242 0.8309 33 1 -0.8614 4.0178 0.0467 34 1 2.0404 3.8208 -0.8023 35 1 1.3504 5.2395 0.0222 36 1 2.6470 6.3521 1.7223 37 1 2.1600 4.9344 2.6818 38 1 4.5365 4.4356 3.1634 39 1 4.1191 6.0830 3.6939 40 1 6.2930 6.0205 2.4652 41 1 5.0800 7.0143 1.6208 42 1 5.7898 4.1134 0.9837 43 1 6.2340 5.5395 0.0145 44 1 4.2284 4.4029 -0.9154 45 1 3.8396 6.0456 -0.3517 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049501327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:08 Heat of formation + Delta-G solvation = -26.959314 kcal Electronic energy + Delta-G solvation = -21116.502254 eV Core-core repulsion = 18360.407428 eV Total energy + Delta-G solvation = -2756.094826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23851 -38.27231 -35.33882 -33.74168 -32.57802 -31.66542 -30.69891 -27.66283 -27.04479 -24.64511 -24.02819 -23.67798 -21.96337 -20.54285 -19.87132 -18.65893 -16.96158 -16.58731 -16.50278 -15.70955 -15.50591 -15.32272 -15.16049 -14.52620 -14.48505 -14.23088 -13.87339 -13.54468 -13.31993 -13.14806 -13.01210 -12.89014 -12.67425 -12.51060 -12.34826 -12.31354 -12.05346 -11.96458 -11.63174 -11.50409 -11.37717 -11.26489 -11.11945 -10.97871 -10.60048 -10.27435 -9.07323 -8.69018 -7.91293 -6.01370 1.37565 1.42447 1.51645 2.50230 3.07212 3.33070 3.92704 3.95402 3.98443 4.11451 4.19166 4.37388 4.46911 4.53589 4.59645 4.62442 4.71366 4.72936 4.78973 4.86134 4.91398 4.92426 4.97976 5.01757 5.08076 5.11819 5.14146 5.26681 5.33972 5.35959 5.38545 5.46974 5.53842 5.58340 5.76765 5.83443 5.94160 6.27428 6.32951 6.43916 6.45326 6.70734 7.10764 7.33135 7.65462 9.09036 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.010825 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.436253 B = 2585.945995 C = 3997.091554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.230 3.770 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.931 3.069 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.290 1.290 13 N -0.671 5.671 14 C 0.096 3.904 15 H 0.080 0.920 16 C -0.138 4.138 17 C 0.041 3.959 18 N -0.530 5.530 19 C 0.055 3.945 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.115 4.115 23 C 0.068 3.932 24 H 0.036 0.964 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.252 0.748 30 H 0.335 0.665 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.029 0.971 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 11.389 7.694 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.121 3.879 4 H 0.020 0.980 5 C -0.535 4.535 6 H 0.075 0.925 7 C -0.184 4.184 8 N -0.564 5.564 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.217 1.217 13 N -0.301 5.301 14 C -0.016 4.016 15 H 0.098 0.902 16 C -0.196 4.196 17 C -0.088 4.088 18 N -0.254 5.254 19 C -0.072 4.072 20 C -0.150 4.150 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.060 4.060 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.153 0.847 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.884 10.487 7.775 13.190 hybrid contribution 1.647 0.839 -1.448 2.348 sum -0.237 11.326 6.327 12.975 Atomic orbital electron populations 1.21712 0.96881 0.99587 1.00267 1.21419 0.94124 0.99754 0.99131 1.18798 0.92016 0.90409 0.86679 0.98023 1.22017 0.93465 1.33987 1.04009 0.92476 1.25485 1.00333 0.96197 0.96365 1.70027 1.35342 1.40981 1.10078 0.85909 0.83500 0.76982 0.77644 1.19076 1.21832 1.21685 1.60921 1.30526 1.21315 1.17319 1.21498 0.93040 0.89754 0.97278 0.90230 1.21915 0.96624 1.01255 0.99794 1.22667 0.90334 0.97919 0.97914 1.61642 1.07529 1.48070 1.08171 1.22173 0.98495 0.94228 0.92332 1.21553 0.94098 1.01388 0.97914 1.21523 0.99374 0.98411 0.95580 1.21554 0.95842 1.00095 0.97840 1.21867 0.92742 0.96318 0.95036 0.94510 0.95161 0.91714 0.96194 0.92824 0.93843 0.84709 0.94486 0.91614 0.91633 0.93615 0.95305 0.95156 0.90530 0.92505 0.89663 0.90929 0.91559 0.93404 0.91305 0.93806 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.69 71.98 0.63 -4.55 16 2 C -0.11 -5.15 5.45 30.60 0.17 -4.98 16 3 C 0.23 11.05 1.00 44.17 0.04 11.09 16 4 H 0.00 0.11 4.73 -2.38 -0.01 0.10 16 5 C -0.50 -26.11 8.40 25.60 0.22 -25.89 16 6 H 0.06 3.05 7.38 -2.91 -0.02 3.03 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -53.51 11.29 21.45 0.24 -53.27 16 9 Si 0.93 44.50 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 N -0.67 -27.10 5.67 -473.34 -2.68 -29.78 16 14 C 0.10 3.23 3.06 44.91 0.14 3.37 16 15 H 0.08 2.38 6.76 -2.39 -0.02 2.36 16 16 C -0.14 -4.42 7.84 71.98 0.56 -3.86 16 17 C 0.04 1.45 3.99 86.30 0.34 1.80 16 18 N -0.53 -17.71 3.89 -896.37 -3.49 -21.20 16 19 C 0.06 1.46 5.30 86.32 0.46 1.92 16 20 C -0.11 -2.62 6.09 30.64 0.19 -2.44 16 21 C -0.11 -2.58 6.00 30.67 0.18 -2.39 16 22 C -0.12 -3.44 6.09 30.65 0.19 -3.25 16 23 C 0.07 2.31 5.44 86.32 0.47 2.78 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.03 1.22 7.57 -2.39 -0.02 1.21 16 26 H 0.06 2.45 5.68 -2.39 -0.01 2.44 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 2.99 5.95 -2.39 -0.01 2.97 16 29 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.34 14.07 7.38 -89.70 -0.66 13.41 16 31 H 0.04 1.39 5.43 -2.39 -0.01 1.38 16 32 H 0.06 2.02 6.77 -2.39 -0.02 2.00 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.99 6.27 -2.38 -0.01 1.98 16 35 H 0.03 0.91 8.06 -2.39 -0.02 0.89 16 36 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.95 6.54 -2.39 -0.02 1.93 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.78 7.96 -2.39 -0.02 1.76 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -57.53 328.71 0.41 -57.12 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.28 Total: 25.83 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.03 Total: -25.23 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -5.93 Total: -104.25 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -57.53 0.41 -57.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049501327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.163 kcal (2) G-P(sol) polarization free energy of solvation -57.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds